Fluorine in PDB 6qem: E. Coli Dnabc Complex Bound to Ssdna
Enzymatic activity of E. Coli Dnabc Complex Bound to Ssdna
All present enzymatic activity of E. Coli Dnabc Complex Bound to Ssdna:
3.6.4.12;
Other elements in 6qem:
The structure of E. Coli Dnabc Complex Bound to Ssdna also contains other interesting chemical elements:
Fluorine Binding Sites:
Pages:
>>> Page 1 <<<
Page 2, Binding sites: 11 -
15;
Binding sites:
The binding sites of Fluorine atom in the E. Coli Dnabc Complex Bound to Ssdna
(pdb code 6qem). This binding sites where shown within
5.0 Angstroms radius around Fluorine atom.
In total 15 binding sites of Fluorine where determined in the
E. Coli Dnabc Complex Bound to Ssdna, PDB code: 6qem:
Jump to Fluorine binding site number:
1;
2;
3;
4;
5;
6;
7;
8;
9;
10;
Fluorine binding site 1 out
of 15 in 6qem
Go back to
Fluorine Binding Sites List in 6qem
Fluorine binding site 1 out
of 15 in the E. Coli Dnabc Complex Bound to Ssdna
Mono view
Stereo pair view
|
A full contact list of Fluorine with other atoms in the F binding
site number 1 of E. Coli Dnabc Complex Bound to Ssdna within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:F1001
b:37.9
occ:1.00
|
F1
|
A:08T1001
|
0.0
|
37.9
|
1.0
|
BE
|
A:08T1001
|
1.4
|
37.9
|
1.0
|
O3B
|
A:08T1001
|
2.2
|
37.9
|
1.0
|
F2
|
A:08T1001
|
2.2
|
37.9
|
1.0
|
F3
|
A:08T1001
|
2.2
|
37.9
|
1.0
|
HZ1
|
F:LYS440
|
2.6
|
16.7
|
1.0
|
HH21
|
F:ARG442
|
2.7
|
21.7
|
1.0
|
HD3
|
F:ARG442
|
3.0
|
21.7
|
1.0
|
PB
|
A:08T1001
|
3.4
|
37.9
|
1.0
|
OE2
|
A:GLU262
|
3.4
|
22.0
|
1.0
|
HB3
|
A:PRO233
|
3.4
|
20.8
|
1.0
|
NH2
|
F:ARG442
|
3.4
|
21.7
|
1.0
|
NZ
|
F:LYS440
|
3.5
|
16.7
|
1.0
|
HE3
|
F:LYS440
|
3.6
|
16.7
|
1.0
|
O3A
|
A:08T1001
|
3.7
|
37.9
|
1.0
|
HE2
|
F:LYS440
|
3.7
|
16.7
|
1.0
|
HH22
|
F:ARG442
|
3.7
|
21.7
|
1.0
|
HA
|
A:PRO233
|
3.8
|
20.8
|
1.0
|
CE
|
F:LYS440
|
3.8
|
16.7
|
1.0
|
O2B
|
A:08T1001
|
3.9
|
37.9
|
1.0
|
CD
|
F:ARG442
|
3.9
|
21.7
|
1.0
|
HZ3
|
F:LYS440
|
3.9
|
16.7
|
1.0
|
HG2
|
F:ARG442
|
3.9
|
21.7
|
1.0
|
O
|
A:PRO233
|
3.9
|
20.8
|
1.0
|
HZ2
|
F:LYS440
|
3.9
|
16.7
|
1.0
|
HA
|
F:GLN410
|
4.0
|
17.7
|
1.0
|
O
|
F:GLN410
|
4.0
|
17.7
|
1.0
|
CB
|
A:PRO233
|
4.2
|
20.8
|
1.0
|
HG3
|
F:ARG442
|
4.2
|
21.7
|
1.0
|
CG
|
F:ARG442
|
4.3
|
21.7
|
1.0
|
CA
|
A:PRO233
|
4.3
|
20.8
|
1.0
|
MG
|
A:MG1002
|
4.3
|
10.6
|
1.0
|
CD
|
A:GLU262
|
4.4
|
22.0
|
1.0
|
CZ
|
F:ARG442
|
4.4
|
21.7
|
1.0
|
C
|
A:PRO233
|
4.4
|
20.8
|
1.0
|
HD2
|
F:ARG442
|
4.5
|
21.7
|
1.0
|
HZ1
|
A:LYS237
|
4.6
|
37.9
|
1.0
|
NE
|
F:ARG442
|
4.6
|
21.7
|
1.0
|
OE1
|
A:GLU262
|
4.6
|
22.0
|
1.0
|
O1B
|
A:08T1001
|
4.6
|
37.9
|
1.0
|
HZ3
|
A:LYS237
|
4.6
|
37.9
|
1.0
|
HB2
|
A:PRO233
|
4.7
|
20.8
|
1.0
|
C
|
F:GLN410
|
4.7
|
17.7
|
1.0
|
O
|
F:GLU409
|
4.7
|
16.5
|
1.0
|
CA
|
F:GLN410
|
4.8
|
17.7
|
1.0
|
|
Fluorine binding site 2 out
of 15 in 6qem
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Fluorine Binding Sites List in 6qem
Fluorine binding site 2 out
of 15 in the E. Coli Dnabc Complex Bound to Ssdna
Mono view
Stereo pair view
|
A full contact list of Fluorine with other atoms in the F binding
site number 2 of E. Coli Dnabc Complex Bound to Ssdna within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:F1001
b:37.9
occ:1.00
|
F2
|
A:08T1001
|
0.0
|
37.9
|
1.0
|
BE
|
A:08T1001
|
1.3
|
37.9
|
1.0
|
O3B
|
A:08T1001
|
2.2
|
37.9
|
1.0
|
F1
|
A:08T1001
|
2.2
|
37.9
|
1.0
|
F3
|
A:08T1001
|
2.2
|
37.9
|
1.0
|
MG
|
A:MG1002
|
2.3
|
10.6
|
1.0
|
O2B
|
A:08T1001
|
2.4
|
37.9
|
1.0
|
PB
|
A:08T1001
|
2.8
|
37.9
|
1.0
|
OE1
|
A:GLU262
|
3.1
|
22.0
|
1.0
|
OE2
|
A:GLU262
|
3.1
|
22.0
|
1.0
|
HD3
|
F:ARG442
|
3.4
|
21.7
|
1.0
|
CD
|
A:GLU262
|
3.5
|
22.0
|
1.0
|
HZ3
|
A:LYS237
|
3.6
|
37.9
|
1.0
|
HZ1
|
A:LYS237
|
3.7
|
37.9
|
1.0
|
O3A
|
A:08T1001
|
3.8
|
37.9
|
1.0
|
HH21
|
F:ARG442
|
3.9
|
21.7
|
1.0
|
OG1
|
A:THR238
|
3.9
|
25.0
|
1.0
|
O1B
|
A:08T1001
|
4.0
|
37.9
|
1.0
|
NZ
|
A:LYS237
|
4.0
|
37.9
|
1.0
|
HE2
|
A:LYS237
|
4.1
|
37.9
|
1.0
|
CD
|
F:ARG442
|
4.4
|
21.7
|
1.0
|
NH2
|
F:ARG442
|
4.4
|
21.7
|
1.0
|
OE1
|
A:GLN384
|
4.5
|
28.5
|
1.0
|
HA
|
A:PRO233
|
4.5
|
20.8
|
1.0
|
CE
|
A:LYS237
|
4.6
|
37.9
|
1.0
|
HD2
|
F:ARG442
|
4.6
|
21.7
|
1.0
|
HZ1
|
F:LYS440
|
4.7
|
16.7
|
1.0
|
HH22
|
F:ARG442
|
4.7
|
21.7
|
1.0
|
O
|
A:PRO233
|
4.7
|
20.8
|
1.0
|
O
|
F:GLN410
|
4.8
|
17.7
|
1.0
|
HZ2
|
A:LYS237
|
4.8
|
37.9
|
1.0
|
OD1
|
A:ASP343
|
4.9
|
20.5
|
1.0
|
HB2
|
A:TYR344
|
4.9
|
20.7
|
1.0
|
HG3
|
A:LYS237
|
4.9
|
37.9
|
1.0
|
HE3
|
A:MET263
|
4.9
|
19.6
|
1.0
|
HG2
|
A:LYS237
|
4.9
|
37.9
|
1.0
|
CG
|
A:GLU262
|
4.9
|
22.0
|
1.0
|
CZ
|
F:ARG442
|
5.0
|
21.7
|
1.0
|
NE
|
F:ARG442
|
5.0
|
21.7
|
1.0
|
|
Fluorine binding site 3 out
of 15 in 6qem
Go back to
Fluorine Binding Sites List in 6qem
Fluorine binding site 3 out
of 15 in the E. Coli Dnabc Complex Bound to Ssdna
Mono view
Stereo pair view
|
A full contact list of Fluorine with other atoms in the F binding
site number 3 of E. Coli Dnabc Complex Bound to Ssdna within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:F1001
b:37.9
occ:1.00
|
F3
|
A:08T1001
|
0.0
|
37.9
|
1.0
|
BE
|
A:08T1001
|
1.4
|
37.9
|
1.0
|
O3B
|
A:08T1001
|
2.2
|
37.9
|
1.0
|
F2
|
A:08T1001
|
2.2
|
37.9
|
1.0
|
F1
|
A:08T1001
|
2.2
|
37.9
|
1.0
|
HZ1
|
A:LYS237
|
2.6
|
37.9
|
1.0
|
HA
|
A:PRO233
|
3.0
|
20.8
|
1.0
|
OE1
|
A:GLN384
|
3.1
|
28.5
|
1.0
|
HZ3
|
A:LYS237
|
3.2
|
37.9
|
1.0
|
HE22
|
A:GLN384
|
3.2
|
28.5
|
1.0
|
NZ
|
A:LYS237
|
3.3
|
37.9
|
1.0
|
HB3
|
A:PRO233
|
3.4
|
20.8
|
1.0
|
PB
|
A:08T1001
|
3.6
|
37.9
|
1.0
|
HA
|
F:GLN410
|
3.6
|
17.7
|
1.0
|
NE2
|
A:GLN384
|
3.7
|
28.5
|
1.0
|
CD
|
A:GLN384
|
3.7
|
28.5
|
1.0
|
HZ2
|
A:LYS237
|
3.8
|
37.9
|
1.0
|
CA
|
A:PRO233
|
3.8
|
20.8
|
1.0
|
OE2
|
A:GLU262
|
3.9
|
22.0
|
1.0
|
O2B
|
A:08T1001
|
4.0
|
37.9
|
1.0
|
CB
|
A:PRO233
|
4.0
|
20.8
|
1.0
|
O
|
F:GLN410
|
4.1
|
17.7
|
1.0
|
HG3
|
A:PRO233
|
4.1
|
20.8
|
1.0
|
HB3
|
F:GLN410
|
4.1
|
17.7
|
1.0
|
HE2
|
A:LYS237
|
4.1
|
37.9
|
1.0
|
HG2
|
F:GLN410
|
4.3
|
17.7
|
1.0
|
CE
|
A:LYS237
|
4.3
|
37.9
|
1.0
|
MG
|
A:MG1002
|
4.3
|
10.6
|
1.0
|
O
|
A:PRO233
|
4.3
|
20.8
|
1.0
|
OE1
|
A:GLU262
|
4.4
|
22.0
|
1.0
|
O1B
|
A:08T1001
|
4.4
|
37.9
|
1.0
|
CA
|
F:GLN410
|
4.4
|
17.7
|
1.0
|
HE21
|
A:GLN384
|
4.4
|
28.5
|
1.0
|
HZ1
|
F:LYS440
|
4.5
|
16.7
|
1.0
|
CD
|
A:GLU262
|
4.5
|
22.0
|
1.0
|
HH21
|
F:ARG442
|
4.6
|
21.7
|
1.0
|
C
|
A:PRO233
|
4.6
|
20.8
|
1.0
|
CG
|
A:PRO233
|
4.6
|
20.8
|
1.0
|
HE3
|
A:LYS237
|
4.6
|
37.9
|
1.0
|
CB
|
F:GLN410
|
4.6
|
17.7
|
1.0
|
HE3
|
F:LYS440
|
4.7
|
16.7
|
1.0
|
C
|
F:GLN410
|
4.7
|
17.7
|
1.0
|
O3A
|
A:08T1001
|
4.7
|
37.9
|
1.0
|
HB2
|
A:PRO233
|
4.9
|
20.8
|
1.0
|
N
|
A:PRO233
|
4.9
|
20.8
|
1.0
|
HD3
|
F:ARG442
|
4.9
|
21.7
|
1.0
|
CG
|
F:GLN410
|
4.9
|
17.7
|
1.0
|
|
Fluorine binding site 4 out
of 15 in 6qem
Go back to
Fluorine Binding Sites List in 6qem
Fluorine binding site 4 out
of 15 in the E. Coli Dnabc Complex Bound to Ssdna
Mono view
Stereo pair view
|
A full contact list of Fluorine with other atoms in the F binding
site number 4 of E. Coli Dnabc Complex Bound to Ssdna within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:F1001
b:37.9
occ:1.00
|
F1
|
B:08T1001
|
0.0
|
37.9
|
1.0
|
BE
|
B:08T1001
|
1.4
|
37.9
|
1.0
|
HH21
|
A:ARG442
|
1.9
|
37.9
|
1.0
|
HH22
|
A:ARG442
|
2.2
|
37.9
|
1.0
|
O3B
|
B:08T1001
|
2.2
|
37.9
|
1.0
|
F2
|
B:08T1001
|
2.2
|
37.9
|
1.0
|
F3
|
B:08T1001
|
2.2
|
37.9
|
1.0
|
NH2
|
A:ARG442
|
2.3
|
37.9
|
1.0
|
HZ1
|
A:LYS440
|
3.0
|
37.9
|
1.0
|
O
|
B:PRO233
|
3.2
|
37.9
|
1.0
|
HB3
|
B:PRO233
|
3.4
|
37.9
|
1.0
|
PB
|
B:08T1001
|
3.4
|
37.9
|
1.0
|
OE2
|
B:GLU262
|
3.5
|
23.3
|
1.0
|
CZ
|
A:ARG442
|
3.5
|
37.9
|
1.0
|
HD3
|
A:ARG442
|
3.6
|
37.9
|
1.0
|
O3A
|
B:08T1001
|
3.7
|
37.9
|
1.0
|
HE3
|
A:LYS440
|
3.7
|
37.9
|
1.0
|
HA
|
B:PRO233
|
3.8
|
37.9
|
1.0
|
NZ
|
A:LYS440
|
3.8
|
37.9
|
1.0
|
HE2
|
A:LYS440
|
3.8
|
37.9
|
1.0
|
O2B
|
B:08T1001
|
3.8
|
37.9
|
1.0
|
HG3
|
A:ARG442
|
3.8
|
37.9
|
1.0
|
O
|
A:GLN410
|
3.9
|
21.3
|
1.0
|
HA
|
A:GLN410
|
4.0
|
21.3
|
1.0
|
CE
|
A:LYS440
|
4.0
|
37.9
|
1.0
|
HE22
|
B:GLN384
|
4.0
|
19.4
|
1.0
|
HG2
|
A:ARG442
|
4.0
|
37.9
|
1.0
|
C
|
B:PRO233
|
4.1
|
37.9
|
1.0
|
CB
|
B:PRO233
|
4.1
|
37.9
|
1.0
|
HZ1
|
B:LYS237
|
4.2
|
37.9
|
1.0
|
MG
|
B:MG1002
|
4.2
|
5.8
|
1.0
|
CA
|
B:PRO233
|
4.2
|
37.9
|
1.0
|
CD
|
A:ARG442
|
4.2
|
37.9
|
1.0
|
CG
|
A:ARG442
|
4.2
|
37.9
|
1.0
|
HZ3
|
A:LYS440
|
4.3
|
37.9
|
1.0
|
NE
|
A:ARG442
|
4.3
|
37.9
|
1.0
|
HZ2
|
A:LYS440
|
4.3
|
37.9
|
1.0
|
CD
|
B:GLU262
|
4.3
|
23.3
|
1.0
|
HH12
|
A:ARG442
|
4.4
|
37.9
|
1.0
|
NH1
|
A:ARG442
|
4.4
|
37.9
|
1.0
|
OE1
|
B:GLU262
|
4.4
|
23.3
|
1.0
|
O1B
|
B:08T1001
|
4.6
|
37.9
|
1.0
|
HZ3
|
B:LYS237
|
4.6
|
37.9
|
1.0
|
HB2
|
B:PRO233
|
4.6
|
37.9
|
1.0
|
C
|
A:GLN410
|
4.8
|
21.3
|
1.0
|
NE2
|
B:GLN384
|
4.8
|
19.4
|
1.0
|
CA
|
A:GLN410
|
4.8
|
21.3
|
1.0
|
NZ
|
B:LYS237
|
4.8
|
37.9
|
1.0
|
HE21
|
B:GLN384
|
5.0
|
19.4
|
1.0
|
|
Fluorine binding site 5 out
of 15 in 6qem
Go back to
Fluorine Binding Sites List in 6qem
Fluorine binding site 5 out
of 15 in the E. Coli Dnabc Complex Bound to Ssdna
Mono view
Stereo pair view
|
A full contact list of Fluorine with other atoms in the F binding
site number 5 of E. Coli Dnabc Complex Bound to Ssdna within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:F1001
b:37.9
occ:1.00
|
F2
|
B:08T1001
|
0.0
|
37.9
|
1.0
|
BE
|
B:08T1001
|
1.4
|
37.9
|
1.0
|
MG
|
B:MG1002
|
2.2
|
5.8
|
1.0
|
O3B
|
B:08T1001
|
2.2
|
37.9
|
1.0
|
F1
|
B:08T1001
|
2.2
|
37.9
|
1.0
|
F3
|
B:08T1001
|
2.2
|
37.9
|
1.0
|
O2B
|
B:08T1001
|
2.4
|
37.9
|
1.0
|
PB
|
B:08T1001
|
2.8
|
37.9
|
1.0
|
OE1
|
B:GLU262
|
2.9
|
23.3
|
1.0
|
OE2
|
B:GLU262
|
3.2
|
23.3
|
1.0
|
HH21
|
A:ARG442
|
3.3
|
37.9
|
1.0
|
CD
|
B:GLU262
|
3.4
|
23.3
|
1.0
|
HZ1
|
B:LYS237
|
3.5
|
37.9
|
1.0
|
NH2
|
A:ARG442
|
3.6
|
37.9
|
1.0
|
HH22
|
A:ARG442
|
3.6
|
37.9
|
1.0
|
HE22
|
B:GLN384
|
3.7
|
19.4
|
1.0
|
HZ3
|
B:LYS237
|
3.7
|
37.9
|
1.0
|
OG1
|
B:THR238
|
3.7
|
26.8
|
1.0
|
O3A
|
B:08T1001
|
3.8
|
37.9
|
1.0
|
HE2
|
B:LYS237
|
3.8
|
37.9
|
1.0
|
HD3
|
A:ARG442
|
3.8
|
37.9
|
1.0
|
NZ
|
B:LYS237
|
4.0
|
37.9
|
1.0
|
O1B
|
B:08T1001
|
4.0
|
37.9
|
1.0
|
HE21
|
B:GLN384
|
4.3
|
19.4
|
1.0
|
NE2
|
B:GLN384
|
4.3
|
19.4
|
1.0
|
CE
|
B:LYS237
|
4.4
|
37.9
|
1.0
|
CZ
|
A:ARG442
|
4.4
|
37.9
|
1.0
|
HA
|
B:PRO233
|
4.5
|
37.9
|
1.0
|
O
|
B:PRO233
|
4.6
|
37.9
|
1.0
|
CD
|
A:ARG442
|
4.7
|
37.9
|
1.0
|
HZ2
|
B:LYS237
|
4.8
|
37.9
|
1.0
|
HB2
|
B:TYR344
|
4.9
|
21.7
|
1.0
|
HG3
|
B:LYS237
|
4.9
|
37.9
|
1.0
|
NE
|
A:ARG442
|
4.9
|
37.9
|
1.0
|
CG
|
B:GLU262
|
4.9
|
23.3
|
1.0
|
HE3
|
B:LYS237
|
4.9
|
37.9
|
1.0
|
HB
|
B:THR238
|
4.9
|
26.8
|
1.0
|
CB
|
B:THR238
|
4.9
|
26.8
|
1.0
|
HG2
|
A:ARG442
|
5.0
|
37.9
|
1.0
|
HG2
|
B:LYS237
|
5.0
|
37.9
|
1.0
|
O
|
A:GLN410
|
5.0
|
21.3
|
1.0
|
HB3
|
B:PRO233
|
5.0
|
37.9
|
1.0
|
|
Fluorine binding site 6 out
of 15 in 6qem
Go back to
Fluorine Binding Sites List in 6qem
Fluorine binding site 6 out
of 15 in the E. Coli Dnabc Complex Bound to Ssdna
Mono view
Stereo pair view
|
A full contact list of Fluorine with other atoms in the F binding
site number 6 of E. Coli Dnabc Complex Bound to Ssdna within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:F1001
b:37.9
occ:1.00
|
F3
|
B:08T1001
|
0.0
|
37.9
|
1.0
|
BE
|
B:08T1001
|
1.4
|
37.9
|
1.0
|
HE22
|
B:GLN384
|
1.8
|
19.4
|
1.0
|
O3B
|
B:08T1001
|
2.2
|
37.9
|
1.0
|
F1
|
B:08T1001
|
2.2
|
37.9
|
1.0
|
F2
|
B:08T1001
|
2.2
|
37.9
|
1.0
|
HZ1
|
B:LYS237
|
2.4
|
37.9
|
1.0
|
NE2
|
B:GLN384
|
2.6
|
19.4
|
1.0
|
HE21
|
B:GLN384
|
2.9
|
19.4
|
1.0
|
HA
|
B:PRO233
|
2.9
|
37.9
|
1.0
|
NZ
|
B:LYS237
|
3.2
|
37.9
|
1.0
|
HB3
|
B:PRO233
|
3.3
|
37.9
|
1.0
|
HZ3
|
B:LYS237
|
3.4
|
37.9
|
1.0
|
PB
|
B:08T1001
|
3.6
|
37.9
|
1.0
|
CD
|
B:GLN384
|
3.7
|
19.4
|
1.0
|
CA
|
B:PRO233
|
3.7
|
37.9
|
1.0
|
HZ2
|
B:LYS237
|
3.8
|
37.9
|
1.0
|
OE2
|
B:GLU262
|
3.8
|
23.3
|
1.0
|
HA
|
A:GLN410
|
3.8
|
21.3
|
1.0
|
HE2
|
B:LYS237
|
3.8
|
37.9
|
1.0
|
HH22
|
A:ARG442
|
3.8
|
37.9
|
1.0
|
CB
|
B:PRO233
|
3.9
|
37.9
|
1.0
|
HG3
|
B:PRO233
|
3.9
|
37.9
|
1.0
|
O2B
|
B:08T1001
|
4.0
|
37.9
|
1.0
|
CE
|
B:LYS237
|
4.0
|
37.9
|
1.0
|
HH21
|
A:ARG442
|
4.0
|
37.9
|
1.0
|
O
|
B:PRO233
|
4.0
|
37.9
|
1.0
|
OE1
|
B:GLN384
|
4.0
|
19.4
|
1.0
|
HE3
|
B:LYS237
|
4.2
|
37.9
|
1.0
|
NH2
|
A:ARG442
|
4.2
|
37.9
|
1.0
|
O
|
A:GLN410
|
4.3
|
21.3
|
1.0
|
MG
|
B:MG1002
|
4.3
|
5.8
|
1.0
|
HG2
|
A:GLN410
|
4.3
|
21.3
|
1.0
|
C
|
B:PRO233
|
4.3
|
37.9
|
1.0
|
HB3
|
A:GLN410
|
4.4
|
21.3
|
1.0
|
O1B
|
B:08T1001
|
4.4
|
37.9
|
1.0
|
OE1
|
B:GLU262
|
4.4
|
23.3
|
1.0
|
CG
|
B:PRO233
|
4.5
|
37.9
|
1.0
|
CD
|
B:GLU262
|
4.5
|
23.3
|
1.0
|
CA
|
A:GLN410
|
4.6
|
21.3
|
1.0
|
O3A
|
B:08T1001
|
4.7
|
37.9
|
1.0
|
HB2
|
B:PRO233
|
4.8
|
37.9
|
1.0
|
HE3
|
A:LYS440
|
4.8
|
37.9
|
1.0
|
N
|
B:PRO233
|
4.8
|
37.9
|
1.0
|
HZ1
|
A:LYS440
|
4.8
|
37.9
|
1.0
|
CB
|
A:GLN410
|
4.9
|
21.3
|
1.0
|
CG
|
B:GLN384
|
4.9
|
19.4
|
1.0
|
C
|
A:GLN410
|
4.9
|
21.3
|
1.0
|
|
Fluorine binding site 7 out
of 15 in 6qem
Go back to
Fluorine Binding Sites List in 6qem
Fluorine binding site 7 out
of 15 in the E. Coli Dnabc Complex Bound to Ssdna
Mono view
Stereo pair view
|
A full contact list of Fluorine with other atoms in the F binding
site number 7 of E. Coli Dnabc Complex Bound to Ssdna within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
C:F1001
b:37.9
occ:1.00
|
F1
|
C:08T1001
|
0.0
|
37.9
|
1.0
|
BE
|
C:08T1001
|
1.4
|
37.9
|
1.0
|
HZ1
|
B:LYS440
|
2.0
|
37.9
|
1.0
|
HH21
|
B:ARG442
|
2.0
