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Fluorine in PDB 6pek: Structure of Spastin Hexamer (Subunit A-E) in Complex with Substrate Peptide

Enzymatic activity of Structure of Spastin Hexamer (Subunit A-E) in Complex with Substrate Peptide

All present enzymatic activity of Structure of Spastin Hexamer (Subunit A-E) in Complex with Substrate Peptide:
5.6.1.1;

Other elements in 6pek:

The structure of Structure of Spastin Hexamer (Subunit A-E) in Complex with Substrate Peptide also contains other interesting chemical elements:

Magnesium (Mg) 4 atoms

Fluorine Binding Sites:

Pages:

>>> Page 1 <<< Page 2, Binding sites: 11 - 12;

Binding sites:

The binding sites of Fluorine atom in the Structure of Spastin Hexamer (Subunit A-E) in Complex with Substrate Peptide (pdb code 6pek). This binding sites where shown within 5.0 Angstroms radius around Fluorine atom.
In total 12 binding sites of Fluorine where determined in the Structure of Spastin Hexamer (Subunit A-E) in Complex with Substrate Peptide, PDB code: 6pek:
Jump to Fluorine binding site number: 1; 2; 3; 4; 5; 6; 7; 8; 9; 10;

Fluorine binding site 1 out of 12 in 6pek

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Fluorine binding site 1 out of 12 in the Structure of Spastin Hexamer (Subunit A-E) in Complex with Substrate Peptide


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 1 of Structure of Spastin Hexamer (Subunit A-E) in Complex with Substrate Peptide within 5.0Å range:
probe atom residue distance (Å) B Occ
A:F702

b:84.4
occ:1.00
 F1 A:BEF702 0.0 84.4 1.0
BE A:BEF702 1.5 84.4 1.0
MG A:MG703 2.2 84.4 1.0
F3 A:BEF702 2.5 84.4 1.0
F2 A:BEF702 2.6 84.4 1.0
O3B A:ADP701 2.6 84.4 1.0
O2B A:ADP701 3.0 84.4 1.0
PB A:ADP701 3.1 84.4 1.0
O1B A:ADP701 3.3 84.4 1.0
NH2 B:ARG499 3.6 73.7 1.0
NH2 B:ARG498 3.8 76.5 1.0
OD1 A:ASN487 3.9 83.7 1.0
OD1 A:ASP441 3.9 86.2 1.0
OG1 A:THR389 4.3 84.7 1.0
OD2 A:ASP441 4.3 86.2 1.0
CG A:ASP441 4.5 86.2 1.0
CZ B:ARG499 4.5 73.7 1.0
O3A A:ADP701 4.6 84.4 1.0
N A:GLY385 4.6 80.9 1.0
ND2 A:ASN487 4.6 83.7 1.0
NH1 B:ARG499 4.6 73.7 1.0
CG A:ASN487 4.7 83.7 1.0
OE2 A:GLU442 4.8 88.3 1.0
CD A:GLU442 4.9 88.3 1.0
CD A:LYS388 5.0 81.1 1.0
CG A:GLU442 5.0 88.3 1.0

Fluorine binding site 2 out of 12 in 6pek

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Fluorine binding site 2 out of 12 in the Structure of Spastin Hexamer (Subunit A-E) in Complex with Substrate Peptide


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 2 of Structure of Spastin Hexamer (Subunit A-E) in Complex with Substrate Peptide within 5.0Å range:
probe atom residue distance (Å) B Occ
A:F702

b:84.4
occ:1.00
 F2 A:BEF702 0.0 84.4 1.0
BE A:BEF702 1.5 84.4 1.0
O3B A:ADP701 2.5 84.4 1.0
ND2 A:ASN487 2.6 83.7 1.0
F1 A:BEF702 2.6 84.4 1.0
F3 A:BEF702 2.6 84.4 1.0
OD1 A:ASN487 3.1 83.7 1.0
CE A:LYS388 3.2 81.1 1.0
CG A:ASN487 3.2 83.7 1.0
CD A:LYS388 3.3 81.1 1.0
CA A:PRO384 3.4 80.4 1.0
N A:GLY385 3.5 80.9 1.0
PB A:ADP701 3.8 84.4 1.0
C A:PRO384 4.0 80.4 1.0
CG A:LYS388 4.0 81.1 1.0
O A:PRO383 4.0 84.5 1.0
O2B A:ADP701 4.0 84.4 1.0
CB A:PRO384 4.2 80.4 1.0
N A:PRO384 4.4 80.4 1.0
MG A:MG703 4.4 84.4 1.0
NZ A:LYS388 4.5 81.1 1.0
CB A:LYS388 4.5 81.1 1.0
C A:PRO383 4.6 84.5 1.0
NH2 B:ARG498 4.6 76.5 1.0
CA A:GLY385 4.6 80.9 1.0
CB A:ASN487 4.7 83.7 1.0
O1B A:ADP701 4.7 84.4 1.0
O3A A:ADP701 4.8 84.4 1.0
O A:THR486 4.8 84.3 1.0
O A:GLY382 4.9 84.0 1.0
OE2 A:GLU442 5.0 88.3 1.0

Fluorine binding site 3 out of 12 in 6pek

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Fluorine binding site 3 out of 12 in the Structure of Spastin Hexamer (Subunit A-E) in Complex with Substrate Peptide


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 3 of Structure of Spastin Hexamer (Subunit A-E) in Complex with Substrate Peptide within 5.0Å range:
probe atom residue distance (Å) B Occ
A:F702

b:84.4
occ:1.00
 F3 A:BEF702 0.0 84.4 1.0
BE A:BEF702 1.5 84.4 1.0
O3B A:ADP701 2.4 84.4 1.0
F1 A:BEF702 2.5 84.4 1.0
NH2 B:ARG498 2.5 76.5 1.0
F2 A:BEF702 2.6 84.4 1.0
N A:GLY385 2.9 80.9 1.0
CB A:PRO384 3.1 80.4 1.0
CA A:PRO384 3.2 80.4 1.0
NH1 B:ARG499 3.3 73.7 1.0
C A:PRO384 3.4 80.4 1.0
CZ B:ARG498 3.5 76.5 1.0
OD1 A:ASN487 3.6 83.7 1.0
NE B:ARG498 3.7 76.5 1.0
PB A:ADP701 3.7 84.4 1.0
O1B A:ADP701 3.7 84.4 1.0
NH2 B:ARG499 3.8 73.7 1.0
CA A:GLY385 3.9 80.9 1.0
CZ B:ARG499 3.9 73.7 1.0
ND2 A:ASN487 4.0 83.7 1.0
CG A:ASN487 4.2 83.7 1.0
MG A:MG703 4.3 84.4 1.0
CG A:PRO384 4.4 80.4 1.0
O A:PRO384 4.5 80.4 1.0
O2B A:ADP701 4.5 84.4 1.0
N A:PRO384 4.6 80.4 1.0
NH1 B:ARG498 4.7 76.5 1.0
O3A A:ADP701 4.8 84.4 1.0

Fluorine binding site 4 out of 12 in 6pek

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Fluorine binding site 4 out of 12 in the Structure of Spastin Hexamer (Subunit A-E) in Complex with Substrate Peptide


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 4 of Structure of Spastin Hexamer (Subunit A-E) in Complex with Substrate Peptide within 5.0Å range:
probe atom residue distance (Å) B Occ
B:F702

b:63.5
occ:1.00
 F1 B:BEF702 0.0 63.5 1.0
BE B:BEF702 1.5 63.5 1.0
MG B:MG703 2.2 63.5 1.0
F3 B:BEF702 2.5 63.5 1.0
F2 B:BEF702 2.6 63.5 1.0
O3B B:ADP701 2.6 63.5 1.0
O2B B:ADP701 3.1 63.5 1.0
PB B:ADP701 3.1 63.5 1.0
O1B B:ADP701 3.3 63.5 1.0
NH2 C:ARG498 4.1 64.0 1.0
OD1 B:ASP441 4.1 69.0 1.0
OD1 B:ASN487 4.1 63.4 1.0
NH2 C:ARG499 4.2 61.6 1.0
OG1 B:THR389 4.2 64.2 1.0
OD2 B:ASP441 4.4 69.0 1.0
CE B:LYS388 4.4 63.5 1.0
OE2 B:GLU442 4.5 71.0 1.0
O3A B:ADP701 4.6 63.5 1.0
ND2 B:ASN487 4.7 63.4 1.0
CG B:ASP441 4.7 69.0 1.0
N B:GLY385 4.8 62.1 1.0
CG B:ASN487 4.8 63.4 1.0
NZ B:LYS388 4.9 63.5 1.0
CD B:GLU442 5.0 71.0 1.0

Fluorine binding site 5 out of 12 in 6pek

Go back to Fluorine Binding Sites List in 6pek
Fluorine binding site 5 out of 12 in the Structure of Spastin Hexamer (Subunit A-E) in Complex with Substrate Peptide


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 5 of Structure of Spastin Hexamer (Subunit A-E) in Complex with Substrate Peptide within 5.0Å range:
probe atom residue distance (Å) B Occ
B:F702

b:63.5
occ:1.00
 F2 B:BEF702 0.0 63.5 1.0
BE B:BEF702 1.5 63.5 1.0
O3B B:ADP701 2.5 63.5 1.0
F1 B:BEF702 2.6 63.5 1.0
F3 B:BEF702 2.6 63.5 1.0
ND2 B:ASN487 2.8 63.4 1.0
NZ B:LYS388 2.8 63.5 1.0
CE B:LYS388 3.0 63.5 1.0
N B:GLY385 3.1 62.1 1.0
CA B:PRO384 3.2 63.3 1.0
OD1 B:ASN487 3.4 63.4 1.0
CG B:ASN487 3.5 63.4 1.0
C B:PRO384 3.7 63.3 1.0
PB B:ADP701 3.9 63.5 1.0
CB B:PRO384 4.0 63.3 1.0
O B:PRO383 4.0 63.8 1.0
O2B B:ADP701 4.2 63.5 1.0
CA B:GLY385 4.2 62.1 1.0
N B:PRO384 4.3 63.3 1.0
MG B:MG703 4.4 63.5 1.0
CD B:LYS388 4.5 63.5 1.0
C B:PRO383 4.5 63.8 1.0
NH2 C:ARG498 4.6 64.0 1.0
O1B B:ADP701 4.7 63.5 1.0
O3A B:ADP701 4.8 63.5 1.0
O B:PRO384 4.9 63.3 1.0
CG B:LYS388 4.9 63.5 1.0
CB B:ASN487 4.9 63.4 1.0
CG B:PRO384 5.0 63.3 1.0
O B:THR486 5.0 66.0 1.0

Fluorine binding site 6 out of 12 in 6pek

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Fluorine binding site 6 out of 12 in the Structure of Spastin Hexamer (Subunit A-E) in Complex with Substrate Peptide


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 6 of Structure of Spastin Hexamer (Subunit A-E) in Complex with Substrate Peptide within 5.0Å range:
probe atom residue distance (Å) B Occ
B:F702

b:63.5
occ:1.00
 F3 B:BEF702 0.0 63.5 1.0
BE B:BEF702 1.5 63.5 1.0
O3B B:ADP701 2.4 63.5 1.0
F1 B:BEF702 2.5 63.5 1.0
NH2 C:ARG498 2.5 64.0 1.0
F2 B:BEF702 2.6 63.5 1.0
NH1 C:ARG499 3.2 61.6 1.0
N B:GLY385 3.3 62.1 1.0
NH2 C:ARG499 3.5 61.6 1.0
CZ C:ARG498 3.6 64.0 1.0
O1B B:ADP701 3.6 63.5 1.0
PB B:ADP701 3.6 63.5 1.0
CB B:PRO384 3.7 63.3 1.0
CZ C:ARG499 3.7 61.6 1.0
CA B:PRO384 3.8 63.3 1.0
NE C:ARG498 3.8 64.0 1.0
OD1 B:ASN487 3.9 63.4 1.0
C B:PRO384 4.0 63.3 1.0
CA B:GLY385 4.1 62.1 1.0
MG B:MG703 4.3 63.5 1.0
ND2 B:ASN487 4.5 63.4 1.0
O2B B:ADP701 4.5 63.5 1.0
CG B:ASN487 4.6 63.4 1.0
O3A B:ADP701 4.7 63.5 1.0
NH1 C:ARG498 4.8 64.0 1.0
NE C:ARG499 4.9 61.6 1.0
OE2 B:GLU442 5.0 71.0 1.0
CG B:PRO384 5.0 63.3 1.0

Fluorine binding site 7 out of 12 in 6pek

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Fluorine binding site 7 out of 12 in the Structure of Spastin Hexamer (Subunit A-E) in Complex with Substrate Peptide


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 7 of Structure of Spastin Hexamer (Subunit A-E) in Complex with Substrate Peptide within 5.0Å range:
probe atom residue distance (Å) B Occ
C:F702

b:57.4
occ:1.00
 F1 C:BEF702 0.0 57.4 1.0
BE C:BEF702 1.5 57.4 1.0
MG C:MG703 2.2 57.4 1.0
F3 C:BEF702 2.5 57.4 1.0
F2 C:BEF702 2.6 57.4 1.0
O3B C:ADP701 2.6 57.4 1.0
O2B C:ADP701 2.9 57.4 1.0
PB C:ADP701 3.1 57.4 1.0
O1B C:ADP701 3.6 57.4 1.0
CE C:LYS388 3.9 53.6 1.0
NH2 D:ARG498 4.0 60.5 1.0
OG1 C:THR389 4.2 54.6 1.0
OD1 C:ASP441 4.3 60.9 1.0
N C:GLY385 4.3 56.9 1.0
OD1 C:ASN487 4.3 60.0 1.0
NZ C:LYS388 4.4 53.6 1.0
NH2 D:ARG499 4.4 60.6 1.0
O3A C:ADP701 4.6 57.4 1.0
ND2 C:ASN487 4.6 60.0 1.0
CB C:LYS388 4.8 53.6 1.0
CA C:PRO384 4.8 57.0 1.0
OD2 C:ASP441 4.9 60.9 1.0
CG C:ASN487 4.9 60.0 1.0
CD C:LYS388 5.0 53.6 1.0

Fluorine binding site 8 out of 12 in 6pek

Go back to Fluorine Binding Sites List in 6pek
Fluorine binding site 8 out of 12 in the Structure of Spastin Hexamer (Subunit A-E) in Complex with Substrate Peptide


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 8 of Structure of Spastin Hexamer (Subunit A-E) in Complex with Substrate Peptide within 5.0Å range:
probe atom residue distance (Å) B Occ
C:F702

b:57.4
occ:1.00
 F2 C:BEF702 0.0 57.4 1.0
BE C:BEF702 1.5 57.4 1.0
N C:GLY385 2.4 56.9 1.0
O3B C:ADP701 2.5 57.4 1.0
F1 C:BEF702 2.6 57.4 1.0
F3 C:BEF702 2.6 57.4 1.0
CE C:LYS388 2.9 53.6 1.0
C C:PRO384 3.1 57.0 1.0
CA C:PRO384 3.1 57.0 1.0
O C:PRO383 3.3 54.6 1.0
CA C:GLY385 3.4 56.9 1.0
NZ C:LYS388 3.4 53.6 1.0
N C:ASN386 3.7 55.3 1.0
PB C:ADP701 3.7 57.4 1.0
O2B C:ADP701 3.8 57.4 1.0
OD1 C:ASN487 4.0 60.0 1.0
C C:GLY385 4.0 56.9 1.0
C C:PRO383 4.1 54.6 1.0
N C:PRO384 4.1 57.0 1.0
NH2 D:ARG498 4.1 60.5 1.0
O C:PRO384 4.2 57.0 1.0
CB C:PRO384 4.3 57.0 1.0
CD C:LYS388 4.3 53.6 1.0
MG C:MG703 4.4 57.4 1.0
O3A C:ADP701 4.5 57.4 1.0
CG C:LYS388 4.6 53.6 1.0
CB C:LYS388 4.7 53.6 1.0
OD1 C:ASN386 4.7 55.3 1.0
O1B C:ADP701 4.8 57.4 1.0
O C:GLY382 4.9 54.9 1.0
CA C:ASN386 4.9 55.3 1.0
CG C:ASN487 4.9 60.0 1.0
CB C:ASN386 5.0 55.3 1.0

Fluorine binding site 9 out of 12 in 6pek

Go back to Fluorine Binding Sites List in 6pek
Fluorine binding site 9 out of 12 in the Structure of Spastin Hexamer (Subunit A-E) in Complex with Substrate Peptide


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 9 of Structure of Spastin Hexamer (Subunit A-E) in Complex with Substrate Peptide within 5.0Å range:
probe atom residue distance (Å) B Occ
C:F702

b:57.4
occ:1.00
 F3 C:BEF702 0.0 57.4 1.0
BE C:BEF702 1.5 57.4 1.0
O3B C:ADP701 2.4 57.4 1.0
NH2 D:ARG498 2.5 60.5 1.0
F1 C:BEF702 2.5 57.4 1.0
F2 C:BEF702 2.6 57.4 1.0
N C:GLY385 2.7 56.9 1.0
CA C:PRO384 3.1 57.0 1.0
CB C:PRO384 3.2 57.0 1.0
C C:PRO384 3.3 57.0 1.0
NH1 D:ARG499 3.4 60.6 1.0
CZ D:ARG498 3.5 60.5 1.0
CA C:GLY385 3.7 56.9 1.0
NE D:ARG498 3.7 60.5 1.0
NH2 D:ARG499 3.8 60.6 1.0
PB C:ADP701 3.8 57.4 1.0
CZ D:ARG499 3.9 60.6 1.0
O1B C:ADP701 4.1 57.4 1.0
MG C:MG703 4.3 57.4 1.0
ND2 C:ASN487 4.4 60.0 1.0
N C:PRO384 4.5 57.0 1.0
O C:PRO384 4.5 57.0 1.0
CG C:PRO384 4.5 57.0 1.0
O2B C:ADP701 4.5 57.4 1.0
OD1 C:ASN487 4.6 60.0 1.0
NH1 D:ARG498 4.6 60.5 1.0
O3A C:ADP701 4.9 57.4 1.0
CG C:ASN487 4.9 60.0 1.0
O C:PRO383 4.9 54.6 1.0
C C:GLY385 5.0 56.9 1.0

Fluorine binding site 10 out of 12 in 6pek

Go back to Fluorine Binding Sites List in 6pek
Fluorine binding site 10 out of 12 in the Structure of Spastin Hexamer (Subunit A-E) in Complex with Substrate Peptide


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 10 of Structure of Spastin Hexamer (Subunit A-E) in Complex with Substrate Peptide within 5.0Å range:
probe atom residue distance (Å) B Occ
D:F702

b:78.4
occ:1.00
 F1 D:BEF702 0.0 78.4 1.0
BE D:BEF702 1.5 78.4 1.0
MG D:MG703 2.0 78.4 1.0
F3 D:BEF702 2.5 78.4 1.0
O3B D:ADP701 2.5 78.4 1.0
F2 D:BEF702 2.6 78.4 1.0
O1B D:ADP701 2.7 78.4 1.0
PB D:ADP701 2.9 78.4 1.0
O2B D:ADP701 3.0 78.4 1.0
OG1 D:THR389 3.9 80.3 1.0
CE D:LYS388 3.9 73.6 1.0
OE2 D:GLU442 4.2 73.1 1.0
NZ D:LYS388 4.4 73.6 1.0
O3A D:ADP701 4.4 78.4 1.0
ND2 D:ASN487 4.6 72.3 1.0
OD1 D:ASP441 4.7 75.2 1.0
OD2 D:ASP441 4.7 75.2 1.0
CB D:LYS388 4.7 73.6 1.0
N D:GLY385 4.8 81.3 1.0
NH1 E:ARG499 4.9 98.5 1.0

Reference:

H.Han, H.L.Schubert, J.Mccullough, N.Monroe, W.I.Sundquist, C.P.Hill. Structure of the Microtubule Severing Protein Spastin Bound to A Glutamte-Rich Peptide Implies A Hand-Over-Hand Mechanism of Substrate Translocation. To Be Published.
Page generated: Fri Aug 2 00:14:28 2024

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