Fluorine in PDB 6roi: Cryo-Em Structure of the Partially Activated DRS2P-CDC50P

Enzymatic activity of Cryo-Em Structure of the Partially Activated DRS2P-CDC50P

All present enzymatic activity of Cryo-Em Structure of the Partially Activated DRS2P-CDC50P:
7.6.2.1;

Other elements in 6roi:

The structure of Cryo-Em Structure of the Partially Activated DRS2P-CDC50P also contains other interesting chemical elements:

Magnesium (Mg) 1 atom

Fluorine Binding Sites:

The binding sites of Fluorine atom in the Cryo-Em Structure of the Partially Activated DRS2P-CDC50P (pdb code 6roi). This binding sites where shown within 5.0 Angstroms radius around Fluorine atom.
In total 3 binding sites of Fluorine where determined in the Cryo-Em Structure of the Partially Activated DRS2P-CDC50P, PDB code: 6roi:
Jump to Fluorine binding site number: 1; 2; 3;

Fluorine binding site 1 out of 3 in 6roi

Go back to Fluorine Binding Sites List in 6roi
Fluorine binding site 1 out of 3 in the Cryo-Em Structure of the Partially Activated DRS2P-CDC50P


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 1 of Cryo-Em Structure of the Partially Activated DRS2P-CDC50P within 5.0Å range:
probe atom residue distance (Å) B Occ
A:F560

b:71.9
occ:1.00
F1 A:BFD560 0.0 71.9 1.0
BE A:BFD560 1.5 71.9 1.0
ND2 A:ASN957 2.4 83.3 1.0
OD1 A:BFD560 2.4 71.9 1.0
F2 A:BFD560 2.4 71.9 1.0
O A:HOH1601 2.5 77.6 1.0
F3 A:BFD560 2.5 71.9 1.0
CG A:ASN957 3.1 83.3 1.0
CG A:BFD560 3.1 71.9 1.0
OD1 A:ASN957 3.1 83.3 1.0
NZ A:LYS934 3.3 80.1 1.0
MG A:MG1501 3.4 82.6 1.0
OD2 A:BFD560 3.5 71.9 1.0
O A:HOH1602 4.1 80.1 1.0
CB A:BFD560 4.2 71.9 1.0
CA A:GLY341 4.5 87.2 1.0
CB A:ASN957 4.5 83.3 1.0
N A:GLY341 4.5 87.2 1.0
OD1 A:ASP958 4.6 81.4 1.0
O A:ASP954 4.6 74.3 1.0
CG A:ASP958 4.6 81.4 1.0
C A:ASP340 4.7 91.1 1.0
CE A:LYS934 4.7 80.1 1.0
O A:THR562 4.7 71.2 1.0
O A:ASP340 4.7 91.1 1.0
N A:GLY836 4.8 84.6 1.0
OG1 A:THR562 4.8 71.2 1.0
CB A:ASP958 4.8 81.4 1.0
O A:LEU834 5.0 68.8 1.0

Fluorine binding site 2 out of 3 in 6roi

Go back to Fluorine Binding Sites List in 6roi
Fluorine binding site 2 out of 3 in the Cryo-Em Structure of the Partially Activated DRS2P-CDC50P


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 2 of Cryo-Em Structure of the Partially Activated DRS2P-CDC50P within 5.0Å range:
probe atom residue distance (Å) B Occ
A:F560

b:71.9
occ:1.00
F2 A:BFD560 0.0 71.9 1.0
BE A:BFD560 1.5 71.9 1.0
MG A:MG1501 1.7 82.6 1.0
O A:HOH1601 2.3 77.6 1.0
F1 A:BFD560 2.4 71.9 1.0
O A:THR562 2.4 71.2 1.0
O A:HOH1602 2.5 80.1 1.0
F3 A:BFD560 2.5 71.9 1.0
OD1 A:BFD560 2.5 71.9 1.0
OD2 A:BFD560 2.8 71.9 1.0
OG1 A:THR562 2.9 71.2 1.0
CG A:BFD560 3.0 71.9 1.0
C A:THR562 3.4 71.2 1.0
N A:THR562 3.7 71.2 1.0
CA A:THR562 3.8 71.2 1.0
CB A:THR562 3.9 71.2 1.0
OD1 A:ASP954 4.0 74.3 1.0
CA A:GLY341 4.0 87.2 1.0
ND2 A:ASN957 4.1 83.3 1.0
O A:ALA337 4.3 86.5 1.0
O A:ASP340 4.4 91.1 1.0
CB A:BFD560 4.5 71.9 1.0
N A:GLY563 4.6 67.3 1.0
N A:LYS561 4.6 72.0 1.0
OD1 A:ASN957 4.7 83.3 1.0
O A:ASP954 4.7 74.3 1.0
N A:GLY341 4.7 87.2 1.0
C A:LYS561 4.8 72.0 1.0
C A:ASP340 4.8 91.1 1.0
CG A:ASN957 4.8 83.3 1.0

Fluorine binding site 3 out of 3 in 6roi

Go back to Fluorine Binding Sites List in 6roi
Fluorine binding site 3 out of 3 in the Cryo-Em Structure of the Partially Activated DRS2P-CDC50P


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 3 of Cryo-Em Structure of the Partially Activated DRS2P-CDC50P within 5.0Å range:
probe atom residue distance (Å) B Occ
A:F560

b:71.9
occ:1.00
F3 A:BFD560 0.0 71.9 1.0
BE A:BFD560 1.5 71.9 1.0
OD1 A:BFD560 2.4 71.9 1.0
F2 A:BFD560 2.5 71.9 1.0
F1 A:BFD560 2.5 71.9 1.0
CA A:GLY341 3.2 87.2 1.0
N A:GLY836 3.2 84.6 1.0
OG1 A:THR562 3.3 71.2 1.0
OG1 A:THR835 3.5 77.3 1.0
CG A:BFD560 3.6 71.9 1.0
CA A:THR835 3.7 77.3 1.0
C A:THR835 3.9 77.3 1.0
N A:THR562 3.9 71.2 1.0
N A:GLY341 3.9 87.2 1.0
N A:LYS561 4.0 72.0 1.0
ND2 A:ASN957 4.0 83.3 1.0
MG A:MG1501 4.1 82.6 1.0
CB A:THR835 4.1 77.3 1.0
CA A:GLY836 4.2 84.6 1.0
OD2 A:BFD560 4.2 71.9 1.0
O A:HOH1601 4.2 77.6 1.0
O A:THR562 4.4 71.2 1.0
C A:GLY341 4.4 87.2 1.0
CB A:THR562 4.5 71.2 1.0
NZ A:LYS934 4.6 80.1 1.0
O A:GLY341 4.6 87.2 1.0
O A:LEU834 4.6 68.8 1.0
C A:ASP340 4.7 91.1 1.0
CA A:THR562 4.7 71.2 1.0
CB A:BFD560 4.7 71.9 1.0
CA A:LYS561 4.7 72.0 1.0
CB A:LYS561 4.8 72.0 1.0
C A:LYS561 4.8 72.0 1.0
O A:ASP340 4.8 91.1 1.0
O A:HOH1602 4.9 80.1 1.0
C A:BFD560 4.9 71.9 1.0
N A:ASP837 4.9 88.8 1.0
CA A:BFD560 4.9 71.9 1.0
O A:THR835 4.9 77.3 1.0
N A:THR835 5.0 77.3 1.0
C A:GLY836 5.0 84.6 1.0

Reference:

M.Timcenko, J.A.Lyons, D.Januliene, J.J.Ulstrup, T.Dieudonne, C.Montigny, M.R.Ash, J.L.Karlsen, T.Boesen, W.Kuhlbrandt, G.Lenoir, A.Moeller, P.Nissen. Structure and Autoregulation of A P4-Atpase Lipid Flippase. Nature V. 571 366 2019.
ISSN: ESSN 1476-4687
PubMed: 31243363
DOI: 10.1038/S41586-019-1344-7
Page generated: Sun Dec 13 13:10:05 2020

Last articles

Zn in 8WB0
Zn in 8WAX
Zn in 8WAU
Zn in 8WAZ
Zn in 8WAY
Zn in 8WAV
Zn in 8WAW
Zn in 8WAT
Zn in 8W7M
Zn in 8WD3
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy