Atomistry » Fluorine » PDB 6onv-6p3p » 6p11
Atomistry »
  Fluorine »
    PDB 6onv-6p3p »
      6p11 »

Fluorine in PDB 6p11: Structure of Spastin Aaa Domain (T692A Mutant) in Complex with Jnj- 7706621 Inhibitor

Enzymatic activity of Structure of Spastin Aaa Domain (T692A Mutant) in Complex with Jnj- 7706621 Inhibitor

All present enzymatic activity of Structure of Spastin Aaa Domain (T692A Mutant) in Complex with Jnj- 7706621 Inhibitor:
5.6.1.1;

Protein crystallography data

The structure of Structure of Spastin Aaa Domain (T692A Mutant) in Complex with Jnj- 7706621 Inhibitor, PDB code: 6p11 was solved by R.Pisa, T.Cupido, T.M.Kapoor, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 39.69 / 2.15
Space group P 65
Cell size a, b, c (Å), α, β, γ (°) 79.446, 79.446, 97.171, 90.00, 90.00, 120.00
R / Rfree (%) 21.3 / 24.1

Fluorine Binding Sites:

The binding sites of Fluorine atom in the Structure of Spastin Aaa Domain (T692A Mutant) in Complex with Jnj- 7706621 Inhibitor (pdb code 6p11). This binding sites where shown within 5.0 Angstroms radius around Fluorine atom.
In total 4 binding sites of Fluorine where determined in the Structure of Spastin Aaa Domain (T692A Mutant) in Complex with Jnj- 7706621 Inhibitor, PDB code: 6p11:
Jump to Fluorine binding site number: 1; 2; 3; 4;

Fluorine binding site 1 out of 4 in 6p11

Go back to Fluorine Binding Sites List in 6p11
Fluorine binding site 1 out of 4 in the Structure of Spastin Aaa Domain (T692A Mutant) in Complex with Jnj- 7706621 Inhibitor


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 1 of Structure of Spastin Aaa Domain (T692A Mutant) in Complex with Jnj- 7706621 Inhibitor within 5.0Å range:
probe atom residue distance (Å) B Occ
B:F802

b:53.6
occ:0.65
F1 B:SKE802 0.0 53.6 0.7
F1 B:SKE802 0.2 52.8 0.3
C11 B:SKE802 1.2 50.6 0.3
C11 B:SKE802 1.3 50.7 0.7
C10 B:SKE802 2.2 47.5 0.3
C12 B:SKE802 2.3 48.4 0.7
C12 B:SKE802 2.3 48.4 0.3
C10 B:SKE802 2.4 47.4 0.7
C9 B:SKE802 2.7 48.5 0.3
C9 B:SKE802 2.9 49.1 0.7
N5 B:SKE802 3.0 45.5 0.7
N5 B:SKE802 3.0 46.0 0.3
N6 B:SKE802 3.1 48.5 0.3
N6 B:SKE802 3.2 48.6 0.7
C15 B:SKE802 3.5 48.5 0.3
O B:GLY688 3.5 42.5 1.0
C13 B:SKE802 3.5 50.0 0.3
C13 B:SKE802 3.5 50.1 0.7
O3 B:SKE802 3.6 48.6 0.3
C15 B:SKE802 3.6 48.8 0.7
CD2 B:LEU659 3.6 55.5 1.0
O3 B:SKE802 3.9 49.9 0.7
C B:GLY688 3.9 41.8 1.0
C14 B:SKE802 4.0 45.6 0.3
C4 B:SKE802 4.0 51.9 0.7
C14 B:SKE802 4.0 45.4 0.7
CA B:GLY688 4.1 41.0 1.0
C2 B:SKE802 4.2 45.3 0.7
C2 B:SKE802 4.2 48.7 0.3
C1 B:SKE802 4.3 46.3 0.3
CD1 B:LEU659 4.3 50.3 1.0
C1 B:SKE802 4.4 47.3 0.7
CG B:LEU659 4.5 48.2 1.0
F2 B:SKE802 4.5 45.5 0.3
C5 B:SKE802 4.6 57.5 0.7
C4 B:SKE802 4.7 54.8 0.3
F2 B:SKE802 4.7 46.4 0.7
N B:SER689 4.8 42.5 1.0
C3 B:SKE802 4.8 54.9 0.7
CB B:ALA692 4.9 38.4 1.0
N2 B:SKE802 4.9 45.8 0.3
N2 B:SKE802 4.9 46.4 0.7
CB B:LEU659 5.0 42.6 1.0
N3 B:SKE802 5.0 54.0 0.7

Fluorine binding site 2 out of 4 in 6p11

Go back to Fluorine Binding Sites List in 6p11
Fluorine binding site 2 out of 4 in the Structure of Spastin Aaa Domain (T692A Mutant) in Complex with Jnj- 7706621 Inhibitor


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 2 of Structure of Spastin Aaa Domain (T692A Mutant) in Complex with Jnj- 7706621 Inhibitor within 5.0Å range:
probe atom residue distance (Å) B Occ
B:F802

b:52.8
occ:0.35
F1 B:SKE802 0.0 52.8 0.3
F1 B:SKE802 0.2 53.6 0.7
C11 B:SKE802 1.3 50.6 0.3
C11 B:SKE802 1.4 50.7 0.7
C12 B:SKE802 2.2 48.4 0.7
C12 B:SKE802 2.3 48.4 0.3
C10 B:SKE802 2.4 47.5 0.3
C10 B:SKE802 2.5 47.4 0.7
C9 B:SKE802 2.9 48.5 0.3
C9 B:SKE802 3.1 49.1 0.7
N5 B:SKE802 3.2 46.0 0.3
N5 B:SKE802 3.2 45.5 0.7
N6 B:SKE802 3.3 48.5 0.3
N6 B:SKE802 3.4 48.6 0.7
O B:GLY688 3.4 42.5 1.0
C13 B:SKE802 3.5 50.0 0.3
C13 B:SKE802 3.5 50.1 0.7
C15 B:SKE802 3.6 48.5 0.3
CD2 B:LEU659 3.7 55.5 1.0
C15 B:SKE802 3.7 48.8 0.7
O3 B:SKE802 3.8 48.6 0.3
C B:GLY688 3.9 41.8 1.0
C4 B:SKE802 4.0 51.9 0.7
C14 B:SKE802 4.0 45.6 0.3
O3 B:SKE802 4.1 49.9 0.7
C14 B:SKE802 4.1 45.4 0.7
CA B:GLY688 4.1 41.0 1.0
C2 B:SKE802 4.3 48.7 0.3
C2 B:SKE802 4.3 45.3 0.7
CD1 B:LEU659 4.4 50.3 1.0
C1 B:SKE802 4.5 46.3 0.3
C5 B:SKE802 4.5 57.5 0.7
CG B:LEU659 4.6 48.2 1.0
C1 B:SKE802 4.6 47.3 0.7
C4 B:SKE802 4.7 54.8 0.3
CB B:ALA692 4.7 38.4 1.0
F2 B:SKE802 4.7 45.5 0.3
N B:SER689 4.8 42.5 1.0
C3 B:SKE802 4.8 54.9 0.7
F2 B:SKE802 4.9 46.4 0.7
CD2 B:LEU663 4.9 45.5 1.0
CD1 B:LEU663 4.9 39.0 1.0
CB B:LEU659 4.9 42.6 1.0

Fluorine binding site 3 out of 4 in 6p11

Go back to Fluorine Binding Sites List in 6p11
Fluorine binding site 3 out of 4 in the Structure of Spastin Aaa Domain (T692A Mutant) in Complex with Jnj- 7706621 Inhibitor


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 3 of Structure of Spastin Aaa Domain (T692A Mutant) in Complex with Jnj- 7706621 Inhibitor within 5.0Å range:
probe atom residue distance (Å) B Occ
B:F802

b:46.4
occ:0.65
F2 B:SKE802 0.0 46.4 0.7
F2 B:SKE802 0.3 45.5 0.3
C15 B:SKE802 1.3 48.8 0.7
C15 B:SKE802 1.4 48.5 0.3
C14 B:SKE802 2.3 45.6 0.3
C14 B:SKE802 2.3 45.4 0.7
C10 B:SKE802 2.4 47.4 0.7
C10 B:SKE802 2.5 47.5 0.3
N B:GLY528 2.7 37.7 1.0
C9 B:SKE802 2.9 49.1 0.7
O3 B:SKE802 3.0 49.9 0.7
C9 B:SKE802 3.1 48.5 0.3
C B:ASN527 3.2 36.9 1.0
O3 B:SO4801 3.2 48.2 1.0
C B:GLY526 3.3 42.1 1.0
CA B:GLY528 3.3 35.3 1.0
N B:ASN527 3.3 43.8 1.0
O3 B:SKE802 3.3 48.6 0.3
O B:GLY526 3.3 41.6 1.0
CA B:ASN527 3.4 39.3 1.0
C11 B:SKE802 3.6 50.7 0.7
O B:HOH942 3.6 43.5 1.0
C13 B:SKE802 3.6 50.1 0.7
C13 B:SKE802 3.6 50.0 0.3
C11 B:SKE802 3.7 50.6 0.3
CD1 B:LEU531 4.0 59.6 1.0
CA B:GLY526 4.1 38.6 1.0
N6 B:SKE802 4.1 48.6 0.7
C12 B:SKE802 4.1 48.4 0.7
O B:ASN527 4.1 40.1 1.0
C12 B:SKE802 4.2 48.4 0.3
N6 B:SKE802 4.2 48.5 0.3
O B:HOH1014 4.3 59.4 1.0
S B:SO4801 4.6 39.5 1.0
C B:GLY528 4.6 38.1 1.0
N B:SER689 4.6 42.5 1.0
CA B:GLY688 4.7 41.0 1.0
F1 B:SKE802 4.7 53.6 0.7
N5 B:SKE802 4.8 45.5 0.7
N5 B:SKE802 4.8 46.0 0.3
C B:GLY688 4.9 41.8 1.0
F1 B:SKE802 4.9 52.8 0.3
CB B:ASN527 5.0 52.3 1.0
O1 B:SO4801 5.0 40.4 1.0

