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Fluorine in PDB 6qkw: Crystal Structure of the Fluoroacetate Dehalogenase RPA1163 - TYR219PHE - Fluoroacetate Soaked 2HR

Protein crystallography data

The structure of Crystal Structure of the Fluoroacetate Dehalogenase RPA1163 - TYR219PHE - Fluoroacetate Soaked 2HR, PDB code: 6qkw was solved by P.Mehrabi, T.H.Kim, R.S.Prosser, E.F.Pai, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 28.65 / 1.51
Space group P 1 21 1
Cell size a, b, c (Å), α, β, γ (°) 41.750, 79.370, 85.010, 90.00, 103.01, 90.00
R / Rfree (%) 16.9 / 19.5

Other elements in 6qkw:

The structure of Crystal Structure of the Fluoroacetate Dehalogenase RPA1163 - TYR219PHE - Fluoroacetate Soaked 2HR also contains other interesting chemical elements:

Chlorine (Cl) 1 atom

Fluorine Binding Sites:

The binding sites of Fluorine atom in the Crystal Structure of the Fluoroacetate Dehalogenase RPA1163 - TYR219PHE - Fluoroacetate Soaked 2HR (pdb code 6qkw). This binding sites where shown within 5.0 Angstroms radius around Fluorine atom.
In total 2 binding sites of Fluorine where determined in the Crystal Structure of the Fluoroacetate Dehalogenase RPA1163 - TYR219PHE - Fluoroacetate Soaked 2HR, PDB code: 6qkw:
Jump to Fluorine binding site number: 1; 2;

Fluorine binding site 1 out of 2 in 6qkw

Go back to Fluorine Binding Sites List in 6qkw
Fluorine binding site 1 out of 2 in the Crystal Structure of the Fluoroacetate Dehalogenase RPA1163 - TYR219PHE - Fluoroacetate Soaked 2HR


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 1 of Crystal Structure of the Fluoroacetate Dehalogenase RPA1163 - TYR219PHE - Fluoroacetate Soaked 2HR within 5.0Å range:
probe atom residue distance (Å) B Occ
B:F401

b:9.8
occ:0.68
F B:FAH401 0.0 9.8 0.7
CH3 B:FAH401 1.4 11.6 0.7
C2 B:GOA403 1.8 10.5 0.3
C B:FAH401 2.4 9.6 0.7
C1 B:GOA403 2.6 9.4 0.3
OXT B:FAH401 2.7 10.2 0.7
O12 B:GOA403 2.7 10.3 0.3
O2 B:GOA403 3.0 10.1 0.3
NE1 B:TRP156 3.1 8.8 1.0
CZ3 B:TRP185 3.3 9.0 0.7
CH2 B:TRP185 3.3 9.7 0.7
O B:FAH401 3.6 7.6 0.7
CE1 B:HIS155 3.7 11.8 1.0
O11 B:GOA403 3.8 7.3 0.3
NE2 B:HIS155 3.9 15.9 1.0
OD1 B:ASP110 3.9 9.7 1.0
CE2 B:TRP156 4.0 9.3 1.0
CD1 B:TRP156 4.1 9.6 1.0
CZ2 B:TRP156 4.3 9.4 1.0
CE3 B:TRP185 4.6 9.4 0.7
CE2 B:TYR141 4.6 12.1 0.2
CZ2 B:TRP185 4.7 7.6 0.7
CG B:ASP110 4.9 8.3 1.0
NH1 B:ARG114 4.9 8.0 1.0
ND1 B:HIS155 5.0 14.4 1.0
NE2 B:HIS280 5.0 10.4 1.0
O B:FAH402 5.0 19.2 1.0

Fluorine binding site 2 out of 2 in 6qkw

Go back to Fluorine Binding Sites List in 6qkw
Fluorine binding site 2 out of 2 in the Crystal Structure of the Fluoroacetate Dehalogenase RPA1163 - TYR219PHE - Fluoroacetate Soaked 2HR


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 2 of Crystal Structure of the Fluoroacetate Dehalogenase RPA1163 - TYR219PHE - Fluoroacetate Soaked 2HR within 5.0Å range:
probe atom residue distance (Å) B Occ
B:F402

b:18.7
occ:1.00
F B:FAH402 0.0 18.7 1.0
CH3 B:FAH402 1.4 15.6 1.0
C B:FAH402 2.4 18.6 1.0
OXT B:FAH402 2.6 18.5 1.0
NZ B:LYS152 3.2 20.3 1.0
C B:GLY252 3.2 20.7 1.0
O B:GLY252 3.2 20.6 1.0
CA B:GLY252 3.4 19.7 1.0
CE3 B:TRP185 3.5 9.4 0.7
CD2 B:TRP185 3.5 11.6 0.7
O B:FAH402 3.5 19.2 1.0
CG B:TRP185 3.7 9.4 0.7
N B:ILE253 3.7 18.9 1.0
CE B:LYS152 3.9 16.5 1.0
OD2 B:ASP134 3.9 13.5 1.0
CB B:TRP185 3.9 13.1 0.7
CB B:HIS280 4.0 10.9 1.0
CZ3 B:TRP185 4.2 9.0 0.7
CE2 B:TRP185 4.2 11.1 0.7
ND1 B:HIS280 4.3 12.4 1.0
CG B:HIS280 4.4 10.6 1.0
CD1 B:TRP185 4.5 8.8 0.7
CA B:ILE253 4.5 18.3 1.0
CB B:TRP185 4.5 13.5 0.3
O B:SER251 4.7 18.8 1.0
CA B:HIS280 4.7 11.1 1.0
NE1 B:TRP185 4.7 10.7 0.7
N B:GLY252 4.7 21.4 1.0
CH2 B:TRP185 4.8 9.7 0.7
CZ2 B:TRP185 4.8 7.6 0.7
N B:HIS280 4.9 11.9 1.0
O B:TRP185 4.9 14.6 0.3

Reference:

P.Mehrabi, C.Di Pietrantonio, T.H.Kim, A.Sljoka, K.Taverner, C.Ing, N.Kruglyak, R.Pomes, E.F.Pai, R.S.Prosser. Substrate-Based Allosteric Regulation of A Homodimeric Enzyme. J.Am.Chem.Soc. V. 141 11540 2019.
ISSN: ESSN 1520-5126
PubMed: 31188575
DOI: 10.1021/JACS.9B03703
Page generated: Fri Aug 2 00:56:05 2024

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