Fluorine in PDB 6q2w: Crystal Structure of Human Ror Gamma Lbd in Complex with A Quinoline Sulfonamide Inverse Agonist
Protein crystallography data
The structure of Crystal Structure of Human Ror Gamma Lbd in Complex with A Quinoline Sulfonamide Inverse Agonist, PDB code: 6q2w
was solved by
F.Ciesielski,
J.Amaudrut,
M.A.Argiriadi,
M.Barth,
E.C.Breinlinger,
D.J.Calderwood,
K.P.Cusack,
M.E.Kort,
C.Montalbetti,
D.Potin,
O.Poupardin,
L.Spitzer,
with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:
Resolution Low / High (Å)
|
46.20 /
1.99
|
Space group
|
C 1 2 1
|
Cell size a, b, c (Å), α, β, γ (°)
|
127.120,
56.200,
81.400,
90.00,
125.06,
90.00
|
R / Rfree (%)
|
18.7 /
23.2
|
Other elements in 6q2w:
The structure of Crystal Structure of Human Ror Gamma Lbd in Complex with A Quinoline Sulfonamide Inverse Agonist also contains other interesting chemical elements:
Fluorine Binding Sites:
The binding sites of Fluorine atom in the Crystal Structure of Human Ror Gamma Lbd in Complex with A Quinoline Sulfonamide Inverse Agonist
(pdb code 6q2w). This binding sites where shown within
5.0 Angstroms radius around Fluorine atom.
In total 6 binding sites of Fluorine where determined in the
Crystal Structure of Human Ror Gamma Lbd in Complex with A Quinoline Sulfonamide Inverse Agonist, PDB code: 6q2w:
Jump to Fluorine binding site number:
1;
2;
3;
4;
5;
6;
Fluorine binding site 1 out
of 6 in 6q2w
Go back to
Fluorine Binding Sites List in 6q2w
Fluorine binding site 1 out
of 6 in the Crystal Structure of Human Ror Gamma Lbd in Complex with A Quinoline Sulfonamide Inverse Agonist
Mono view
Stereo pair view
|
A full contact list of Fluorine with other atoms in the F binding
site number 1 of Crystal Structure of Human Ror Gamma Lbd in Complex with A Quinoline Sulfonamide Inverse Agonist within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:F1001
b:41.5
occ:1.00
|
F22
|
A:HBW1001
|
0.0
|
41.5
|
1.0
|
C21
|
A:HBW1001
|
1.3
|
42.3
|
1.0
|
F23
|
A:HBW1001
|
2.1
|
43.6
|
1.0
|
F24
|
A:HBW1001
|
2.2
|
41.1
|
1.0
|
C18
|
A:HBW1001
|
2.3
|
38.8
|
1.0
|
N17
|
A:HBW1001
|
2.9
|
34.1
|
1.0
|
C19
|
A:HBW1001
|
3.4
|
39.2
|
1.0
|
CG1
|
A:VAL361
|
3.4
|
32.3
|
1.0
|
CE
|
A:MET365
|
3.6
|
50.8
|
1.0
|
CD1
|
A:LEU324
|
3.7
|
46.1
|
1.0
|
SD
|
A:MET358
|
3.9
|
44.3
|
1.0
|
N
|
A:LEU362
|
4.0
|
32.8
|
1.0
|
CB
|
A:VAL361
|
4.0
|
33.2
|
1.0
|
CA
|
A:LEU362
|
4.1
|
32.1
|
1.0
|
C16
|
A:HBW1001
|
4.2
|
45.1
|
1.0
|
O
|
A:MET358
|
4.2
|
32.0
|
1.0
|
C
|
A:VAL361
|
4.3
|
33.8
|
1.0
|
CB
|
A:LEU362
|
4.4
|
32.1
|
1.0
|
CG
|
A:MET358
|
4.4
|
42.8
|
1.0
|
CG
|
A:LEU324
|
4.6
|
43.0
|
1.0
|
C20
|
A:HBW1001
|
4.6
|
40.6
|
1.0
|
O
|
A:VAL361
|
4.7
|
31.2
|
1.0
|
CA
|
A:VAL361
|
4.8
|
33.2
|
1.0
|
C15
|
A:HBW1001
|
4.9
|
42.2
|
1.0
|
CD1
|
A:LEU362
|
5.0
|
38.7
|
1.0
|
|
Fluorine binding site 2 out
of 6 in 6q2w
Go back to
Fluorine Binding Sites List in 6q2w
Fluorine binding site 2 out
of 6 in the Crystal Structure of Human Ror Gamma Lbd in Complex with A Quinoline Sulfonamide Inverse Agonist
Mono view
Stereo pair view
|
A full contact list of Fluorine with other atoms in the F binding
site number 2 of Crystal Structure of Human Ror Gamma Lbd in Complex with A Quinoline Sulfonamide Inverse Agonist within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:F1001
b:41.1
occ:1.00
|
F24
|
A:HBW1001
|
0.0
|
41.1
|
1.0
|
C21
|
A:HBW1001
|
1.3
|
42.3
|
1.0
|
F22
|
A:HBW1001
|
2.2
|
41.5
|
1.0
|
F23
|
A:HBW1001
|
2.2
|
43.6
|
1.0
|
C18
|
A:HBW1001
|
2.3
|
38.8
|
1.0
|
N17
|
A:HBW1001
|
2.7
|
34.1
|
1.0
|
CD1
|
A:LEU362
|
3.3
|
38.7
|
1.0
|
CE
|
A:MET365
|
3.3
|
50.8
|
1.0
|
C19
|
A:HBW1001
|
3.5
|
39.2
|
1.0
|
CB
|
A:LEU362
|
3.7
|
32.1
|
1.0
|
CA
|
A:LEU362
|
3.8
|
32.1
|
1.0
|
C16
|
A:HBW1001
|
4.0
|
45.1
|
1.0
|
CG
|
A:LEU362
|
4.1
|
35.5
|
1.0
|
CG2
|
A:ILE400
|
4.1
|
37.1
|
1.0
|
CD1
|
A:ILE400
|
4.1
|
36.6
|
1.0
|
SD
|
A:MET365
|
4.2
|
54.7
|
1.0
|
CG1
|
A:ILE400
|
4.4
|
37.4
|
1.0
|
N
|
A:LEU362
|
4.4
|
32.8
|
1.0
|
C20
|
A:HBW1001
|
4.6
|
40.6
|
1.0
|
O10
|
A:HBW1001
|
4.8
|
46.3
|
1.0
|
CD2
|
A:LEU362
|
4.8
|
37.5
|
1.0
|
C15
|
A:HBW1001
|
4.9
|
42.2
|
1.0
|
SG
|
A:CYS476
|
4.9
|
38.7
|
0.5
|
C11
|
A:HBW1001
|
4.9
|
47.0
|
1.0
|
CB
|
A:ILE400
|
4.9
|
35.9
|
1.0
|
|
Fluorine binding site 3 out
of 6 in 6q2w
Go back to
Fluorine Binding Sites List in 6q2w
Fluorine binding site 3 out
of 6 in the Crystal Structure of Human Ror Gamma Lbd in Complex with A Quinoline Sulfonamide Inverse Agonist
Mono view
Stereo pair view
|
A full contact list of Fluorine with other atoms in the F binding
site number 3 of Crystal Structure of Human Ror Gamma Lbd in Complex with A Quinoline Sulfonamide Inverse Agonist within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:F1001
b:43.6
occ:1.00
|
F23
|
A:HBW1001
|
0.0
|
43.6
|
1.0
|
C21
|
A:HBW1001
|
1.3
|
42.3
|
1.0
|
F22
|
A:HBW1001
|
2.1
|
41.5
|
1.0
|
F24
|
A:HBW1001
|
2.2
|
41.1
|
1.0
|
C18
|
A:HBW1001
|
2.3
|
38.8
|
1.0
|
C19
|
A:HBW1001
|
2.6
|
39.2
|
1.0
|
SG
|
A:CYS476
|
3.2
|
38.7
|
0.5
|
N17
|
A:HBW1001
|
3.5
|
34.1
|
1.0
|
CB
|
A:LEU362
|
3.6
|
32.1
|
1.0
|
CG
|
A:MET358
|
3.6
|
42.8
|
1.0
|
O
|
A:MET358
|
3.6
|
32.0
|
1.0
|
SD
|
A:MET358
|
4.0
|
44.3
|
1.0
|
C20
|
A:HBW1001
|
4.0
|
40.6
|
1.0
|
CA
|
A:CYS476
|
4.1
|
47.6
|
0.5
|
CA
|
A:CYS476
|
4.1
|
44.2
|
0.5
|
CA
|
A:LEU362
|
4.1
|
32.1
|
1.0
|
CB
|
A:CYS476
|
4.1
|
47.3
|
0.5
|
CB
|
A:CYS476
|
4.1
|
40.5
|
0.5
|
N
|
A:LEU362
|
4.2
|
32.8
|
1.0
|
CD1
|
A:LEU362
|
4.3
|
38.7
|
1.0
|
CG
|
A:LEU362
|
4.4
|
35.5
|
1.0
|
C
|
A:MET358
|
4.5
|
33.0
|
1.0
|
C16
|
A:HBW1001
|
4.6
|
45.1
|
1.0
|
CD2
|
A:LEU362
|
4.7
|
37.5
|
1.0
|
CB
|
A:MET358
|
4.8
|
34.0
|
1.0
|
C15
|
A:HBW1001
|
4.9
|
42.2
|
1.0
|
N25
|
A:HBW1001
|
4.9
|
45.1
|
1.0
|
O
|
A:CYS476
|
4.9
|
57.4
|
1.0
|
N
|
A:CYS476
|
4.9
|
43.4
|
1.0
|
O
|
A:LEU475
|
5.0
|
44.2
|
1.0
|
|
Fluorine binding site 4 out
of 6 in 6q2w
Go back to
Fluorine Binding Sites List in 6q2w
Fluorine binding site 4 out
of 6 in the Crystal Structure of Human Ror Gamma Lbd in Complex with A Quinoline Sulfonamide Inverse Agonist
Mono view
Stereo pair view
|
A full contact list of Fluorine with other atoms in the F binding
site number 4 of Crystal Structure of Human Ror Gamma Lbd in Complex with A Quinoline Sulfonamide Inverse Agonist within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:F1001
b:47.9
occ:1.00
|
F22
|
B:HBW1001
|
0.0
|
47.9
|
1.0
|
C21
|
B:HBW1001
|
1.3
|
44.7
|
1.0
|
F24
|
B:HBW1001
|
2.1
|
44.7
|
1.0
|
F23
|
B:HBW1001
|
2.1
|
46.7
|
1.0
|
C18
|
B:HBW1001
|
2.4
|
38.6
|
1.0
|
N17
|
B:HBW1001
|
2.9
|
34.6
|
1.0
|
CG1
|
B:VAL361
|
3.4
|
30.6
|
1.0
|
CE
|
B:MET365
|
3.5
|
55.8
|
1.0
|
C19
|
B:HBW1001
|
3.5
|
34.5
|
1.0
|
N
|
B:LEU362
|
4.0
|
30.4
|
1.0
|
CA
|
B:LEU362
|
4.1
|
29.9
|
1.0
|
CB
|
B:VAL361
|
4.1
|
29.6
|
1.0
|
C16
|
B:HBW1001
|
4.2
|
41.8
|
1.0
|
SD
|
B:MET358
|
4.2
|
43.9
|
1.0
|
C
|
B:VAL361
|
4.2
|
30.8
|
1.0
|
C36
|
B:HBW1001
|
4.4
|
54.1
|
1.0
|
CD1
|
B:LEU324
|
4.5
|
58.8
|
1.0
|
CB
|
B:LEU362
|
4.5
|
33.7
|
1.0
|
O
|
B:MET358
|
4.6
|
28.6
|
1.0
|
O
|
B:VAL361
|
4.6
|
29.4
|
1.0
|
C20
|
B:HBW1001
|
4.7
|
39.4
|
1.0
|
CA
|
B:VAL361
|
4.8
|
30.9
|
1.0
|
CG
|
B:LEU324
|
4.9
|
50.5
|
1.0
|
CG
|
B:MET358
|
4.9
|
37.7
|
1.0
|
O10
|
B:HBW1001
|
4.9
|
48.0
|
1.0
|
SD
|
B:MET365
|
4.9
|
55.1
|
1.0
|
C15
|
B:HBW1001
|
5.0
|
38.3
|
1.0
|
|
Fluorine binding site 5 out
of 6 in 6q2w
Go back to
Fluorine Binding Sites List in 6q2w
Fluorine binding site 5 out
of 6 in the Crystal Structure of Human Ror Gamma Lbd in Complex with A Quinoline Sulfonamide Inverse Agonist
Mono view
Stereo pair view
|
A full contact list of Fluorine with other atoms in the F binding
site number 5 of Crystal Structure of Human Ror Gamma Lbd in Complex with A Quinoline Sulfonamide Inverse Agonist within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:F1001
b:44.7
occ:1.00
|
F24
|
B:HBW1001
|
0.0
|
44.7
|
1.0
|
C21
|
B:HBW1001
|
1.3
|
44.7
|
1.0
|
F22
|
B:HBW1001
|
2.1
|
47.9
|
1.0
|
F23
|
B:HBW1001
|
2.2
|
46.7
|
1.0
|
C18
|
B:HBW1001
|
2.3
|
38.6
|
1.0
|
N17
|
B:HBW1001
|
2.9
|
34.6
|
1.0
|
CD1
|
B:LEU362
|
3.3
|
39.9
|
1.0
|
C19
|
B:HBW1001
|
3.4
|
34.5
|
1.0
|
CE
|
B:MET365
|
3.6
|
55.8
|
1.0
|
CB
|
B:LEU362
|
3.6
|
33.7
|
1.0
|
CA
|
