Fluorine in PDB 6uir: Hiv-1 M184V Reverse Transcriptase-Dna Complex with (-)-Ftc-Tp

All present enzymatic activity of Hiv-1 M184V Reverse Transcriptase-Dna Complex with (-)-Ftc-Tp:
2.7.7.49; 2.7.7.7; 3.1.26.13;

The structure of Hiv-1 M184V Reverse Transcriptase-Dna Complex with (-)-Ftc-Tp, PDB code: 6uir was solved by E.B.Lansdon, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	47.62 / 2.64
Space group	C 2 2 21
Cell size a, b, c (Å), α, β, γ (°)	165.867, 170.112, 103.372, 90.00, 90.00, 90.00
R / Rfree (%)	19.6 / 26.4

The structure of Hiv-1 M184V Reverse Transcriptase-Dna Complex with (-)-Ftc-Tp also contains other interesting chemical elements:

Magnesium

(Mg)

1 atom

The binding sites of Fluorine atom in the Hiv-1 M184V Reverse Transcriptase-Dna Complex with (-)-Ftc-Tp (pdb code 6uir). This binding sites where shown within 5.0 Angstroms radius around Fluorine atom.
In total only one binding site of Fluorine was determined in the Hiv-1 M184V Reverse Transcriptase-Dna Complex with (-)-Ftc-Tp, PDB code: 6uir:

Fluorine binding site 1 out of 1 in the Hiv-1 M184V Reverse Transcriptase-Dna Complex with (-)-Ftc-Tp


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 1 of Hiv-1 M184V Reverse Transcriptase-Dna Complex with (-)-Ftc-Tp within 5.0Å range: probe atom residue distance (Å) B Occ A:F601 b:21.3 occ:1.00 FAJ A:1RY601 0.0 21.3 1.0 CAU A:1RY601 1.3 19.8 1.0 CAK A:1RY601 2.4 18.5 1.0 CAT A:1RY601 2.4 20.1 1.0 NAA A:1RY601 2.7 17.7 1.0 C4 P:DOC822 3.5 13.4 1.0 NAY A:1RY601 3.5 18.6 1.0 C5 P:DOC822 3.5 14.5 1.0 NH1 A:ARG72 3.6 37.0 1.0 NAN A:1RY601 3.6 22.0 1.0 CZ A:ARG72 3.8 37.5 1.0 N3 P:DOC822 3.8 15.7 1.0 NH2 A:ARG72 3.8 33.7 1.0 C6 P:DOC822 3.9 14.7 1.0 N4 P:DOC822 3.9 12.8 1.0 CAV A:1RY601 4.0 20.8 1.0 C2 P:DOC822 4.1 15.6 1.0 N1 P:DOC822 4.2 15.0 1.0 NE A:ARG72 4.5 38.0 1.0 CAX A:1RY601 4.7 24.9 1.0 O2 P:DOC822 4.8 15.8 1.0 N1 T:DG706 5.0 16.5 1.0 OAP A:1RY601 5.0 25.1 1.0 C1' P:DOC822 5.0 15.1 1.0

M.Hung, E.J.Tokarsky, L.Lagpacan, L.Zhang, Z.Suo, E.B.Lansdon. Elucidating Molecular Interactions of L-Nucleotides with Hiv-1 Reverse Transcriptase and Mechanism of M184V-Caused Drug Resistance Commun Biol V. 2 2019.
ISSN: ESSN 2399-3642
DOI: 10.1038/S42003-019-0706-X