Fluorine in PDB 6pt2: Crystal Structure of the Active Delta Opioid Receptor in Complex with the Peptide Agonist KGCHM07
Protein crystallography data
The structure of Crystal Structure of the Active Delta Opioid Receptor in Complex with the Peptide Agonist KGCHM07, PDB code: 6pt2
was solved by
T.Claff,
J.Yu,
V.Blais,
N.Patel,
C.Martin,
L.Wu,
G.W.Han,
B.J.Holleran,
O.Vander Poorten,
M.A.Hanson,
P.Sarret,
L.Gendron,
V.Cherezov,
V.Katritch,
S.Ballet,
Z.Liu,
C.E.Muller,
R.C.Stevens,
with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:
Resolution Low / High (Å)
|
49.51 /
2.80
|
Space group
|
P 21 21 21
|
Cell size a, b, c (Å), α, β, γ (°)
|
48.960,
140.880,
158.640,
90.00,
90.00,
90.00
|
R / Rfree (%)
|
24.6 /
28.2
|
Fluorine Binding Sites:
Pages:
>>> Page 1 <<<
Page 2, Binding sites: 11 -
12;
Binding sites:
The binding sites of Fluorine atom in the Crystal Structure of the Active Delta Opioid Receptor in Complex with the Peptide Agonist KGCHM07
(pdb code 6pt2). This binding sites where shown within
5.0 Angstroms radius around Fluorine atom.
In total 12 binding sites of Fluorine where determined in the
Crystal Structure of the Active Delta Opioid Receptor in Complex with the Peptide Agonist KGCHM07, PDB code: 6pt2:
Jump to Fluorine binding site number:
1;
2;
3;
4;
5;
6;
7;
8;
9;
10;
Fluorine binding site 1 out
of 12 in 6pt2
Go back to
Fluorine Binding Sites List in 6pt2
Fluorine binding site 1 out
of 12 in the Crystal Structure of the Active Delta Opioid Receptor in Complex with the Peptide Agonist KGCHM07
Mono view
Stereo pair view
|
A full contact list of Fluorine with other atoms in the F binding
site number 1 of Crystal Structure of the Active Delta Opioid Receptor in Complex with the Peptide Agonist KGCHM07 within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
C:F5
b:89.8
occ:1.00
|
FCA
|
C:OXJ5
|
0.0
|
89.8
|
1.0
|
CBY
|
C:OXJ5
|
1.4
|
88.2
|
1.0
|
FCB
|
C:OXJ5
|
2.2
|
87.4
|
1.0
|
FCC
|
C:OXJ5
|
2.2
|
88.6
|
1.0
|
CBW
|
C:OXJ5
|
2.3
|
86.1
|
1.0
|
CBX
|
C:OXJ5
|
2.9
|
83.6
|
1.0
|
CG2
|
A:VAL281
|
3.3
|
91.9
|
1.0
|
CE3
|
A:TRP284
|
3.4
|
95.7
|
1.0
|
CD
|
C:DAR2
|
3.5
|
96.5
|
1.0
|
CBV
|
C:OXJ5
|
3.5
|
87.0
|
1.0
|
NH1
|
C:DAR2
|
3.8
|
97.9
|
1.0
|
CD2
|
A:TRP284
|
3.9
|
93.9
|
1.0
|
CB
|
C:DAR2
|
3.9
|
88.6
|
1.0
|
CA
|
A:VAL281
|
4.0
|
89.1
|
1.0
|
CZ3
|
A:TRP284
|
4.0
|
97.6
|
1.0
|
CB
|
A:VAL281
|
4.1
|
92.6
|
1.0
|
CBS
|
C:OXJ5
|
4.2
|
82.8
|
1.0
|
CB
|
A:TRP284
|
4.3
|
93.2
|
1.0
|
CG
|
A:TRP284
|
4.3
|
94.0
|
1.0
|
CG1
|
A:VAL281
|
4.3
|
92.0
|
1.0
|
CG
|
C:DAR2
|
4.3
|
91.1
|
1.0
|
O
|
C:DAR2
|
4.4
|
80.2
|
1.0
|
NE
|
C:DAR2
|
4.6
|
98.8
|
1.0
|
N
|
A:VAL281
|
4.6
|
89.1
|
1.0
|
CZ
|
C:DAR2
|
4.7
|
99.1
|
1.0
|
CBU
|
C:OXJ5
|
4.7
|
89.8
|
1.0
|
CE2
|
A:TRP284
|
4.9
|
97.3
|
1.0
|
CBT
|
C:OXJ5
|
4.9
|
85.6
|
1.0
|
CH2
|
A:TRP284
|
4.9
|
98.0
|
1.0
|
|
Fluorine binding site 2 out
of 12 in 6pt2
Go back to
Fluorine Binding Sites List in 6pt2
Fluorine binding site 2 out
of 12 in the Crystal Structure of the Active Delta Opioid Receptor in Complex with the Peptide Agonist KGCHM07
Mono view
Stereo pair view
|
A full contact list of Fluorine with other atoms in the F binding
site number 2 of Crystal Structure of the Active Delta Opioid Receptor in Complex with the Peptide Agonist KGCHM07 within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
C:F5
b:87.4
occ:1.00
|
FCB
|
C:OXJ5
|
0.0
|
87.4
|
1.0
|
CBY
|
C:OXJ5
|
1.4
|
88.2
|
1.0
|
FCC
|
C:OXJ5
|
2.2
|
88.6
|
1.0
|
FCA
|
C:OXJ5
|
2.2
|
89.8
|
1.0
|
CBW
|
C:OXJ5
|
2.4
|
86.1
|
1.0
|
CBX
|
C:OXJ5
|
3.0
|
83.6
|
1.0
|
CD1
|
A:LEU300
|
3.3
|
84.2
|
1.0
|
CB
|
C:DAR2
|
3.3
|
88.6
|
1.0
|
CBV
|
C:OXJ5
|
3.4
|
87.0
|
1.0
|
CD1
|
A:ILE277
|
3.5
|
82.6
|
1.0
|
O
|
C:DAR2
|
3.7
|
80.2
|
1.0
|
CG2
|
A:VAL281
|
3.9
|
91.9
|
1.0
|
CA
|
C:DAR2
|
4.0
|
86.1
|
1.0
|
CD
|
C:DAR2
|
4.2
|
96.5
|
1.0
|
C
|
C:DAR2
|
4.3
|
82.2
|
1.0
|
CBS
|
C:OXJ5
|
4.3
|
82.8
|
1.0
|
CG
|
C:DAR2
|
4.4
|
91.1
|
1.0
|
CG
|
A:LEU300
|
4.6
|
83.6
|
1.0
|
CBU
|
C:OXJ5
|
4.6
|
89.8
|
1.0
|
CG1
|
A:ILE277
|
4.6
|
81.5
|
1.0
|
CD1
|
A:ILE304
|
4.7
|
71.2
|
1.0
|
CD2
|
A:LEU300
|
4.8
|
84.3
|
1.0
|
CG1
|
A:ILE304
|
4.9
|
76.3
|
1.0
|
CBT
|
C:OXJ5
|
4.9
|
85.6
|
1.0
|
CD1
|
A:PHE280
|
5.0
|
93.8
|
1.0
|
|
Fluorine binding site 3 out
of 12 in 6pt2
Go back to
Fluorine Binding Sites List in 6pt2
Fluorine binding site 3 out
of 12 in the Crystal Structure of the Active Delta Opioid Receptor in Complex with the Peptide Agonist KGCHM07
Mono view
Stereo pair view
|
A full contact list of Fluorine with other atoms in the F binding
site number 3 of Crystal Structure of the Active Delta Opioid Receptor in Complex with the Peptide Agonist KGCHM07 within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
C:F5
b:88.6
occ:1.00
|
FCC
|
C:OXJ5
|
0.0
|
88.6
|
1.0
|
CBY
|
C:OXJ5
|
1.4
|
88.2
|
1.0
|
FCB
|
C:OXJ5
|
2.2
|
87.4
|
1.0
|
FCA
|
C:OXJ5
|
2.2
|
89.8
|
1.0
|
CBW
|
C:OXJ5
|
2.4
|
86.1
|
1.0
|
CBV
|
C:OXJ5
|
2.7
|
87.0
|
1.0
|
CD1
|
A:PHE280
|
3.4
|
93.8
|
1.0
|
C
|
A:PHE280
|
3.5
|
91.8
|
1.0
|
O
|
A:PHE280
|
3.6
|
91.0
|
1.0
|
N
|
A:VAL281
|
3.6
|
89.1
|
1.0
|
CBX
|
C:OXJ5
|
3.7
|
83.6
|
1.0
|
CB
|
A:TRP284
|
3.7
|
93.2
|
1.0
|
CA
|
A:VAL281
|
3.7
|
89.1
|
1.0
|
CG2
|
A:VAL281
|
3.8
|
91.9
|
1.0
|
CD1
|
A:LEU300
|
3.9
|
84.2
|
1.0
|
CB
|
A:PHE280
|
3.9
|
90.1
|
1.0
|
CG
|
A:PHE280
|
4.0
|
91.1
|
1.0
|
CBU
|
C:OXJ5
|
4.1
|
89.8
|
1.0
|
CG
|
A:TRP284
|
4.1
|
94.0
|
1.0
|
CE1
|
A:PHE280
|
4.2
|
94.4
|
1.0
|
CA
|
A:PHE280
|
4.3
|
88.8
|
1.0
|
CD1
|
A:ILE277
|
4.4
|
82.6
|
1.0
|
CB
|
A:VAL281
|
4.4
|
92.6
|
1.0
|
CD2
|
A:TRP284
|
4.5
|
93.9
|
1.0
|
CE3
|
A:TRP284
|
4.6
|
95.7
|
1.0
|
FCE
|
C:OXJ5
|
4.7
|
99.7
|
1.0
|
CBS
|
C:OXJ5
|
4.8
|
82.8
|
1.0
|
C
|
A:VAL281
|
4.9
|
94.6
|
1.0
|
CD1
|
A:TRP284
|
4.9
|
96.7
|
1.0
|
CBT
|
C:OXJ5
|
5.0
|
85.6
|
1.0
|
O
|
A:ILE277
|
5.0
|
88.2
|
1.0
|
CBZ
|
C:OXJ5
|
5.0
|
97.3
|
1.0
|
|
Fluorine binding site 4 out
of 12 in 6pt2
Go back to
Fluorine Binding Sites List in 6pt2
Fluorine binding site 4 out
of 12 in the Crystal Structure of the Active Delta Opioid Receptor in Complex with the Peptide Agonist KGCHM07
Mono view
Stereo pair view
|
A full contact list of Fluorine with other atoms in the F binding
site number 4 of Crystal Structure of the Active Delta Opioid Receptor in Complex with the Peptide Agonist KGCHM07 within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
C:F5
b:98.6
occ:1.00
|
FCD
|
C:OXJ5
|
0.0
|
98.6
|
1.0
|
CBZ
|
C:OXJ5
|
1.4
|
97.3
|
1.0
|
FCE
|
C:OXJ5
|
2.2
|
99.7
|
1.0
|
FCF
|
C:OXJ5
|
2.2
|
98.6
|
1.0
|
CBU
|
C:OXJ5
|
2.4
|
89.8
|
1.0
|
CBV
|
C:OXJ5
|
3.2
|
87.0
|
1.0
|
CD2
|
A:LEU300
|
3.3
|
84.3
|
1.0
|
CBT
|
C:OXJ5
|
3.3
|
85.6
|
1.0
|
CG2
|
A:VAL296
|
3.8
|
98.1
|
1.0
|
CE1
|
A:PHE280
|
4.0
|
94.4
|
1.0
|
CG
|
A:LEU300
|
4.2
|
83.6
|
1.0
|
CB
|
A:LEU300
|
4.2
|
79.7
|
1.0
|
CZ
|
A:PHE280
|
4.4
|
93.0
|
1.0
|
CD1
|
A:LEU300
|
4.5
|
84.2
|
1.0
|
CBW
|
C:OXJ5
|
4.5
|
86.1
|
1.0
|
CG2
|
A:ILE289
|
4.5
|
0.7
|
1.0
|
CBS
|
C:OXJ5
|
4.5
|
82.8
|
1.0
|
O
|
A:VAL296
|
4.7
|
0.5
|
1.0
|
CD1
|
A:TRP284
|
4.9
|
96.7
|
1.0
|
CB
|
A:VAL296
|
4.9
|
98.8
|
1.0
|
CA
|
A:ARG291
|
5.0
|
98.6
|
1.0
|
NE1
|
A:TRP284
|
5.0
|
95.6
|
1.0
|
|
Fluorine binding site 5 out
of 12 in 6pt2
Go back to
Fluorine Binding Sites List in 6pt2
Fluorine binding site 5 out
of 12 in the Crystal Structure of the Active Delta Opioid Receptor in Complex with the Peptide Agonist KGCHM07
Mono view
Stereo pair view
|
A full contact list of Fluorine with other atoms in the F binding
site number 5 of Crystal Structure of the Active Delta Opioid Receptor in Complex with the Peptide Agonist KGCHM07 within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
C:F5
b:99.7
occ:1.00
|
FCE
|
C:OXJ5
|
0.0
|
99.7
|
1.0
|
CBZ
|
C:OXJ5
|
1.4
|
97.3
|
1.0
|
FCD
|
C:OXJ5
|
2.2
|
98.6
|
1.0
|
FCF
|
C:OXJ5
|
2.3
|
98.6
|
1.0
|
CBU
|
C:OXJ5
|
2.3
|
89.8
|
1.0
|
CBV
|
C:OXJ5
|
2.8
|
87.0
|
1.0
|
CD1
|
A:TRP284
|
2.9
|
96.7
|
1.0
|
NE1
|
A:TRP284
|
3.4
|
95.6
|
1.0
|
CG2
|
A:ILE289
|
3.5
|
0.7
|
1.0
|
CBT
|
C:OXJ5
|
3.6
|
85.6
|
1.0
|
CE1
|
A:PHE280
|
3.6
|
94.4
|
1.0
|
CG
|
A:TRP284
|
3.7
|
94.0
|
1.0
|
CB
|
A:ILE289
|
3.8
|
0.4
|
1.0
|
CD1
|
A:ILE289
|
4.0
|
0.8
|
1.0
|
CBW
|
C:OXJ5
|
4.1
|
86.1
|
1.0
|
CB
|
A:TRP284
|
4.3
|
93.2
|
1.0
|
CD1
|
A:PHE280
|
4.3
|
93.8
|
1.0
|
CE2
|
A:TRP284
|
4.4
|
97.3
|
1.0
|
CG1
|
A:ILE289
|
4.5
|
0.7
|
1.0
|
CD2
|
A:TRP284
|
4.5
|
93.9
|
1.0
|
CZ
|
A:PHE280
|
4.6
|
93.0
|
1.0
|
CBS
|
C:OXJ5
|
4.7
|
82.8
|
1.0
|
FCC
|
C:OXJ5
|
4.7
|
88.6
|
1.0
|
CG2
|
A:VAL296
|
4.9
|
98.1
|
1.0
|
CBX
|
C:OXJ5
|
4.9
|
83.6
|
1.0
|
CA
|
A:TRP284
|
4.9
|
95.5
|
1.0
|
|
Fluorine binding site 6 out
of 12 in 6pt2
Go back to
Fluorine Binding Sites List in 6pt2
Fluorine binding site 6 out
of 12 in the Crystal Structure of the Active Delta Opioid Receptor in Complex with the Peptide Agonist KGCHM07
Mono view
Stereo pair view
|
A full contact list of Fluorine with other atoms in the F binding
site number 6 of Crystal Structure of the Active Delta Opioid Receptor in Complex with the Peptide Agonist KGCHM07 within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
C:F5
b:98.6
occ:1.00
|
FCF
|
C:OXJ5
|
0.0
|
98.6
|
1.0
|
CBZ
|
C:OXJ5
|
1.4
|
97.3
|
1.0
|
FCD
|
C:OXJ5
|
2.2
|
98.6
|
1.0
|
FCE
|
C:OXJ5
|
2.3
|
99.7
|
1.0
|
CBU
|
C:OXJ5
|
2.3
|
89.8
|
1.0
|
CBT
|
C:OXJ5
|
2.7
|
85.6
|
1.0
|
CG
|
A:ARG291
|
3.3
|
0.6
|
1.0
|
NE1
|
A:TRP284
|
3.4
|
95.6
|
1.0
|
CBV
|
C:OXJ5
|
3.6
|
87.0
|
1.0
|
CD
|
A:ARG291
|
3.7
|
0.2
|
1.0
|
CD1
|
A:TRP284
|
3.8
|
96.7
|
1.0
|
NE
|
A:ARG291
|
3.8
|
0.4
|
1.0
|
CBS
|
C:OXJ5
|
4.1
|
82.8
|
1.0
|
CA
|
A:ARG291
|
4.2
|
98.6
|
1.0
|
CB
|
A:ARG291
|
4.2
|
0.2
|
1.0
|
CE2
|
A:TRP284
|
4.3
|
97.3
|
1.0
|
CZ
|
A:ARG291
|
4.4
|
0.4
|
1.0
|
CG2
|
A:ILE289
|
4.6
|
0.7
|
1.0
|
CBW
|
C:OXJ5
|
4.7
|
86.1
|
1.0
|
CG
|
A:TRP284
|
4.8
|
94.0
|
1.0
|
N
|
A:ARG291
|
4.8
|
99.0
|
1.0
|
O
|
A:ILE289
|
4.9
|
0.9
|
1.0
|
CD2
|
A:LEU300
|
4.9
|
84.3
|
1.0
|
CB
|
A:ILE289
|
4.9
|
0.4
|
1.0
|
NH1
|
A:ARG291
|
4.9
|
0.3
|
1.0
|
CBX
|
C:OXJ5
|
4.9
|
83.6
|
1.0
|
CBR
|
C:OXJ5
|
4.9
|
80.2
|
1.0
|
CZ2
|
A:TRP284
|
5.0
|
96.8
|
1.0
|
|
Fluorine binding site 7 out
of 12 in 6pt2
Go back to
Fluorine Binding Sites List in 6pt2
Fluorine binding site 7 out
of 12 in the Crystal Structure of the Active Delta Opioid Receptor in Complex with the Peptide Agonist KGCHM07
Mono view
Stereo pair view
|
A full contact list of Fluorine with other atoms in the F binding
site number 7 of Crystal Structure of the Active Delta Opioid Receptor in Complex with the Peptide Agonist KGCHM07 within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
D:F5
b:0.2
occ:1.00
|
FCA
|
D:OXJ5
|
0.0
|
0.2
|
1.0
|
CBY
|
D:OXJ5
|
1.4
|
0.1
|
1.0
|
FCC
|
D:OXJ5
|
2.2
|
0.0
|
1.0
|
FCB
|
D:OXJ5
|
2.2
|
0.2
|
1.0
|
CBW
|
D:OXJ5
|
2.3
|
0.2
|
1.0
|
CBX
|
D:OXJ5
|
2.9
|
97.7
|
1.0
|
CE3
|
B:TRP284
|
3.2
|
98.6
|
1.0
|
CG2
|
B:VAL281
|
3.3
|
93.0
|
1.0
|
NH1
|
D:DAR2
|
3.3
|
94.7
|
1.0
|
CBV
|
D:OXJ5
|
3.5
|
0.7
|
1.0
|
CZ3
|
B:TRP284
|
3.7
|
0.4
|
1.0
|
CD2
|
B:TRP284
|
3.9
|
97.5
|
1.0
|
CA
|
B:VAL281
|
3.9
|
90.7
|
1.0
|
CB
|
B:VAL281
|
3.9
|
93.5
|
1.0
|
CB
|
D:DAR2
|
3.9
|
90.4
|
1.0
|
CD
|
D:DAR2
|
4.0
|
97.3
|
1.0
|
CG1
|
B:VAL281
|
4.2
|
93.2
|
1.0
|
CBS
|
D:OXJ5
|
4.2
|
94.8
|
1.0
|
O
|
D:DAR2
|
4.5
|
78.2
|
1.0
|
CZ
|
D:DAR2
|
4.5
|
97.2
|
1.0
|
CG
|
B:TRP284
|
4.5
|
97.6
|
1.0
|
CB
|
B:TRP284
|
4.5
|
96.6
|
1.0
|
CH2
|
B:TRP284
|
4.6
|
0.5
|
1.0
|
CBU
|
D:OXJ5
|
4.6
|
0.9
|
1.0
|
CG
|
D:DAR2
|
4.7
|
94.1
|
1.0
|
N
|
B:VAL281
|
4.7
|
90.6
|
1.0
|
NE
|
D:DAR2
|
4.7
|
97.5
|
1.0
|
CE2
|
B:TRP284
|
4.8
|
0.7
|
1.0
|
O
|
B:VAL281
|
4.8
|
95.5
|
1.0
|
CBT
|
D:OXJ5
|
4.9
|
98.0
|
1.0
|
C
|
B:VAL281
|
4.9
|
95.2
|
1.0
|
|
Fluorine binding site 8 out
of 12 in 6pt2
Go back to
Fluorine Binding Sites List in 6pt2