|
37.9
|
1.0
|
O3B
|
C:08T1001
|
2.2
|
37.9
|
1.0
|
F2
|
C:08T1001
|
2.2
|
37.9
|
1.0
|
F3
|
C:08T1001
|
2.2
|
37.9
|
1.0
|
NH2
|
B:ARG442
|
2.7
|
37.9
|
1.0
|
HH22
|
B:ARG442
|
2.8
|
37.9
|
1.0
|
NZ
|
B:LYS440
|
2.8
|
37.9
|
1.0
|
HZ3
|
B:LYS440
|
3.0
|
37.9
|
1.0
|
HZ2
|
B:LYS440
|
3.2
|
37.9
|
1.0
|
O
|
C:PRO233
|
3.2
|
37.9
|
1.0
|
PB
|
C:08T1001
|
3.4
|
37.9
|
1.0
|
HD3
|
B:ARG442
|
3.4
|
37.9
|
1.0
|
OE2
|
C:GLU262
|
3.5
|
26.2
|
1.0
|
HB3
|
C:PRO233
|
3.6
|
37.9
|
1.0
|
HG3
|
B:ARG442
|
3.6
|
37.9
|
1.0
|
O3A
|
C:08T1001
|
3.7
|
37.9
|
1.0
|
HA
|
C:PRO233
|
3.8
|
37.9
|
1.0
|
HE2
|
B:LYS440
|
3.9
|
37.9
|
1.0
|
O2B
|
C:08T1001
|
3.9
|
37.9
|
1.0
|
O
|
B:GLN410
|
3.9
|
27.4
|
1.0
|
HG2
|
B:ARG442
|
3.9
|
37.9
|
1.0
|
CE
|
B:LYS440
|
3.9
|
37.9
|
1.0
|
CZ
|
B:ARG442
|
3.9
|
37.9
|
1.0
|
HA
|
B:GLN410
|
4.0
|
27.4
|
1.0
|
CD
|
B:ARG442
|
4.1
|
37.9
|
1.0
|
CG
|
B:ARG442
|
4.1
|
37.9
|
1.0
|
MG
|
C:MG1002
|
4.1
|
37.9
|
1.0
|
C
|
C:PRO233
|
4.2
|
37.9
|
1.0
|
HE3
|
B:LYS440
|
4.2
|
37.9
|
1.0
|
CA
|
C:PRO233
|
4.3
|
37.9
|
1.0
|
CB
|
C:PRO233
|
4.3
|
37.9
|
1.0
|
NE
|
B:ARG442
|
4.4
|
37.9
|
1.0
|
HZ1
|
C:LYS237
|
4.5
|
37.9
|
1.0
|
CD
|
C:GLU262
|
4.5
|
26.2
|
1.0
|
HZ3
|
C:LYS237
|
4.5
|
37.9
|
1.0
|
O1B
|
C:08T1001
|
4.6
|
37.9
|
1.0
|
C
|
B:GLN410
|
4.8
|
27.4
|
1.0
|
OE1
|
C:GLU262
|
4.8
|
26.2
|
1.0
|
HB2
|
C:PRO233
|
4.8
|
37.9
|
1.0
|
CA
|
B:GLN410
|
4.8
|
27.4
|
1.0
|
HD2
|
B:ARG442
|
4.9
|
37.9
|
1.0
|
NZ
|
C:LYS237
|
4.9
|
37.9
|
1.0
|
NH1
|
B:ARG442
|
5.0
|
37.9
|
1.0
|
O
|
B:ALA412
|
5.0
|
28.2
|
1.0
|
HH12
|
B:ARG442
|
5.0
|
37.9
|
1.0
|
|
Fluorine binding site 8 out
of 15 in 6qem
Go back to
Fluorine Binding Sites List in 6qem
Fluorine binding site 8 out
of 15 in the E. Coli Dnabc Complex Bound to Ssdna
Mono view
Stereo pair view
|
A full contact list of Fluorine with other atoms in the F binding
site number 8 of E. Coli Dnabc Complex Bound to Ssdna within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
C:F1001
b:37.9
occ:1.00
|
F2
|
C:08T1001
|
0.0
|
37.9
|
1.0
|
BE
|
C:08T1001
|
1.4
|
37.9
|
1.0
|
O3B
|
C:08T1001
|
2.2
|
37.9
|
1.0
|
F1
|
C:08T1001
|
2.2
|
37.9
|
1.0
|
F3
|
C:08T1001
|
2.2
|
37.9
|
1.0
|
MG
|
C:MG1002
|
2.2
|
37.9
|
1.0
|
O2B
|
C:08T1001
|
2.5
|
37.9
|
1.0
|
PB
|
C:08T1001
|
2.8
|
37.9
|
1.0
|
OE2
|
C:GLU262
|
2.9
|
26.2
|
1.0
|
HH21
|
B:ARG442
|
2.9
|
37.9
|
1.0
|
OE1
|
C:GLU262
|
3.1
|
26.2
|
1.0
|
CD
|
C:GLU262
|
3.4
|
26.2
|
1.0
|
HD3
|
B:ARG442
|
3.5
|
37.9
|
1.0
|
HZ1
|
C:LYS237
|
3.6
|
37.9
|
1.0
|
NH2
|
B:ARG442
|
3.6
|
37.9
|
1.0
|
HZ3
|
C:LYS237
|
3.6
|
37.9
|
1.0
|
HH22
|
B:ARG442
|
3.8
|
37.9
|
1.0
|
O3A
|
C:08T1001
|
3.8
|
37.9
|
1.0
|
OG1
|
C:THR238
|
4.0
|
26.2
|
1.0
|
NZ
|
C:LYS237
|
4.0
|
37.9
|
1.0
|
O1B
|
C:08T1001
|
4.0
|
37.9
|
1.0
|
HE2
|
C:LYS237
|
4.2
|
37.9
|
1.0
|
HZ1
|
B:LYS440
|
4.2
|
37.9
|
1.0
|
CD
|
B:ARG442
|
4.4
|
37.9
|
1.0
|
O
|
C:PRO233
|
4.6
|
37.9
|
1.0
|
HA
|
C:PRO233
|
4.6
|
37.9
|
1.0
|
CZ
|
B:ARG442
|
4.6
|
37.9
|
1.0
|
CE
|
C:LYS237
|
4.6
|
37.9
|
1.0
|
HG2
|
B:ARG442
|
4.7
|
37.9
|
1.0
|
HZ2
|
C:LYS237
|
4.8
|
37.9
|
1.0
|
OE1
|
C:GLN384
|
4.8
|
37.9
|
1.0
|
CG
|
C:GLU262
|
4.8
|
26.2
|
1.0
|
HG3
|
B:ARG442
|
4.9
|
37.9
|
1.0
|
HG3
|
C:LYS237
|
4.9
|
37.9
|
1.0
|
CG
|
B:ARG442
|
4.9
|
37.9
|
1.0
|
HB2
|
C:TYR344
|
4.9
|
22.1
|
1.0
|
HG2
|
C:GLU262
|
5.0
|
26.2
|
1.0
|
NE
|
B:ARG442
|
5.0
|
37.9
|
1.0
|
HD2
|
B:ARG442
|
5.0
|
37.9
|
1.0
|
O
|
B:GLN410
|
5.0
|
27.4
|
1.0
|
|
Fluorine binding site 9 out
of 15 in 6qem
Go back to
Fluorine Binding Sites List in 6qem
Fluorine binding site 9 out
of 15 in the E. Coli Dnabc Complex Bound to Ssdna
Mono view
Stereo pair view
|
A full contact list of Fluorine with other atoms in the F binding
site number 9 of E. Coli Dnabc Complex Bound to Ssdna within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
C:F1001
b:37.9
occ:1.00
|
F3
|
C:08T1001
|
0.0
|
37.9
|
1.0
|
BE
|
C:08T1001
|
1.4
|
37.9
|
1.0
|
O3B
|
C:08T1001
|
2.2
|
37.9
|
1.0
|
F1
|
C:08T1001
|
2.2
|
37.9
|
1.0
|
F2
|
C:08T1001
|
2.2
|
37.9
|
1.0
|
HZ1
|
C:LYS237
|
2.6
|
37.9
|
1.0
|
HA
|
C:PRO233
|
3.0
|
37.9
|
1.0
|
HZ3
|
C:LYS237
|
3.2
|
37.9
|
1.0
|
NZ
|
C:LYS237
|
3.3
|
37.9
|
1.0
|
OE1
|
C:GLN384
|
3.3
|
37.9
|
1.0
|
HE22
|
C:GLN384
|
3.4
|
37.9
|
1.0
|
HB3
|
C:PRO233
|
3.6
|
37.9
|
1.0
|
PB
|
C:08T1001
|
3.6
|
37.9
|
1.0
|
OE2
|
C:GLU262
|
3.7
|
26.2
|
1.0
|
HZ2
|
C:LYS237
|
3.8
|
37.9
|
1.0
|
HZ1
|
B:LYS440
|
3.8
|
37.9
|
1.0
|
HA
|
B:GLN410
|
3.8
|
27.4
|
1.0
|
CA
|
C:PRO233
|
3.8
|
37.9
|
1.0
|
HH21
|
B:ARG442
|
3.8
|
37.9
|
1.0
|
NE2
|
C:GLN384
|
3.9
|
37.9
|
1.0
|
CD
|
C:GLN384
|
3.9
|
37.9
|
1.0
|
O
|
C:PRO233
|
4.0
|
37.9
|
1.0
|
O2B
|
C:08T1001
|
4.0
|
37.9
|
1.0
|
HG2
|
B:GLN410
|
4.1
|
27.4
|
1.0
|
HB3
|
B:GLN410
|
4.1
|
27.4
|
1.0
|
HH22
|
B:ARG442
|
4.2
|
37.9
|
1.0
|
CB
|
C:PRO233
|
4.2
|
37.9
|
1.0
|
HE2
|
C:LYS237
|
4.2
|
37.9
|
1.0
|
O
|
B:GLN410
|
4.3
|
27.4
|
1.0
|
HZ3
|
B:LYS440
|
4.3
|
37.9
|
1.0
|
CE
|
C:LYS237
|
4.3
|
37.9
|
1.0
|
HG3
|
C:PRO233
|
4.3
|
37.9
|
1.0
|
NH2
|
B:ARG442
|
4.3
|
37.9
|
1.0
|
MG
|
C:MG1002
|
4.3
|
37.9
|
1.0
|
C
|
C:PRO233
|
4.3
|
37.9
|
1.0
|
O1B
|
C:08T1001
|
4.4
|
37.9
|
1.0
|
OE1
|
C:GLU262
|
4.4
|
26.2
|
1.0
|
NZ
|
B:LYS440
|
4.5
|
37.9
|
1.0
|
CD
|
C:GLU262
|
4.5
|
26.2
|
1.0
|
CA
|
B:GLN410
|
4.6
|
27.4
|
1.0
|
HE3
|
C:LYS237
|
4.6
|
37.9
|
1.0
|
HE21
|
C:GLN384
|
4.6
|
37.9
|
1.0
|
CB
|
B:GLN410
|
4.7
|
27.4
|
1.0
|
O3A
|
C:08T1001
|
4.7
|
37.9
|
1.0
|
CG
|
C:PRO233
|
4.8
|
37.9
|
1.0
|
CG
|
B:GLN410
|
4.9
|
27.4
|
1.0
|
C
|
B:GLN410
|
4.9
|
27.4
|
1.0
|
N
|
C:PRO233
|
4.9
|
37.9
|
1.0
|
HZ2
|
B:LYS440
|
5.0
|
37.9
|
1.0
|
HB2
|
C:PRO233
|
5.0
|
37.9
|
1.0
|
|
Fluorine binding site 10 out
of 15 in 6qem
Go back to
Fluorine Binding Sites List in 6qem
Fluorine binding site 10 out
of 15 in the E. Coli Dnabc Complex Bound to Ssdna
Mono view
Stereo pair view
|
A full contact list of Fluorine with other atoms in the F binding
site number 10 of E. Coli Dnabc Complex Bound to Ssdna within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
D:F1001
b:37.9
occ:1.00
|
F1
|
D:08T1001
|
0.0
|
37.9
|
1.0
|
BE
|
D:08T1001
|
1.3
|
37.9
|
1.0
|
O3B
|
D:08T1001
|
2.2
|
37.9
|
1.0
|
F3
|
D:08T1001
|
2.2
|
37.9
|
1.0
|
F2
|
D:08T1001
|
2.2
|
37.9
|
1.0
|
HH21
|
C:ARG442
|
2.4
|
37.9
|
1.0
|
HH22
|
C:ARG442
|
2.8
|
37.9
|
1.0
|
NH2
|
C:ARG442
|
2.8
|
37.9
|
1.0
|
HZ1
|
C:LYS440
|
3.0
|
37.9
|
1.0
|
PB
|
D:08T1001
|
3.4
|
37.9
|
1.0
|
OE2
|
D:GLU262
|
3.5
|
21.3
|
1.0
|
HB3
|
D:PRO233
|
3.7
|
23.5
|
1.0
|
HD3
|
C:ARG442
|
3.7
|
37.9
|
1.0
|
HE2
|
C:LYS440
|
3.7
|
37.9
|
1.0
|
O
|
C:GLN410
|
3.8
|
21.4
|
1.0
|
NZ
|
C:LYS440
|
3.8
|
37.9
|
1.0
|
O3A
|
D:08T1001
|
3.8
|
37.9
|
1.0
|
HE3
|
C:LYS440
|
3.8
|
37.9
|
1.0
|
HA
|
C:GLN410
|
3.9
|
21.4
|
1.0
|
HE22
|
D:GLN384
|
3.9
|
22.0
|
1.0
|
O2B
|
D:08T1001
|
3.9
|
37.9
|
1.0
|
CZ
|
C:ARG442
|
4.0
|
37.9
|
1.0
|
CE
|
C:LYS440
|
4.0
|
37.9
|
1.0
|
HA
|
D:PRO233
|
4.1
|
23.5
|
1.0
|
HZ3
|
C:LYS440
|
4.2
|
37.9
|
1.0
|
O
|
D:PRO233
|
4.2
|
23.5
|
1.0
|
HG2
|
C:ARG442
|
4.3
|
37.9
|
1.0
|
HZ2
|
C:LYS440
|
4.3
|
37.9
|
1.0
|
CD
|
D:GLU262
|
4.3
|
21.3
|
1.0
|
MG
|
D:MG1002
|
4.4
|
9.0
|
1.0
|
C
|
D:PRO233
|
4.4
|
23.5
|
1.0
|
OE1
|
D:GLU262
|
4.4
|
21.3
|
1.0
|
HG3
|
C:ARG442
|
4.4
|
37.9
|
1.0
|
CA
|
D:PRO233
|
4.4
|
23.5
|
1.0
|
CD
|
C:ARG442
|
4.5
|
37.9
|
1.0
|
CB
|
D:PRO233
|
4.5
|
23.5
|
1.0
|
HZ1
|
D:LYS237
|
4.5
|
37.9
|
1.0
|
NE2
|
D:GLN384
|
4.5
|
22.0
|
1.0
|
O1B
|
D:08T1001
|
4.6
|
37.9
|
1.0
|
NE
|
C:ARG442
|
4.6
|
37.9
|
1.0
|
C
|
C:GLN410
|
4.6
|
21.4
|
1.0
|
CG
|
C:ARG442
|
4.6
|
37.9
|
1.0
|
CA
|
C:GLN410
|
4.7
|
21.4
|
1.0
|
HE21
|
D:GLN384
|
4.7
|
22.0
|
1.0
|
HB2
|
D:PRO233
|
4.9
|
23.5
|
1.0
|
NH1
|
C:ARG442
|
4.9
|
37.9
|
1.0
|
OG
|
D:SER234
|
4.9
|
26.0
|
1.0
|
O
|
C:ALA412
|
4.9
|
26.1
|
1.0
|
HA
|
D:SER234
|
5.0
|
26.0
|
1.0
|
|
Reference:
E.Arias-Palomo,
N.Puri,
V.L.O'shea Murray,
Q.Yan,
J.M.Berger.
Physical Basis For the Loading of A Bacterial Replicative Helicase Onto Dna. Mol.Cell V. 74 173 2019.
ISSN: ISSN 1097-2765
PubMed: 30797687
DOI: 10.1016/J.MOLCEL.2019.01.023
Page generated: Fri Aug 2 00:48:58 2024
|