Fluorine in PDB 6rse: Structure Based Optimization of JAK1-Atp Binding Pocket Inhibitors in the Aminopyrazole Class
Enzymatic activity of Structure Based Optimization of JAK1-Atp Binding Pocket Inhibitors in the Aminopyrazole Class
All present enzymatic activity of Structure Based Optimization of JAK1-Atp Binding Pocket Inhibitors in the Aminopyrazole Class:
2.7.10.2;
Protein crystallography data
The structure of Structure Based Optimization of JAK1-Atp Binding Pocket Inhibitors in the Aminopyrazole Class, PDB code: 6rse
was solved by
D.G.Brown,
P.J.Lupardus,
with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:
Resolution Low / High (Å)
|
39.04 /
1.80
|
Space group
|
P 21 21 21
|
Cell size a, b, c (Å), α, β, γ (°)
|
42.890,
88.960,
173.810,
90.00,
90.00,
90.00
|
R / Rfree (%)
|
26.3 /
30.4
|
Fluorine Binding Sites:
The binding sites of Fluorine atom in the Structure Based Optimization of JAK1-Atp Binding Pocket Inhibitors in the Aminopyrazole Class
(pdb code 6rse). This binding sites where shown within
5.0 Angstroms radius around Fluorine atom.
In total 4 binding sites of Fluorine where determined in the
Structure Based Optimization of JAK1-Atp Binding Pocket Inhibitors in the Aminopyrazole Class, PDB code: 6rse:
Jump to Fluorine binding site number:
1;
2;
3;
4;
Fluorine binding site 1 out
of 4 in 6rse
Go back to
Fluorine Binding Sites List in 6rse
Fluorine binding site 1 out
of 4 in the Structure Based Optimization of JAK1-Atp Binding Pocket Inhibitors in the Aminopyrazole Class
Mono view
Stereo pair view
|
A full contact list of Fluorine with other atoms in the F binding
site number 1 of Structure Based Optimization of JAK1-Atp Binding Pocket Inhibitors in the Aminopyrazole Class within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:F1201
b:22.4
occ:1.00
|
F1
|
A:KHH1201
|
0.0
|
22.4
|
1.0
|
C5
|
A:KHH1201
|
1.3
|
24.7
|
1.0
|
C6
|
A:KHH1201
|
2.3
|
22.8
|
1.0
|
C4
|
A:KHH1201
|
2.3
|
25.2
|
1.0
|
C7
|
A:KHH1201
|
2.7
|
23.0
|
1.0
|
C
|
A:GLY882
|
3.1
|
29.8
|
1.0
|
N
|
A:GLU883
|
3.1
|
31.8
|
1.0
|
O
|
A:GLY882
|
3.2
|
27.5
|
1.0
|
CA
|
A:GLU883
|
3.4
|
37.9
|
1.0
|
N
|
A:VAL889
|
3.4
|
23.4
|
1.0
|
C
|
A:GLU883
|
3.4
|
41.0
|
1.0
|
N1
|
A:KHH1201
|
3.5
|
20.2
|
1.0
|
C21
|
A:KHH1201
|
3.6
|
26.7
|
1.0
|
C3
|
A:KHH1201
|
3.6
|
27.0
|
1.0
|
CG2
|
A:VAL889
|
3.7
|
23.0
|
1.0
|
CA
|
A:LYS888
|
3.7
|
27.9
|
1.0
|
O
|
A:GLU883
|
3.7
|
39.5
|
1.0
|
CA
|
A:GLY882
|
3.8
|
27.1
|
1.0
|
N
|
A:GLY884
|
3.8
|
44.2
|
1.0
|
C
|
A:LYS888
|
3.8
|
24.7
|
1.0
|
CB
|
A:VAL889
|
4.0
|
22.9
|
1.0
|
C22
|
A:KHH1201
|
4.1
|
27.7
|
1.0
|
C20
|
A:KHH1201
|
4.2
|
19.9
|
1.0
|
CA
|
A:VAL889
|
4.3
|
23.3
|
1.0
|
O
|
A:GLY887
|
4.3
|
30.5
|
1.0
|
C8
|
A:KHH1201
|
4.4
|
20.0
|
1.0
|
N
|
A:GLY882
|
4.5
|
26.1
|
1.0
|
N
|
A:LYS888
|
4.5
|
27.2
|
1.0
|
F2
|
A:KHH1201
|
4.6
|
19.9
|
1.0
|
O
|
A:LYS888
|
4.6
|
22.0
|
1.0
|
CB
|
A:LYS888
|
4.7
|
31.6
|
1.0
|
O
|
A:HOH1427
|
4.8
|
47.3
|
1.0
|
C
|
A:GLY887
|
4.8
|
30.4
|
1.0
|
C2
|
A:KHH1201
|
4.8
|
30.4
|
1.0
|
CA
|
A:GLY884
|
4.8
|
46.5
|
1.0
|
CB
|
A:GLU883
|
4.9
|
40.5
|
1.0
|
C19
|
A:KHH1201
|
5.0
|
18.6
|
1.0
|
|
Fluorine binding site 2 out
of 4 in 6rse
Go back to
Fluorine Binding Sites List in 6rse
Fluorine binding site 2 out
of 4 in the Structure Based Optimization of JAK1-Atp Binding Pocket Inhibitors in the Aminopyrazole Class
Mono view
Stereo pair view
|
A full contact list of Fluorine with other atoms in the F binding
site number 2 of Structure Based Optimization of JAK1-Atp Binding Pocket Inhibitors in the Aminopyrazole Class within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:F1201
b:19.9
occ:1.00
|
F2
|
A:KHH1201
|
0.0
|
19.9
|
1.0
|
C19
|
A:KHH1201
|
1.4
|
18.6
|
1.0
|
C20
|
A:KHH1201
|
2.4
|
19.9
|
1.0
|
C10
|
A:KHH1201
|
2.4
|
18.7
|
1.0
|
N3
|
A:KHH1201
|
2.7
|
16.9
|
1.0
|
C9
|
A:KHH1201
|
2.8
|
19.1
|
1.0
|
N1
|
A:KHH1201
|
3.0
|
20.2
|
1.0
|
N6
|
A:KHH1201
|
3.1
|
17.0
|
1.0
|
CB
|
A:LEU881
|
3.4
|
23.0
|
1.0
|
CB
|
A:VAL889
|
3.4
|
22.9
|
1.0
|
C8
|
A:KHH1201
|
3.4
|
20.0
|
1.0
|
C
|
A:LEU881
|
3.5
|
25.2
|
1.0
|
N
|
A:GLY882
|
3.5
|
26.1
|
1.0
|
CG1
|
A:VAL889
|
3.5
|
23.6
|
1.0
|
O
|
A:LEU881
|
3.6
|
25.1
|
1.0
|
C13
|
A:KHH1201
|
3.6
|
16.6
|
1.0
|
C11
|
A:KHH1201
|
3.7
|
17.8
|
1.0
|
CA
|
A:GLY882
|
3.9
|
27.1
|
1.0
|
CG2
|
A:VAL889
|
4.0
|
23.0
|
1.0
|
CA
|
A:LEU881
|
4.0
|
24.8
|
1.0
|
C16
|
A:KHH1201
|
4.1
|
16.9
|
1.0
|
C7
|
A:KHH1201
|
4.2
|
23.0
|
1.0
|
C14
|
A:KHH1201
|
4.4
|
16.8
|
1.0
|
O
|
A:VAL889
|
4.4
|
23.9
|
1.0
|
O
|
A:HOH1347
|
4.6
|
21.4
|
1.0
|
CA
|
A:VAL889
|
4.6
|
23.3
|
1.0
|
F1
|
A:KHH1201
|
4.6
|
22.4
|
1.0
|
CG
|
A:LEU881
|
4.7
|
23.3
|
1.0
|
O2
|
A:KHH1201
|
4.7
|
17.9
|
1.0
|
CD1
|
A:LEU881
|
4.8
|
22.7
|
1.0
|
C
|
A:VAL889
|
4.8
|
23.8
|
1.0
|
C
|
A:GLY882
|
4.8
|
29.8
|
1.0
|
C12
|
A:KHH1201
|
4.9
|
17.3
|
1.0
|
N
|
A:LEU881
|
5.0
|
26.7
|
1.0
|
|
Fluorine binding site 3 out
of 4 in 6rse
Go back to
Fluorine Binding Sites List in 6rse
Fluorine binding site 3 out
of 4 in the Structure Based Optimization of JAK1-Atp Binding Pocket Inhibitors in the Aminopyrazole Class
Mono view
Stereo pair view
|
A full contact list of Fluorine with other atoms in the F binding
site number 3 of Structure Based Optimization of JAK1-Atp Binding Pocket Inhibitors in the Aminopyrazole Class within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:F1201
b:26.5
occ:1.00
|
F1
|
B:KHH1201
|
0.0
|
26.5
|
1.0
|
C5
|
B:KHH1201
|
1.4
|
23.9
|
1.0
|
C4
|
B:KHH1201
|
2.3
|
25.4
|
1.0
|
C6
|
B:KHH1201
|
2.4
|
23.9
|
1.0
|
C7
|
B:KHH1201
|
2.8
|
24.3
|
1.0
|
C
|
B:GLY882
|
3.1
|
35.8
|
1.0
|
O
|
B:GLY882
|
3.2
|
35.3
|
1.0
|
CA
|
B:GLU883
|
3.2
|
44.5
|
1.0
|
N
|
B:GLU883
|
3.2
|
38.1
|
1.0
|
N
|
B:VAL889
|
3.3
|
25.7
|
1.0
|
N1
|
B:KHH1201
|
3.4
|
21.1
|
1.0
|
C
|
B:GLU883
|
3.4
|
46.9
|
1.0
|
CA
|
B:LYS888
|
3.6
|
33.9
|
1.0
|
CG2
|
B:VAL889
|
3.6
|
20.6
|
1.0
|
C21
|
B:KHH1201
|
3.6
|
25.6
|
1.0
|
C3
|
B:KHH1201
|
3.6
|
25.3
|
1.0
|
C
|
B:LYS888
|
3.6
|
29.2
|
1.0
|
N
|
B:GLY884
|
3.7
|
51.0
|
1.0
|
CA
|
B:GLY882
|
3.7
|
30.6
|
1.0
|
O
|
B:GLU883
|
3.8
|
44.9
|
1.0
|
CB
|
B:VAL889
|
3.9
|
21.2
|
1.0
|
C20
|
B:KHH1201
|
4.0
|
21.8
|
1.0
|
C22
|
B:KHH1201
|
4.1
|
25.9
|
1.0
|
CA
|
B:VAL889
|
4.2
|
24.4
|
1.0
|
O
|
B:GLY887
|
4.2
|
35.9
|
1.0
|
N
|
B:LYS888
|
4.4
|
34.1
|
1.0
|
C8
|
B:KHH1201
|
4.4
|
23.2
|
1.0
|
N
|
B:GLY882
|
4.5
|
29.2
|
1.0
|
F2
|
B:KHH1201
|
4.5
|
22.4
|
1.0
|
O
|
B:LYS888
|
4.6
|
27.0
|
1.0
|
CB
|
B:GLU883
|
4.6
|
49.0
|
1.0
|
CB
|
B:LYS888
|
4.6
|
37.8
|
1.0
|
C
|
B:GLY887
|
4.7
|
38.3
|
1.0
|
CA
|
B:GLY884
|
4.8
|
55.4
|
1.0
|
C2
|
B:KHH1201
|
4.8
|
31.6
|
1.0
|
C19
|
B:KHH1201
|
4.8
|
20.4
|
1.0
|
|
Fluorine binding site 4 out
of 4 in 6rse
Go back to
Fluorine Binding Sites List in 6rse
Fluorine binding site 4 out
of 4 in the Structure Based Optimization of JAK1-Atp Binding Pocket Inhibitors in the Aminopyrazole Class
Mono view
Stereo pair view
|
A full contact list of Fluorine with other atoms in the F binding
site number 4 of Structure Based Optimization of JAK1-Atp Binding Pocket Inhibitors in the Aminopyrazole Class within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:F1201
b:22.4
occ:1.00
|
F2
|
B:KHH1201
|
0.0
|
22.4
|
1.0
|
C19
|
B:KHH1201
|
1.4
|
20.4
|
1.0
|
C20
|
B:KHH1201
|
2.4
|
21.8
|
1.0
|
C10
|
B:KHH1201
|
2.4
|
20.4
|
1.0
|
N3
|
B:KHH1201
|
2.8
|
18.7
|
1.0
|
C9
|
B:KHH1201
|
2.8
|
20.4
|
1.0
|
N1
|
B:KHH1201
|
3.0
|
21.1
|
1.0
|
N6
|
B:KHH1201
|
3.2
|
17.9
|
1.0
|
CB
|
B:LEU881
|
3.3
|
24.9
|
1.0
|
CB
|
B:VAL889
|
3.3
|
21.2
|
1.0
|
C8
|
B:KHH1201
|
3.5
|
23.2
|
1.0
|
C
|
B:LEU881
|
3.5
|
27.4
|
1.0
|
N
|
B:GLY882
|
3.5
|
29.2
|
1.0
|
CG1
|
B:VAL889
|
3.6
|
20.9
|
1.0
|
C13
|
B:KHH1201
|
3.6
|
17.3
|
1.0
|
O
|
B:LEU881
|
3.7
|
27.3
|
1.0
|
C11
|
B:KHH1201
|
3.9
|
19.5
|
1.0
|
CA
|
B:GLY882
|
3.9
|
30.6
|
1.0
|
CG2
|
B:VAL889
|
4.0
|
20.6
|
1.0
|
CA
|
B:LEU881
|
4.0
|
26.4
|
1.0
|
C16
|
B:KHH1201
|
4.1
|
18.5
|
1.0
|
C7
|
B:KHH1201
|
4.3
|
24.3
|
1.0
|
C14
|
B:KHH1201
|
4.4
|
17.8
|
1.0
|
O
|
B:VAL889
|
4.4
|
24.1
|
1.0
|
F1
|
B:KHH1201
|
4.5
|
26.5
|
1.0
|
CA
|
B:VAL889
|
4.5
|
24.4
|
1.0
|
O
|
B:HOH1415
|
4.6
|
22.5
|
1.0
|
CG
|
B:LEU881
|
4.7
|
26.1
|
1.0
|
C
|
B:VAL889
|
4.8
|
24.8
|
1.0
|
O2
|
B:KHH1201
|
4.8
|
19.1
|
1.0
|
CD1
|
B:LEU881
|
4.8
|
25.0
|
1.0
|
O
|
B:HOH1434
|
4.8
|
51.8
|
1.0
|
C
|
B:GLY882
|
4.8
|
35.8
|
1.0
|
|
Reference:
M.Zak,
P.Gibbons,
D.G.Brown.
Structure Based Optimization of JAK1-Atp Binding Pocket Inhibitors in the Aminopyrazole Class To Be Published.
Page generated: Fri Aug 2 01:22:14 2024
|