B:LEU362
|
3.7
|
29.9
|
1.0
|
CG
|
B:LEU362
|
4.0
|
38.1
|
1.0
|
CD1
|
B:ILE400
|
4.1
|
32.7
|
1.0
|
C16
|
B:HBW1001
|
4.2
|
41.8
|
1.0
|
CG1
|
B:ILE400
|
4.3
|
33.5
|
1.0
|
N
|
B:LEU362
|
4.3
|
30.4
|
1.0
|
CG2
|
B:ILE400
|
4.4
|
31.1
|
1.0
|
SD
|
B:MET365
|
4.4
|
55.1
|
1.0
|
C20
|
B:HBW1001
|
4.6
|
39.4
|
1.0
|
CD2
|
B:LEU362
|
4.8
|
38.6
|
1.0
|
O10
|
B:HBW1001
|
4.9
|
48.0
|
1.0
|
C15
|
B:HBW1001
|
4.9
|
38.3
|
1.0
|
C
|
B:LEU362
|
5.0
|
31.5
|
1.0
|
CB
|
B:ILE400
|
5.0
|
33.0
|
1.0
|
C
|
B:VAL361
|
5.0
|
30.8
|
1.0
|
|
Fluorine binding site 6 out
of 6 in 6q2w
Go back to
Fluorine Binding Sites List in 6q2w
Fluorine binding site 6 out
of 6 in the Crystal Structure of Human Ror Gamma Lbd in Complex with A Quinoline Sulfonamide Inverse Agonist
Mono view
Stereo pair view
|
A full contact list of Fluorine with other atoms in the F binding
site number 6 of Crystal Structure of Human Ror Gamma Lbd in Complex with A Quinoline Sulfonamide Inverse Agonist within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:F1001
b:46.7
occ:1.00
|
F23
|
B:HBW1001
|
0.0
|
46.7
|
1.0
|
C21
|
B:HBW1001
|
1.3
|
44.7
|
1.0
|
F22
|
B:HBW1001
|
2.1
|
47.9
|
1.0
|
F24
|
B:HBW1001
|
2.2
|
44.7
|
1.0
|
C18
|
B:HBW1001
|
2.3
|
38.6
|
1.0
|
C19
|
B:HBW1001
|
2.7
|
34.5
|
1.0
|
SG
|
B:CYS476
|
3.5
|
55.5
|
1.0
|
CG
|
B:MET358
|
3.5
|
37.7
|
1.0
|
O
|
B:MET358
|
3.5
|
28.6
|
1.0
|
N17
|
B:HBW1001
|
3.5
|
34.6
|
1.0
|
SD
|
B:MET358
|
3.6
|
43.9
|
1.0
|
CB
|
B:LEU362
|
3.6
|
33.7
|
1.0
|
N
|
B:LEU362
|
4.0
|
30.4
|
1.0
|
CA
|
B:LEU362
|
4.0
|
29.9
|
1.0
|
C20
|
B:HBW1001
|
4.1
|
39.4
|
1.0
|
C
|
B:MET358
|
4.4
|
33.9
|
1.0
|
CD1
|
B:LEU362
|
4.5
|
39.9
|
1.0
|
CG
|
B:LEU362
|
4.6
|
38.1
|
1.0
|
CA
|
B:CYS476
|
4.6
|
54.5
|
1.0
|
CB
|
B:CYS476
|
4.6
|
49.8
|
1.0
|
CG1
|
B:VAL361
|
4.6
|
30.6
|
1.0
|
C16
|
B:HBW1001
|
4.7
|
41.8
|
1.0
|
CB
|
B:MET358
|
4.7
|
33.9
|
1.0
|
CB
|
B:VAL361
|
4.8
|
29.6
|
1.0
|
C
|
B:VAL361
|
4.8
|
30.8
|
1.0
|
N25
|
B:HBW1001
|
4.9
|
44.8
|
1.0
|
CA
|
B:MET358
|
4.9
|
33.6
|
1.0
|
C15
|
B:HBW1001
|
4.9
|
38.3
|
1.0
|
O
|
B:LEU475
|
4.9
|
49.6
|
1.0
|
CD2
|
B:LEU362
|
5.0
|
38.6
|
1.0
|
|
Reference:
J.Amaudrut,
M.A.Argiriadi,
M.Barth,
E.C.Breinlinger,
D.Bressac,
P.Broqua,
D.J.Calderwood,
M.Chatar,
K.P.Cusack,
S.B.Gauld,
S.Jacquet,
R.V.Kamath,
M.E.Kort,
V.Lepais,
J.M.Luccarini,
P.Masson,
C.Montalbetti,
L.Mounier,
D.Potin,
O.Poupardin,
S.Rouaud,
L.Spitzer,
C.D.Wallace.
Discovery of Novel Quinoline Sulphonamide Derivatives As Potent, Selective and Orally Active Ror Gamma Inverse Agonists. Bioorg.Med.Chem.Lett. V. 29 1799 2019.
ISSN: ESSN 1464-3405
PubMed: 31101472
DOI: 10.1016/J.BMCL.2019.05.015
Page generated: Fri Aug 2 00:41:10 2024
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