Fluorine binding site 8 out
of 12 in the Crystal Structure of the Active Delta Opioid Receptor in Complex with the Peptide Agonist KGCHM07
Mono view
Stereo pair view
|
A full contact list of Fluorine with other atoms in the F binding
site number 8 of Crystal Structure of the Active Delta Opioid Receptor in Complex with the Peptide Agonist KGCHM07 within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
D:F5
b:0.2
occ:1.00
|
FCB
|
D:OXJ5
|
0.0
|
0.2
|
1.0
|
CBY
|
D:OXJ5
|
1.4
|
0.1
|
1.0
|
FCA
|
D:OXJ5
|
2.2
|
0.2
|
1.0
|
FCC
|
D:OXJ5
|
2.2
|
0.0
|
1.0
|
CBW
|
D:OXJ5
|
2.4
|
0.2
|
1.0
|
CBX
|
D:OXJ5
|
3.0
|
97.7
|
1.0
|
CD1
|
B:LEU300
|
3.4
|
90.8
|
1.0
|
CB
|
D:DAR2
|
3.4
|
90.4
|
1.0
|
CBV
|
D:OXJ5
|
3.4
|
0.7
|
1.0
|
O
|
D:DAR2
|
3.5
|
78.2
|
1.0
|
CD1
|
B:ILE277
|
3.6
|
88.7
|
1.0
|
CG2
|
B:VAL281
|
3.8
|
93.0
|
1.0
|
CA
|
D:DAR2
|
3.9
|
85.0
|
1.0
|
C
|
D:DAR2
|
4.1
|
81.0
|
1.0
|
CBS
|
D:OXJ5
|
4.3
|
94.8
|
1.0
|
CBU
|
D:OXJ5
|
4.6
|
0.9
|
1.0
|
CG1
|
B:ILE277
|
4.6
|
86.5
|
1.0
|
CG
|
B:LEU300
|
4.6
|
91.8
|
1.0
|
CG
|
D:DAR2
|
4.7
|
94.1
|
1.0
|
CD
|
D:DAR2
|
4.7
|
97.3
|
1.0
|
NH1
|
D:DAR2
|
4.8
|
94.7
|
1.0
|
CD2
|
B:LEU300
|
4.9
|
92.7
|
1.0
|
CA
|
B:VAL281
|
4.9
|
90.7
|
1.0
|
CB
|
B:VAL281
|
4.9
|
93.5
|
1.0
|
CD1
|
B:ILE304
|
5.0
|
85.0
|
1.0
|
CBT
|
D:OXJ5
|
5.0
|
98.0
|
1.0
|
|
Fluorine binding site 9 out
of 12 in 6pt2
Go back to
Fluorine Binding Sites List in 6pt2
Fluorine binding site 9 out
of 12 in the Crystal Structure of the Active Delta Opioid Receptor in Complex with the Peptide Agonist KGCHM07
Mono view
Stereo pair view
|
A full contact list of Fluorine with other atoms in the F binding
site number 9 of Crystal Structure of the Active Delta Opioid Receptor in Complex with the Peptide Agonist KGCHM07 within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
D:F5
b:0.0
occ:1.00
|
FCC
|
D:OXJ5
|
0.0
|
0.0
|
1.0
|
CBY
|
D:OXJ5
|
1.4
|
0.1
|
1.0
|
FCA
|
D:OXJ5
|
2.2
|
0.2
|
1.0
|
FCB
|
D:OXJ5
|
2.2
|
0.2
|
1.0
|
CBW
|
D:OXJ5
|
2.4
|
0.2
|
1.0
|
CBV
|
D:OXJ5
|
2.7
|
0.7
|
1.0
|
CD1
|
B:PHE280
|
3.5
|
95.2
|
1.0
|
CA
|
B:VAL281
|
3.5
|
90.7
|
1.0
|
N
|
B:VAL281
|
3.6
|
90.6
|
1.0
|
CBX
|
D:OXJ5
|
3.7
|
97.7
|
1.0
|
O
|
B:PHE280
|
3.7
|
95.5
|
1.0
|
C
|
B:PHE280
|
3.7
|
95.0
|
1.0
|
CG2
|
B:VAL281
|
3.7
|
93.0
|
1.0
|
CB
|
B:TRP284
|
3.7
|
96.6
|
1.0
|
CD1
|
B:LEU300
|
3.9
|
90.8
|
1.0
|
CBU
|
D:OXJ5
|
4.1
|
0.9
|
1.0
|
CG
|
B:TRP284
|
4.1
|
97.6
|
1.0
|
CG
|
B:PHE280
|
4.2
|
92.5
|
1.0
|
CB
|
B:VAL281
|
4.2
|
93.5
|
1.0
|
CE1
|
B:PHE280
|
4.2
|
96.7
|
1.0
|
CB
|
B:PHE280
|
4.2
|
91.1
|
1.0
|
CE3
|
B:TRP284
|
4.3
|
98.6
|
1.0
|
CD2
|
B:TRP284
|
4.3
|
97.5
|
1.0
|
CD1
|
B:ILE277
|
4.5
|
88.7
|
1.0
|
C
|
B:VAL281
|
4.6
|
95.2
|
1.0
|
FCE
|
D:OXJ5
|
4.6
|
0.5
|
1.0
|
CA
|
B:PHE280
|
4.6
|
89.8
|
1.0
|
O
|
B:VAL281
|
4.8
|
95.5
|
1.0
|
CBS
|
D:OXJ5
|
4.8
|
94.8
|
1.0
|
O
|
B:ILE277
|
4.9
|
90.8
|
1.0
|
CBT
|
D:OXJ5
|
4.9
|
98.0
|
1.0
|
CBZ
|
D:OXJ5
|
5.0
|
0.2
|
1.0
|
|
Fluorine binding site 10 out
of 12 in 6pt2
Go back to
Fluorine Binding Sites List in 6pt2
Fluorine binding site 10 out
of 12 in the Crystal Structure of the Active Delta Opioid Receptor in Complex with the Peptide Agonist KGCHM07
Mono view
Stereo pair view
|
A full contact list of Fluorine with other atoms in the F binding
site number 10 of Crystal Structure of the Active Delta Opioid Receptor in Complex with the Peptide Agonist KGCHM07 within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
D:F5
b:0.4
occ:1.00
|
FCD
|
D:OXJ5
|
0.0
|
0.4
|
1.0
|
CBZ
|
D:OXJ5
|
1.4
|
0.2
|
1.0
|
FCE
|
D:OXJ5
|
2.2
|
0.5
|
1.0
|
FCF
|
D:OXJ5
|
2.2
|
0.4
|
1.0
|
CBU
|
D:OXJ5
|
2.3
|
0.9
|
1.0
|
CBT
|
D:OXJ5
|
3.1
|
98.0
|
1.0
|
CD2
|
B:LEU300
|
3.2
|
92.7
|
1.0
|
CBV
|
D:OXJ5
|
3.3
|
0.7
|
1.0
|
CBS
|
D:OXJ5
|
4.3
|
94.8
|
1.0
|
CG
|
B:LEU300
|
4.3
|
91.8
|
1.0
|
CG1
|
B:VAL296
|
4.4
|
0.8
|
1.0
|
CBW
|
D:OXJ5
|
4.5
|
0.2
|
1.0
|
CG2
|
B:ILE289
|
4.5
|
0.7
|
1.0
|
CE1
|
B:PHE280
|
4.6
|
96.7
|
1.0
|
CG
|
B:ARG291
|
4.6
|
0.6
|
1.0
|
CA
|
B:ARG291
|
4.6
|
0.0
|
1.0
|
CB
|
B:LEU300
|
4.6
|
89.1
|
1.0
|
CD1
|
B:TRP284
|
4.7
|
0.8
|
1.0
|
NE1
|
B:TRP284
|
4.7
|
0.5
|
1.0
|
CD1
|
B:LEU300
|
4.8
|
90.8
|
1.0
|
CB
|
B:ARG291
|
4.8
|
0.6
|
1.0
|
CZ
|
B:PHE280
|
4.8
|
96.5
|
1.0
|
CBX
|
D:OXJ5
|
4.9
|
97.7
|
1.0
|
|
Reference:
T.Claff,
J.Yu,
V.Blais,
N.Patel,
C.Martin,
L.Wu,
G.W.Han,
B.J.Holleran,
O.Van Der Poorten,
K.L.White,
M.A.Hanson,
P.Sarret,
L.Gendron,
V.Cherezov,
V.Katritch,
S.Ballet,
Z.J.Liu,
C.E.Muller,
R.C.Stevens.
Elucidating the Active Delta-Opioid Receptor Crystal Structure with Peptide and Small-Molecule Agonists. Sci Adv V. 5 X9115 2019.
ISSN: ESSN 2375-2548
PubMed: 31807708
DOI: 10.1126/SCIADV.AAX9115
Page generated: Fri Aug 2 00:29:27 2024
|