Fluorine binding site 4 out of 4 in 6p11

Go back to Fluorine Binding Sites List in 6p11
Fluorine binding site 4 out of 4 in the Structure of Spastin Aaa Domain (T692A Mutant) in Complex with Jnj- 7706621 Inhibitor


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 4 of Structure of Spastin Aaa Domain (T692A Mutant) in Complex with Jnj- 7706621 Inhibitor within 5.0Å range:
probe atom residue distance (Å) B Occ
B:F802

b:45.5
occ:0.35
F2 B:SKE802 0.0 45.5 0.3
F2 B:SKE802 0.3 46.4 0.7
C15 B:SKE802 1.2 48.8 0.7
C15 B:SKE802 1.3 48.5 0.3
C10 B:SKE802 2.2 47.4 0.7
C14 B:SKE802 2.3 45.6 0.3
C14 B:SKE802 2.4 45.4 0.7
C10 B:SKE802 2.4 47.5 0.3
C9 B:SKE802 2.7 49.1 0.7
N B:GLY528 2.7 37.7 1.0
O3 B:SKE802 2.9 49.9 0.7
C9 B:SKE802 2.9 48.5 0.3
O3 B:SKE802 3.1 48.6 0.3
CA B:GLY528 3.2 35.3 1.0
C B:ASN527 3.2 36.9 1.0
O3 B:SO4801 3.4 48.2 1.0
C11 B:SKE802 3.4 50.7 0.7
N B:ASN527 3.5 43.8 1.0
O B:GLY526 3.5 41.6 1.0
C B:GLY526 3.5 42.1 1.0
CA B:ASN527 3.5 39.3 1.0
C11 B:SKE802 3.6 50.6 0.3
C13 B:SKE802 3.6 50.1 0.7
C13 B:SKE802 3.6 50.0 0.3
O B:HOH942 3.6 43.5 1.0
CD1 B:LEU531 3.8 59.6 1.0
N6 B:SKE802 3.8 48.6 0.7
N6 B:SKE802 4.0 48.5 0.3
C12 B:SKE802 4.0 48.4 0.7
C12 B:SKE802 4.1 48.4 0.3
O B:ASN527 4.1 40.1 1.0
CA B:GLY526 4.3 38.6 1.0
N5 B:SKE802 4.5 45.5 0.7
O B:HOH1014 4.5 59.4 1.0
F1 B:SKE802 4.5 53.6 0.7
N5 B:SKE802 4.6 46.0 0.3
C B:GLY528 4.6 38.1 1.0
CA B:GLY688 4.7 41.0 1.0
F1 B:SKE802 4.7 52.8 0.3
N B:SER689 4.7 42.5 1.0
S B:SO4801 4.8 39.5 1.0
C B:GLY688 4.9 41.8 1.0
C1 B:SKE802 4.9 47.3 0.7

Reference:

R.Pisa, T.Cupido, J.B.Steinman, N.H.Jones, T.M.Kapoor. Analyzing Resistance to Design Selective Chemical Inhibitors For Aaa Proteins. Cell Chem Biol V. 26 1263 2019.
ISSN: ESSN 2451-9456
PubMed: 31257183
DOI: 10.1016/J.CHEMBIOL.2019.06.001
Page generated: Fri Aug 2 00:01:44 2024

Last articles

Zn in 9JPJ
Zn in 9JP7
Zn in 9JPK
Zn in 9JPL
Zn in 9GN6
Zn in 9GN7
Zn in 9GKU
Zn in 9GKW
Zn in 9GKX
Zn in 9GL0
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy