Fluorine in PDB 6pdy: MSP1-Substrate Complex in Open Conformation

The structure of MSP1-Substrate Complex in Open Conformation also contains other interesting chemical elements:

Magnesium

(Mg)

4 atoms

Pages:

>>> Page 1 <<< Page 2, Binding sites: 11 - 12;

Binding sites:

The binding sites of Fluorine atom in the MSP1-Substrate Complex in Open Conformation (pdb code 6pdy). This binding sites where shown within 5.0 Angstroms radius around Fluorine atom.
In total 12 binding sites of Fluorine where determined in the MSP1-Substrate Complex in Open Conformation, PDB code: 6pdy:
Jump to Fluorine binding site number: 1; 2; 3; 4; 5; 6; 7; 8; 9; 10;

Fluorine binding site 1 out of 12 in the MSP1-Substrate Complex in Open Conformation


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 1 of MSP1-Substrate Complex in Open Conformation within 5.0Å range: probe atom residue distance (Å) B Occ A:F502 b:0.7 occ:1.00 F1 A:BEF502 0.0 0.7 1.0 BE A:BEF502 1.5 0.7 1.0 MG A:MG503 2.1 0.1 1.0 NH1 B:ARG275 2.4 0.1 1.0 F3 A:BEF502 2.5 0.7 1.0 F2 A:BEF502 2.6 0.7 1.0 OE2 A:GLU214 3.1 30.0 1.0 O1B A:ADP501 3.5 0.4 1.0 CZ B:ARG275 3.6 0.1 1.0 NH1 B:ARG274 3.7 0.3 1.0 CG2 A:THR161 3.8 1.0 1.0 OD2 A:ASP213 4.1 0.3 1.0 OD1 A:ASP213 4.2 0.3 1.0 CD A:GLU214 4.3 30.0 1.0 NE B:ARG275 4.3 0.1 1.0 O3B A:ADP501 4.3 0.4 1.0 PB A:ADP501 4.4 0.4 1.0 CE A:LYS160 4.5 1.0 1.0 CG A:ASP213 4.5 0.3 1.0 NH2 B:ARG275 4.6 0.1 1.0 NZ A:LYS160 4.6 1.0 1.0 O B:MET238 4.7 0.1 1.0 OD1 B:ASP242 4.8 0.8 1.0 CB A:ASN263 4.8 0.2 1.0 CG A:GLU214 4.9 30.0 1.0

Fluorine binding site 2 out of 12 in the MSP1-Substrate Complex in Open Conformation


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 2 of MSP1-Substrate Complex in Open Conformation within 5.0Å range: probe atom residue distance (Å) B Occ A:F502 b:0.7 occ:1.00 F2 A:BEF502 0.0 0.7 1.0 BE A:BEF502 1.6 0.7 1.0 O3B A:ADP501 2.3 0.4 1.0 NH1 B:ARG274 2.3 0.3 1.0 F3 A:BEF502 2.5 0.7 1.0 F1 A:BEF502 2.6 0.7 1.0 NZ A:LYS160 3.0 1.0 1.0 O1B A:ADP501 3.1 0.4 1.0 PB A:ADP501 3.2 0.4 1.0 CA A:PRO156 3.4 0.9 1.0 CZ B:ARG274 3.4 0.3 1.0 CB A:PRO156 3.4 0.9 1.0 CE A:LYS160 3.7 1.0 1.0 NH1 B:ARG275 3.8 0.1 1.0 MG A:MG503 3.9 0.1 1.0 NE B:ARG274 4.0 0.3 1.0 O2B A:ADP501 4.2 0.4 1.0 NH2 B:ARG274 4.3 0.3 1.0 N A:PRO156 4.3 0.9 1.0 O3A A:ADP501 4.4 0.4 1.0 C A:PRO156 4.4 0.9 1.0 N A:GLY157 4.4 0.5 1.0 CZ B:ARG275 4.5 0.1 1.0 NE B:ARG275 4.6 0.1 1.0 CG A:PRO156 4.7 0.9 1.0 O A:PRO155 4.8 0.9 1.0 CB A:LYS160 4.8 1.0 1.0 C A:PRO155 4.9 0.9 1.0 CD A:LYS160 4.9 1.0 1.0 CG2 A:THR161 4.9 1.0 1.0 CD A:PRO156 4.9 0.9 1.0 CG A:LYS160 4.9 1.0 1.0

Fluorine binding site 3 out of 12 in the MSP1-Substrate Complex in Open Conformation


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 3 of MSP1-Substrate Complex in Open Conformation within 5.0Å range: probe atom residue distance (Å) B Occ A:F502 b:0.7 occ:1.00 F3 A:BEF502 0.0 0.7 1.0 BE A:BEF502 1.5 0.7 1.0 MG A:MG503 2.1 0.1 1.0 F2 A:BEF502 2.5 0.7 1.0 F1 A:BEF502 2.5 0.7 1.0 CG2 A:THR161 3.1 1.0 1.0 O1B A:ADP501 3.1 0.4 1.0 CE A:LYS160 3.1 1.0 1.0 CB A:LYS160 3.1 1.0 1.0 O3B A:ADP501 3.1 0.4 1.0 PB A:ADP501 3.2 0.4 1.0 O2B A:ADP501 3.3 0.4 1.0 N A:THR161 3.4 1.0 1.0 NZ A:LYS160 3.5 1.0 1.0 CG A:LYS160 3.9 1.0 1.0 CA A:LYS160 3.9 1.0 1.0 CD A:LYS160 4.0 1.0 1.0 C A:LYS160 4.0 1.0 1.0 CB A:THR161 4.1 1.0 1.0 N A:LYS160 4.1 1.0 1.0 CA A:THR161 4.3 1.0 1.0 NH1 B:ARG274 4.3 0.3 1.0 OG1 A:THR161 4.4 1.0 1.0 OD1 A:ASP213 4.4 0.3 1.0 OD2 A:ASP213 4.5 0.3 1.0 O A:ALA261 4.5 0.5 1.0 NH1 B:ARG275 4.7 0.1 1.0 O3A A:ADP501 4.8 0.4 1.0 CG A:ASP213 4.8 0.3 1.0 OE2 A:GLU214 4.9 30.0 1.0

Fluorine binding site 4 out of 12 in the MSP1-Substrate Complex in Open Conformation


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 4 of MSP1-Substrate Complex in Open Conformation within 5.0Å range: probe atom residue distance (Å) B Occ B:F502 b:54.8 occ:1.00 F1 B:BEF502 0.0 54.8 1.0 BE B:BEF502 1.5 54.8 1.0 OG1 B:THR161 2.2 54.6 1.0 F3 B:BEF502 2.5 54.8 1.0 MG B:MG503 2.6 55.1 1.0 F2 B:BEF502 2.6 54.8 1.0 CB B:THR161 3.5 54.6 1.0 OD2 B:ASP213 3.5 52.6 1.0 OE2 B:GLU214 3.5 30.0 1.0 OD1 B:ASP213 3.6 52.6 1.0 O2B B:ADP501 3.9 60.8 1.0 CG B:ASP213 4.0 52.6 1.0 CG2 B:THR161 4.0 54.6 1.0 NH1 C:ARG275 4.1 44.7 1.0 O C:ASP242 4.4 49.4 1.0 O2A B:ADP501 4.5 60.8 1.0 CD B:GLU214 4.6 30.0 1.0 CA B:THR161 4.6 54.6 1.0 N B:THR161 4.8 54.6 1.0 CG B:GLU214 4.9 30.0 1.0 NH1 C:ARG274 4.9 52.2 1.0 CA C:GLY243 4.9 45.8 1.0

Fluorine binding site 5 out of 12 in the MSP1-Substrate Complex in Open Conformation


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 5 of MSP1-Substrate Complex in Open Conformation within 5.0Å range: probe atom residue distance (Å) B Occ B:F502 b:54.8 occ:1.00 F2 B:BEF502 0.0 54.8 1.0 BE B:BEF502 1.6 54.8 1.0 F3 B:BEF502 2.5 54.8 1.0 F1 B:BEF502 2.6 54.8 1.0 O2B B:ADP501 2.8 60.8 1.0 OE2 B:GLU214 3.0 30.0 1.0 MG B:MG503 3.1 55.1 1.0 CD B:LYS160 3.7 54.8 1.0 OG1 B:THR161 3.7 54.6 1.0 CG B:LYS160 3.7 54.8 1.0 PB B:ADP501 4.0 60.8 1.0 NZ B:LYS160 4.2 54.8 1.0 OD1 B:ASN263 4.2 68.7 1.0 CD B:GLU214 4.3 30.0 1.0 ND2 B:ASN263 4.3 68.7 1.0 O1B B:ADP501 4.4 60.8 1.0 NH1 C:ARG275 4.5 44.7 1.0 CE B:LYS160 4.5 54.8 1.0 NH1 C:ARG274 4.5 52.2 1.0 CG B:ASN263 4.7 68.7 1.0 O3B B:ADP501 4.7 60.8 1.0 OD1 B:ASP213 4.8 52.6 1.0 OE1 B:GLU214 5.0 30.0 1.0 CB B:THR161 5.0 54.6 1.0

Fluorine binding site 6 out of 12 in the MSP1-Substrate Complex in Open Conformation


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 6 of MSP1-Substrate Complex in Open Conformation within 5.0Å range: probe atom residue distance (Å) B Occ B:F502 b:54.8 occ:1.00 F3 B:BEF502 0.0 54.8 1.0 BE B:BEF502 1.5 54.8 1.0 MG B:MG503 2.1 55.1 1.0 O2B B:ADP501 2.2 60.8 1.0 NH1 C:ARG274 2.4 52.2 1.0 F2 B:BEF502 2.5 54.8 1.0 F1 B:BEF502 2.5 54.8 1.0 O2A B:ADP501 3.1 60.8 1.0 NH1 C:ARG275 3.4 44.7 1.0 OG1 B:THR161 3.6 54.6 1.0 PB B:ADP501 3.6 60.8 1.0 CZ C:ARG274 3.7 52.2 1.0 NE C:ARG275 4.0 44.7 1.0 CZ C:ARG275 4.0 44.7 1.0 O3A B:ADP501 4.1 60.8 1.0 PA B:ADP501 4.2 60.8 1.0 O C:ASP242 4.3 49.4 1.0 NH2 C:ARG274 4.3 52.2 1.0 O1B B:ADP501 4.3 60.8 1.0 CB B:THR161 4.4 54.6 1.0 OE2 B:GLU214 4.6 30.0 1.0 OD2 C:ASP242 4.6 49.4 1.0 NE C:ARG274 4.6 52.2 1.0 O3B B:ADP501 4.7 60.8 1.0

Fluorine binding site 7 out of 12 in the MSP1-Substrate Complex in Open Conformation


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 7 of MSP1-Substrate Complex in Open Conformation within 5.0Å range: probe atom residue distance (Å) B Occ C:F502 b:48.1 occ:1.00 F1 C:BEF502 0.0 48.1 1.0 BE C:BEF502 1.5 48.1 1.0 MG C:MG503 2.1 50.5 1.0 OG1 C:THR161 2.3 46.1 1.0 F3 C:BEF502 2.5 48.1 1.0 F2 C:BEF502 2.6 48.1 1.0 OD2 C:ASP213 3.1 48.4 1.0 O2B C:ADP501 3.3 42.3 1.0 CB C:THR161 3.3 46.1 1.0 NH1 D:ARG275 3.7 46.7 1.0 O D:MET238 3.7 49.5 1.0 O2A C:ADP501 4.0 42.3 1.0 O3B C:ADP501 4.0 42.3 1.0 CG2 C:THR161 4.0 46.1 1.0 PB C:ADP501 4.2 42.3 1.0 CG C:ASP213 4.2 48.4 1.0 OD1 D:ASP242 4.3 51.9 1.0 O D:ASP242 4.4 51.9 1.0 OD1 C:ASP213 4.5 48.4 1.0 OD2 D:ASP242 4.5 51.9 1.0 O3A C:ADP501 4.6 42.3 1.0 CA C:THR161 4.6 46.1 1.0 CG D:ASP242 4.6 51.9 1.0 CZ D:ARG275 4.7 46.7 1.0 N C:THR161 4.7 46.1 1.0 C D:MET238 4.9 49.5 1.0 CA D:GLY243 4.9 49.5 1.0 PA C:ADP501 4.9 42.3 1.0

Fluorine binding site 8 out of 12 in the MSP1-Substrate Complex in Open Conformation


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 8 of MSP1-Substrate Complex in Open Conformation within 5.0Å range: probe atom residue distance (Å) B Occ C:F502 b:48.1 occ:1.00 F2 C:BEF502 0.0 48.1 1.0 BE C:BEF502 1.6 48.1 1.0 O3B C:ADP501 2.5 42.3 1.0 F3 C:BEF502 2.5 48.1 1.0 F1 C:BEF502 2.6 48.1 1.0 NH1 D:ARG275 3.0 46.7 1.0 NH2 D:ARG274 3.0 50.9 1.0 O3A C:ADP501 3.1 42.3 1.0 PB C:ADP501 3.2 42.3 1.0 CZ D:ARG275 3.3 46.7 1.0 O2B C:ADP501 3.4 42.3 1.0 OD2 D:ASP242 3.5 51.9 1.0 NH2 D:ARG275 3.5 46.7 1.0 O2A C:ADP501 3.8 42.3 1.0 CZ D:ARG274 3.8 50.9 1.0 NE D:ARG275 4.1 46.7 1.0 PA C:ADP501 4.1 42.3 1.0 CG D:ASP242 4.2 51.9 1.0 OG1 C:THR161 4.3 46.1 1.0 NH1 D:ARG274 4.3 50.9 1.0 CA C:GLY157 4.4 47.7 1.0 OD1 D:ASP242 4.5 51.9 1.0 N C:GLY157 4.5 47.7 1.0 MG C:MG503 4.5 50.5 1.0 NE D:ARG274 4.6 50.9 1.0 O1B C:ADP501 4.6 42.3 1.0 CD D:ARG274 4.8 50.9 1.0 O5' C:ADP501 4.8 42.3 1.0 CB C:THR161 4.9 46.1 1.0

Fluorine binding site 9 out of 12 in the MSP1-Substrate Complex in Open Conformation


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 9 of MSP1-Substrate Complex in Open Conformation within 5.0Å range: probe atom residue distance (Å) B Occ C:F502 b:48.1 occ:1.00 F3 C:BEF502 0.0 48.1 1.0 BE C:BEF502 1.5 48.1 1.0 O3B C:ADP501 2.3 42.3 1.0 F2 C:BEF502 2.5 48.1 1.0 F1 C:BEF502 2.5 48.1 1.0 O2B C:ADP501 3.0 42.3 1.0 PB C:ADP501 3.2 42.3 1.0 MG C:MG503 3.3 50.5 1.0 OG1 C:THR161 3.7 46.1 1.0 NH1 D:ARG275 3.7 46.7 1.0 CE C:LYS160 3.7 41.8 1.0 O3A C:ADP501 4.2 42.3 1.0 NZ C:LYS160 4.3 41.8 1.0 O1B C:ADP501 4.4 42.3 1.0 CZ D:ARG275 4.6 46.7 1.0 OD2 C:ASP213 4.7 48.4 1.0 NH2 D:ARG275 4.7 46.7 1.0 N C:GLY157 4.7 47.7 1.0 CB C:LYS160 4.8 41.8 1.0 CB C:THR161 4.8 46.1 1.0 CE D:MET238 4.9 49.5 1.0 CD C:LYS160 4.9 41.8 1.0 O2A C:ADP501 4.9 42.3 1.0 CB C:ALA261 5.0 44.5 1.0 N C:THR161 5.0 46.1 1.0

Fluorine binding site 10 out of 12 in the MSP1-Substrate Complex in Open Conformation


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 10 of MSP1-Substrate Complex in Open Conformation within 5.0Å range: probe atom residue distance (Å) B Occ E:F501 b:51.9 occ:1.00 F1 E:BEF501 0.0 51.9 1.0 BE E:BEF501 1.5 51.9 1.0 NH1 E:ARG275 2.3 56.5 1.0 F3 E:BEF501 2.5 51.9 1.0 F2 E:BEF501 2.6 51.9 1.0 O3B D:ADP501 3.2 46.9 1.0 CZ E:ARG275 3.3 56.5 1.0 NH2 E:ARG275 3.5 56.5 1.0 OE2 D:GLU214 3.6 30.0 1.0 O2B D:ADP501 3.8 46.9 1.0 PB D:ADP501 4.1 46.9 1.0 MG D:MG502 4.1 54.8 1.0 NZ D:LYS160 4.3 42.5 1.0 CB E:ALA271 4.4 60.8 1.0 NH2 E:ARG274 4.5 58.0 1.0 NE E:ARG275 4.5 56.5 1.0 CD D:GLU214 4.5 30.0 1.0 CG D:GLU214 4.7 30.0 1.0 ND2 D:ASN263 4.7 60.2 1.0 CB D:PRO156 4.7 46.1 1.0 CB D:ASN263 4.9 60.2 1.0

L.Wang, A.Myasnikov, X.Pan, P.Walter. Structure of the Aaa Protein MSP1 Reveals Mechanism of Mislocalized Membrane Protein Extraction. Elife V. 9 2020.
ISSN: ESSN 2050-084X
PubMed: 31999255
DOI: 10.7554/ELIFE.54031