Fluorine in PDB 6p1d: Crystal Structure of Egfr with Mutant-Selective Dihydrodibenzodiazepinone Allosteric Inhibitor

Enzymatic activity of Crystal Structure of Egfr with Mutant-Selective Dihydrodibenzodiazepinone Allosteric Inhibitor

All present enzymatic activity of Crystal Structure of Egfr with Mutant-Selective Dihydrodibenzodiazepinone Allosteric Inhibitor:
2.7.10.1;

Protein crystallography data

The structure of Crystal Structure of Egfr with Mutant-Selective Dihydrodibenzodiazepinone Allosteric Inhibitor, PDB code: 6p1d was solved by D.E.Heppner, M.J.Eck, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 65.17 / 2.40
Space group P 1 21 1
Cell size a, b, c (Å), α, β, γ (°) 71.946, 101.812, 86.510, 90.00, 101.04, 90.00
R / Rfree (%) 19.5 / 21.3

Other elements in 6p1d:

The structure of Crystal Structure of Egfr with Mutant-Selective Dihydrodibenzodiazepinone Allosteric Inhibitor also contains other interesting chemical elements:

Magnesium (Mg) 4 atoms

Fluorine Binding Sites:

The binding sites of Fluorine atom in the Crystal Structure of Egfr with Mutant-Selective Dihydrodibenzodiazepinone Allosteric Inhibitor (pdb code 6p1d). This binding sites where shown within 5.0 Angstroms radius around Fluorine atom.
In total 3 binding sites of Fluorine where determined in the Crystal Structure of Egfr with Mutant-Selective Dihydrodibenzodiazepinone Allosteric Inhibitor, PDB code: 6p1d:
Jump to Fluorine binding site number: 1; 2; 3;

Fluorine binding site 1 out of 3 in 6p1d

Go back to Fluorine Binding Sites List in 6p1d
Fluorine binding site 1 out of 3 in the Crystal Structure of Egfr with Mutant-Selective Dihydrodibenzodiazepinone Allosteric Inhibitor


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 1 of Crystal Structure of Egfr with Mutant-Selective Dihydrodibenzodiazepinone Allosteric Inhibitor within 5.0Å range:
probe atom residue distance (Å) B Occ
D:F1101

b:31.7
occ:1.00
F03 D:NQ11101 0.0 31.7 1.0
C02 D:NQ11101 1.4 29.4 1.0
C01 D:NQ11101 2.4 29.9 1.0
C04 D:NQ11101 2.4 31.7 1.0
C D:ARG776 3.2 25.7 1.0
CB D:CYS775 3.2 21.5 1.0
O D:ARG776 3.2 22.4 1.0
C D:CYS775 3.2 27.0 1.0
O D:CYS775 3.3 26.9 1.0
N D:LEU777 3.4 26.7 1.0
N D:ARG776 3.5 27.4 1.0
CE D:MET790 3.6 21.2 1.0
SD D:MET790 3.7 32.3 1.0
C05 D:NQ11101 3.7 29.2 1.0
C07 D:NQ11101 3.7 31.6 1.0
CA D:ARG776 3.8 29.6 1.0
CA D:CYS775 3.8 26.7 1.0
CA D:LEU777 3.9 25.8 1.0
CB D:MET790 4.0 21.3 1.0
C06 D:NQ11101 4.1 33.6 1.0
OG1 D:THR854 4.3 22.4 1.0
O D:HOH1209 4.3 27.3 1.0
CG D:MET790 4.5 24.4 1.0
CB D:LEU777 4.6 25.4 1.0
SG D:CYS775 4.7 21.2 1.0
N17 D:NQ11101 4.9 33.5 1.0
N D:CYS775 5.0 26.6 1.0

Fluorine binding site 2 out of 3 in 6p1d

Go back to Fluorine Binding Sites List in 6p1d
Fluorine binding site 2 out of 3 in the Crystal Structure of Egfr with Mutant-Selective Dihydrodibenzodiazepinone Allosteric Inhibitor


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 2 of Crystal Structure of Egfr with Mutant-Selective Dihydrodibenzodiazepinone Allosteric Inhibitor within 5.0Å range:
probe atom residue distance (Å) B Occ
B:F1102

b:35.1
occ:1.00
F03 B:NQ11102 0.0 35.1 1.0
C02 B:NQ11102 1.4 33.6 1.0
C01 B:NQ11102 2.4 34.6 1.0
C04 B:NQ11102 2.4 31.1 1.0
CB B:CYS775 3.1 25.4 1.0
C B:CYS775 3.2 23.5 1.0
O B:CYS775 3.2 23.6 1.0
C B:ARG776 3.2 25.1 1.0
O B:ARG776 3.2 24.1 1.0
N B:ARG776 3.4 26.7 1.0
N B:LEU777 3.5 27.8 1.0
CE B:MET790 3.5 28.7 1.0
C07 B:NQ11102 3.7 34.2 1.0
C05 B:NQ11102 3.7 30.4 1.0
SD B:MET790 3.7 33.1 1.0
CA B:CYS775 3.7 22.1 1.0
CA B:ARG776 3.8 29.6 1.0
CA B:LEU777 4.0 26.3 1.0
C06 B:NQ11102 4.2 36.5 1.0
CB B:MET790 4.2 26.9 1.0
OG1 B:THR854 4.2 23.4 1.0
O B:HOH1224 4.5 24.0 1.0
CG B:MET790 4.6 26.3 1.0
SG B:CYS775 4.7 24.0 1.0
CB B:LEU777 4.7 26.1 1.0
N B:CYS775 4.8 23.2 1.0
N17 B:NQ11102 4.9 32.3 1.0

Fluorine binding site 3 out of 3 in 6p1d

Go back to Fluorine Binding Sites List in 6p1d
Fluorine binding site 3 out of 3 in the Crystal Structure of Egfr with Mutant-Selective Dihydrodibenzodiazepinone Allosteric Inhibitor


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 3 of Crystal Structure of Egfr with Mutant-Selective Dihydrodibenzodiazepinone Allosteric Inhibitor within 5.0Å range:
probe atom residue distance (Å) B Occ
C:F1101

b:26.0
occ:1.00
F03 C:NQ11101 0.0 26.0 1.0
C02 C:NQ11101 1.4 26.5 1.0
C01 C:NQ11101 2.4 25.0 1.0
C04 C:NQ11101 2.4 23.5 1.0
O C:ARG776 3.2 22.6 1.0
C C:ARG776 3.2 21.9 1.0
CB C:CYS775 3.2 22.9 1.0
C C:CYS775 3.4 24.1 1.0
CE C:MET790 3.4 24.3 1.0
N C:ARG776 3.5 22.5 1.0
O C:CYS775 3.6 20.3 1.0
N C:LEU777 3.6 21.4 1.0
SD C:MET790 3.7 26.8 1.0
C05 C:NQ11101 3.7 23.8 1.0
C07 C:NQ11101 3.7 26.8 1.0
CA C:ARG776 3.7 27.7 1.0
CA C:CYS775 3.9 26.7 1.0
OG1 C:THR854 4.1 26.6 1.0
CA C:LEU777 4.1 24.6 1.0
C06 C:NQ11101 4.1 32.4 1.0
CB C:MET790 4.2 19.3 1.0
CG C:MET790 4.6 25.4 1.0
CB C:LEU777 4.8 23.5 1.0
SG C:CYS775 4.8 23.7 1.0
O C:HOH1233 4.8 23.4 1.0
N17 C:NQ11101 4.9 30.3 1.0

Reference:

D.J.H.De Clercq, D.E.Heppner, C.To, J.Jang, E.Park, C.H.Yun, M.Mushajiang, B.H.Shin, T.W.Gero, D.A.Scott, P.A.Janne, M.J.Eck, N.S.Gray. Discovery and Optimization of Dibenzodiazepinones As Allosteric Mutant-Selective Egfr Inhibitors. Acs Med.Chem.Lett. V. 10 1549 2019.
ISSN: ISSN 1948-5875
PubMed: 31749909
DOI: 10.1021/ACSMEDCHEMLETT.9B00381
Page generated: Sun Dec 13 13:04:59 2020

Last articles

Zn in 8WB0
Zn in 8WAX
Zn in 8WAU
Zn in 8WAZ
Zn in 8WAY
Zn in 8WAV
Zn in 8WAW
Zn in 8WAT
Zn in 8W7M
Zn in 8WD3
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy