Atomistry » Fluorine » PDB 6p3u-6pf8 » 6pek
Atomistry »
  Fluorine »
    PDB 6p3u-6pf8 »
      6pek »

Fluorine in PDB 6pek: Structure of Spastin Hexamer (Subunit A-E) in Complex with Substrate Peptide

Enzymatic activity of Structure of Spastin Hexamer (Subunit A-E) in Complex with Substrate Peptide

All present enzymatic activity of Structure of Spastin Hexamer (Subunit A-E) in Complex with Substrate Peptide:
5.6.1.1;

Other elements in 6pek:

The structure of Structure of Spastin Hexamer (Subunit A-E) in Complex with Substrate Peptide also contains other interesting chemical elements:

Magnesium (Mg) 4 atoms

Fluorine Binding Sites:

Pages:

>>> Page 1 <<< Page 2, Binding sites: 11 - 12;

Binding sites:

The binding sites of Fluorine atom in the Structure of Spastin Hexamer (Subunit A-E) in Complex with Substrate Peptide (pdb code 6pek). This binding sites where shown within 5.0 Angstroms radius around Fluorine atom.
In total 12 binding sites of Fluorine where determined in the Structure of Spastin Hexamer (Subunit A-E) in Complex with Substrate Peptide, PDB code: 6pek:
Jump to Fluorine binding site number: 1; 2; 3; 4; 5; 6; 7; 8; 9; 10;

Fluorine binding site 1 out of 12 in 6pek

Go back to Fluorine Binding Sites List in 6pek
Fluorine binding site 1 out of 12 in the Structure of Spastin Hexamer (Subunit A-E) in Complex with Substrate Peptide


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 1 of Structure of Spastin Hexamer (Subunit A-E) in Complex with Substrate Peptide within 5.0Å range:
probe atom residue distance (Å) B Occ
A:F702

b:84.4
occ:1.00
 F1 A:BEF702 0.0 84.4 1.0
BE A:BEF702 1.5 84.4 1.0
MG A:MG703 2.2 84.4 1.0
F3 A:BEF702 2.5 84.4 1.0
F2 A:BEF702 2.6 84.4 1.0
O3B A:ADP701 2.6 84.4 1.0
O2B A:ADP701 3.0 84.4 1.0
PB A:ADP701 3.1 84.4 1.0
O1B A:ADP701 3.3 84.4 1.0
NH2 B:ARG499 3.6 73.7 1.0
NH2 B:ARG498 3.8 76.5 1.0
OD1 A:ASN487 3.9 83.7 1.0
OD1 A:ASP441 3.9 86.2 1.0
OG1 A:THR389 4.3 84.7 1.0
OD2 A:ASP441 4.3 86.2 1.0
CG A:ASP441 4.5 86.2 1.0
CZ B:ARG499 4.5 73.7 1.0
O3A A:ADP701 4.6 84.4 1.0
N A:GLY385 4.6 80.9 1.0
ND2 A:ASN487 4.6 83.7 1.0
NH1 B:ARG499 4.6 73.7 1.0
CG A:ASN487 4.7 83.7 1.0
OE2 A:GLU442 4.8 88.3 1.0
CD A:GLU442 4.9 88.3 1.0
CD A:LYS388 5.0 81.1 1.0
CG A:GLU442 5.0 88.3 1.0

Fluorine binding site 2 out of 12 in 6pek

Go back to Fluorine Binding Sites List in 6pek
Fluorine binding site 2 out of 12 in the Structure of Spastin Hexamer (Subunit A-E) in Complex with Substrate Peptide


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 2 of Structure of Spastin Hexamer (Subunit A-E) in Complex with Substrate Peptide within 5.0Å range:
probe atom residue distance (Å) B Occ
A:F702

b:84.4
occ:1.00
 F2 A:BEF702 0.0 84.4 1.0
BE A:BEF702 1.5 84.4 1.0
O3B A:ADP701 2.5 84.4 1.0
ND2 A:ASN487 2.6 83.7 1.0
F1 A:BEF702 2.6 84.4 1.0
F3 A:BEF702 2.6 84.4 1.0
OD1 A:ASN487 3.1 83.7 1.0
CE A:LYS388 3.2 81.1 1.0
CG A:ASN487 3.2 83.7 1.0
CD A:LYS388 3.3 81.1 1.0
CA A:PRO384 3.4 80.4 1.0
N A:GLY385 3.5 80.9 1.0
PB A:ADP701 3.8 84.4 1.0
C A:PRO384 4.0 80.4 1.0
CG A:LYS388 4.0 81.1 1.0
O A:PRO383 4.0 84.5 1.0
O2B A:ADP701 4.0 84.4 1.0
CB A:PRO384 4.2 80.4 1.0
N A:PRO384 4.4 80.4 1.0
MG A:MG703 4.4 84.4 1.0
NZ A:LYS388 4.5 81.1 1.0
CB A:LYS388 4.5 81.1 1.0
C A:PRO383 4.6 84.5 1.0
NH2 B:ARG498 4.6 76.5 1.0
CA A:GLY385 4.6 80.9 1.0
CB A:ASN487 4.7 83.7 1.0
O1B A:ADP701 4.7 84.4 1.0
O3A A:ADP701 4.8 84.4 1.0
O A:THR486 4.8 84.3 1.0
O A:GLY382 4.9 84.0 1.0
OE2 A:GLU442 5.0 88.3 1.0

Fluorine binding site 3 out of 12 in 6pek

Go back to Fluorine Binding Sites List in 6pek
Fluorine binding site 3 out of 12 in the Structure of Spastin Hexamer (Subunit A-E) in Complex with Substrate Peptide


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 3 of Structure of Spastin Hexamer (Subunit A-E) in Complex with Substrate Peptide within 5.0Å range:
probe atom residue distance (Å) B Occ
A:F702

b:84.4
occ:1.00
 F3 A:BEF702 0.0 84.4 1.0
BE A:BEF702 1.5 84.4 1.0
O3B A:ADP701 2.4 84.4 1.0
F1 A:BEF702 2.5 84.4 1.0
NH2 B:ARG498 2.5 76.5 1.0
F2 A:BEF702 2.6 84.4 1.0
N A:GLY385 2.9 80.9 1.0
CB A:PRO384 3.1 80.4 1.0
CA A:PRO384 3.2 80.4 1.0
NH1 B:ARG499 3.3 73.7 1.0
C A:PRO384 3.4 80.4 1.0
CZ B:ARG498 3.5 76.5 1.0
OD1 A:ASN487 3.6 83.7 1.0
NE B:ARG498 3.7 76.5 1.0
PB A:ADP701 3.7 84.4 1.0
O1B A:ADP701 3.7 84.4 1.0
NH2 B:ARG499 3.8 73.7 1.0
CA A:GLY385 3.9 80.9 1.0
CZ B:ARG499 3.9 73.7 1.0
ND2 A:ASN487 4.0 83.7 1.0
CG A:ASN487 4.2 83.7 1.0
MG A:MG703 4.3 84.4 1.0
CG A:PRO384 4.4 80.4 1.0
O A:PRO384 4.5 80.4 1.0
O2B A:ADP701 4.5 84.4 1.0
N A:PRO384 4.6 80.4 1.0
NH1 B:ARG498 4.7 76.5 1.0
O3A A:ADP701 4.8 84.4 1.0

Fluorine binding site 4 out of 12 in 6pek

Go back to Fluorine Binding Sites List in 6pek
Fluorine binding site 4 out of 12 in the Structure of Spastin Hexamer (Subunit A-E) in Complex with Substrate Peptide


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 4 of Structure of Spastin Hexamer (Subunit A-E) in Complex with Substrate Peptide within 5.0Å range:
probe atom residue distance (Å) B Occ
B:F702

b:63.5
occ:1.00
 F1 B:BEF702 0.0 63.5 1.0
BE B:BEF702 1.5 63.5 1.0
MG B:MG703 2.2 63.5 1.0
F3 B:BEF702 2.5 63.5 1.0
F2 B:BEF702 2.6 63.5 1.0
O3B B:ADP701 2.6 63.5 1.0
O2B B:ADP701 3.1 63.5 1.0
PB B:ADP701 3.1 63.5 1.0
O1B B:ADP701 3.3 63.5 1.0
NH2 C:ARG498 4.1 64.0 1.0
OD1 B:ASP441 4.1 69.0 1.0
OD1 B:ASN487 4.1 63.4 1.0
NH2 C:ARG499 4.2 61.6 1.0
OG1 B:THR389 4.2 64.2 1.0
OD2 B:ASP441 4.4 69.0 1.0
CE B:LYS388 4.4 63.5 1.0
OE2 B:GLU442 4.5 71.0 1.0
O3A B:ADP701 4.6 63.5 1.0
ND2 B:ASN487 4.7 63.4 1.0
CG B:ASP441 4.7 69.0 1.0
N B:GLY385 4.8 62.1 1.0
CG B:ASN487 4.8 63.4 1.0
NZ B:LYS388 4.9 63.5 1.0
CD B:GLU442 5.0 71.0 1.0

Fluorine binding site 5 out of 12 in 6pek

Go back to Fluorine Binding Sites List in 6pek
Fluorine binding site 5 out of 12 in the Structure of Spastin Hexamer (Subunit A-E) in Complex with Substrate Peptide


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 5 of Structure of Spastin Hexamer (Subunit A-E) in Complex with Substrate Peptide within 5.0Å range:
probe atom residue distance (Å) B Occ
B:F702

b:63.5
occ:1.00
 F2 B:BEF702 0.0 63.5 1.0
BE B:BEF702 1.5 63.5 1.0
O3B B:ADP701 2.5 63.5 1.0
F1 B:BEF702 2.6 63.5 1.0
F3 B:BEF702 2.6 63.5 1.0
ND2 B:ASN487 2.8 63.4 1.0
NZ B:LYS388 2.8 63.5 1.0
CE B:LYS388 3.0 63.5 1.0
N B:GLY385 3.1 62.1 1.0
CA B:PRO384 3.2 63.3 1.0
OD1 B:ASN487 3.4 63.4 1.0
CG B:ASN487 3.5 63.4 1.0
C B:PRO384 3.7 63.3 1.0
PB B:ADP701 3.9 63.5 1.0
CB B:PRO384 4.0 63.3 1.0
O B:PRO383 4.0 63.8 1.0
O2B B:ADP701 4.2 63.5 1.0
CA B:GLY385 4.2 62.1 1.0
N B:PRO384 4.3 63.3 1.0
MG B:MG703 4.4 63.5 1.0
CD B:LYS388 4.5 63.5 1.0
C B:PRO383 4.5 63.8 1.0
NH2 C:ARG498 4.6 64.0 1.0
O1B B:ADP701 4.7 63.5 1.0
O3A B:ADP701 4.8 63.5 1.0
O B:PRO384 4.9 63.3 1.0
CG B:LYS388 4.9 63.5 1.0
CB B:ASN487 4.9 63.4 1.0
CG B:PRO384 5.0 63.3 1.0
O B:THR486 5.0 66.0 1.0

Fluorine binding site 6 out of 12 in 6pek

Go back to Fluorine Binding Sites List in 6pek
Fluorine binding site 6 out of 12 in the Structure of Spastin Hexamer (Subunit A-E) in Complex with Substrate Peptide


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 6 of Structure of Spastin Hexamer (Subunit A-E) in Complex with Substrate Peptide within 5.0Å range:
probe atom residue distance (Å) B Occ
B:F702

b:63.5
occ:1.00
 F3 B:BEF702 0.0 63.5 1.0
BE B:BEF702 1.5 63.5 1.0
O3B B:ADP701 2.4 63.5 1.0
F1 B:BEF702 2.5 63.5 1.0
NH2 C:ARG498 2.5 64.0 1.0
F2 B:BEF702 2.6 63.5 1.0
NH1 C:ARG499 3.2 61.6 1.0
N B:GLY385 3.3 62.1 1.0
NH2 C:ARG499 3.5 61.6 1.0
CZ C:ARG498 3.6 64.0 1.0
O1B B:ADP701 3.6 63.5 1.0
PB B:ADP701 3.6 63.5 1.0
CB B:PRO384 3.7 63.3 1.0
CZ C:ARG499 3.7 61.6 1.0
CA B:PRO384 3.8 63.3 1.0
NE C:ARG498 3.8 64.0 1.0
OD1 B:ASN487 3.9 63.4 1.0
C B:PRO384 4.0 63.3 1.0
CA B:GLY385 4.1 62.1 1.0
MG B:MG703 4.3 63.5 1.0
ND2 B:ASN487 4.5 63.4 1.0
O2B B:ADP701 4.5 63.5 1.0
CG B:ASN487 4.6 63.4 1.0
O3A B:ADP701 4.7 63.5 1.0
NH1 C:ARG498 4.8 64.0 1.0
NE C:ARG499 4.9 61.6 1.0
OE2 B:GLU442 5.0 71.0 1.0
CG B:PRO384 5.0 63.3 1.0

Fluorine binding site 7 out of 12 in 6pek

Go back to Fluorine Binding Sites List in 6pek
Fluorine binding site 7 out of 12 in the Structure of Spastin Hexamer (Subunit A-E) in Complex with Substrate Peptide


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 7 of Structure of Spastin Hexamer (Subunit A-E) in Complex with Substrate Peptide within 5.0Å range:
probe atom residue distance (Å) B Occ
C:F702

b:57.4
occ:1.00
 F1 C:BEF702 0.0 57.4 1.0
BE C:BEF702 1.5 57.4 1.0
MG C:MG703 2.2 57.4 1.0
F3 C:BEF702 2.5 57.4 1.0
F2 C:BEF702 2.6 57.4 1.0
O3B C:ADP701 2.6 57.4 1.0
O2B C:ADP701 2.9 57.4 1.0
PB C:ADP701 3.1 57.4 1.0
O1B C:ADP701 3.6 57.4 1.0
CE C:LYS388 3.9 53.6 1.0
NH2 D:ARG498 4.0 60.5 1.0
OG1 C:THR389 4.2 54.6 1.0
OD1 C:ASP441 4.3 60.9 1.0
N C:GLY385 4.3 56.9 1.0
OD1 C:ASN487 4.3 60.0 1.0
NZ C:LYS388 4.4 53.6 1.0
NH2 D:ARG499 4.4 60.6 1.0
O3A C:ADP701 4.6 57.4 1.0
ND2 C:ASN487 4.6 60.0 1.0
CB C:LYS388 4.8 53.6 1.0
CA C:PRO384 4.8 57.0 1.0
OD2 C:ASP441 4.9 60.9 1.0
CG C:ASN487 4.9 60.0 1.0
CD C:LYS388 5.0 53.6 1.0

Fluorine binding site 8 out of 12 in 6pek

Go back to Fluorine Binding Sites List in 6pek
Fluorine binding site 8 out of 12 in the Structure of Spastin Hexamer (Subunit A-E) in Complex with Substrate Peptide


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 8 of Structure of Spastin Hexamer (Subunit A-E) in Complex with Substrate Peptide within 5.0Å range:
probe atom residue distance (Å) B Occ
C:F702

b:57.4
occ:1.00
 F2 C:BEF702 0.0 57.4 1.0
BE C:BEF702 1.5 57.4 1.0
N C:GLY385 2.4 56.9 1.0
O3B C:ADP701 2.5 57.4 1.0
F1 C:BEF702 2.6 57.4 1.0
F3 C:BEF702 2.6 57.4 1.0
CE C:LYS388 2.9 53.6 1.0
C C:PRO384 3.1 57.0 1.0
CA C:PRO384 3.1 57.0 1.0
O C:PRO383 3.3 54.6 1.0
CA C:GLY385 3.4 56.9 1.0
NZ C:LYS388 3.4 53.6 1.0
N C:ASN386 3.7 55.3 1.0
PB C:ADP701 3.7 57.4 1.0
O2B C:ADP701 3.8 57.4 1.0
OD1 C:ASN487 4.0 60.0 1.0
C C:GLY385 4.0 56.9 1.0
C C:PRO383 4.1 54.6 1.0
N C:PRO384 4.1 57.0 1.0
NH2 D:ARG498 4.1 60.5 1.0
O C:PRO384 4.2 57.0 1.0
CB C:PRO384 4.3 57.0 1.0
CD C:LYS388 4.3 53.6 1.0
MG C:MG703 4.4 57.4 1.0
O3A C:ADP701 4.5 57.4 1.0
CG C:LYS388 4.6 53.6 1.0
CB C:LYS388 4.7 53.6 1.0
OD1 C:ASN386 4.7 55.3 1.0
O1B C:ADP701 4.8 57.4 1.0
O C:GLY382 4.9 54.9 1.0
CA C:ASN386 4.9 55.3 1.0
CG C:ASN487 4.9 60.0 1.0
CB C:ASN386 5.0 55.3 1.0

Fluorine binding site 9 out of 12 in 6pek

Go back to Fluorine Binding Sites List in 6pek
Fluorine binding site 9 out of 12 in the Structure of Spastin Hexamer (Subunit A-E) in Complex with Substrate Peptide


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 9 of Structure of Spastin Hexamer (Subunit A-E) in Complex with Substrate Peptide within 5.0Å range:
probe atom residue distance (Å) B Occ
C:F702

b:57.4
occ:1.00
 F3 C:BEF702 0.0 57.4 1.0
BE C:BEF702 1.5 57.4 1.0
O3B C:ADP701 2.4 57.4 1.0
NH2 D:ARG498 2.5 60.5 1.0
F1 C:BEF702 2.5 57.4 1.0
F2 C:BEF702 2.6 57.4 1.0
N C:GLY385 2.7 56.9 1.0
CA C:PRO384 3.1 57.0 1.0
CB C:PRO384 3.2 57.0 1.0
C C:PRO384 3.3 57.0 1.0
NH1 D:ARG499 3.4 60.6 1.0
CZ D:ARG498 3.5 60.5 1.0
CA C:GLY385 3.7 56.9 1.0
NE D:ARG498 3.7 60.5 1.0
NH2 D:ARG499 3.8 60.6 1.0
PB C:ADP701 3.8 57.4 1.0
CZ D:ARG499 3.9 60.6 1.0
O1B C:ADP701 4.1 57.4 1.0
MG C:MG703 4.3 57.4 1.0
ND2 C:ASN487 4.4 60.0 1.0
N C:PRO384 4.5 57.0 1.0
O C:PRO384 4.5 57.0 1.0
CG C:PRO384 4.5 57.0 1.0
O2B C:ADP701 4.5 57.4 1.0
OD1 C:ASN487 4.6 60.0 1.0
NH1 D:ARG498 4.6 60.5 1.0
O3A C:ADP701 4.9 57.4 1.0
CG C:ASN487 4.9 60.0 1.0
O C:PRO383 4.9 54.6 1.0
C C:GLY385 5.0 56.9 1.0

Fluorine binding site 10 out of 12 in 6pek

Go back to Fluorine Binding Sites List in 6pek
Fluorine binding site 10 out of 12 in the Structure of Spastin Hexamer (Subunit A-E) in Complex with Substrate Peptide


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 10 of Structure of Spastin Hexamer (Subunit A-E) in Complex with Substrate Peptide within 5.0Å range:
probe atom residue distance (Å) B Occ
D:F702

b:78.4
occ:1.00
 F1 D:BEF702 0.0 78.4 1.0
BE D:BEF702 1.5 78.4 1.0
MG D:MG703 2.0 78.4 1.0
F3 D:BEF702 2.5 78.4 1.0
O3B D:ADP701 2.5 78.4 1.0
F2 D:BEF702 2.6 78.4 1.0
O1B D:ADP701 2.7 78.4 1.0
PB D:ADP701 2.9 78.4 1.0
O2B D:ADP701 3.0 78.4 1.0
OG1 D:THR389 3.9 80.3 1.0
CE D:LYS388 3.9 73.6 1.0
OE2 D:GLU442 4.2 73.1 1.0
NZ D:LYS388 4.4 73.6 1.0
O3A D:ADP701 4.4 78.4 1.0
ND2 D:ASN487 4.6 72.3 1.0
OD1 D:ASP441 4.7 75.2 1.0
OD2 D:ASP441 4.7 75.2 1.0
CB D:LYS388 4.7 73.6 1.0
N D:GLY385 4.8 81.3 1.0
NH1 E:ARG499 4.9 98.5 1.0

Reference:

H.Han, H.L.Schubert, J.Mccullough, N.Monroe, W.I.Sundquist, C.P.Hill. Structure of the Microtubule Severing Protein Spastin Bound to A Glutamte-Rich Peptide Implies A Hand-Over-Hand Mechanism of Substrate Translocation. To Be Published.
Page generated: Fri Aug 2 00:14:28 2024

Last articles

Zn in 9JPJ
Zn in 9JP7
Zn in 9JPK
Zn in 9JPL
Zn in 9GN6
Zn in 9GN7
Zn in 9GKU
Zn in 9GKW
Zn in 9GKX
Zn in 9GL0
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy