Fluorine in PDB 6ut0: Identification of the Clinical Development Candidate MRTX849, A Covalent KRASG12C Inhibitor For the Treatment of Cancer
Protein crystallography data
The structure of Identification of the Clinical Development Candidate MRTX849, A Covalent KRASG12C Inhibitor For the Treatment of Cancer, PDB code: 6ut0
was solved by
G.P.Vigers,
D.J.Smith,
with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:
Resolution Low / High (Å)
|
28.32 /
1.94
|
Space group
|
P 1 21 1
|
Cell size a, b, c (Å), α, β, γ (°)
|
74.918,
61.800,
76.050,
90.00,
111.37,
90.00
|
R / Rfree (%)
|
17.5 /
22.2
|
Other elements in 6ut0:
The structure of Identification of the Clinical Development Candidate MRTX849, A Covalent KRASG12C Inhibitor For the Treatment of Cancer also contains other interesting chemical elements:
Fluorine Binding Sites:
The binding sites of Fluorine atom in the Identification of the Clinical Development Candidate MRTX849, A Covalent KRASG12C Inhibitor For the Treatment of Cancer
(pdb code 6ut0). This binding sites where shown within
5.0 Angstroms radius around Fluorine atom.
In total 4 binding sites of Fluorine where determined in the
Identification of the Clinical Development Candidate MRTX849, A Covalent KRASG12C Inhibitor For the Treatment of Cancer, PDB code: 6ut0:
Jump to Fluorine binding site number:
1;
2;
3;
4;
Fluorine binding site 1 out
of 4 in 6ut0
Go back to
Fluorine Binding Sites List in 6ut0
Fluorine binding site 1 out
of 4 in the Identification of the Clinical Development Candidate MRTX849, A Covalent KRASG12C Inhibitor For the Treatment of Cancer
 Mono view
 Stereo pair view
|
A full contact list of Fluorine with other atoms in the F binding
site number 1 of Identification of the Clinical Development Candidate MRTX849, A Covalent KRASG12C Inhibitor For the Treatment of Cancer within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:F203
b:22.1
occ:1.00
|
F42
|
A:M1X203
|
0.0
|
22.1
|
1.0
|
C19
|
A:M1X203
|
1.4
|
21.3
|
1.0
|
C17
|
A:M1X203
|
2.4
|
19.8
|
1.0
|
C39
|
A:M1X203
|
2.4
|
20.1
|
1.0
|
C13
|
A:M1X203
|
2.7
|
19.2
|
1.0
|
N14
|
A:M1X203
|
2.7
|
18.5
|
1.0
|
SG
|
A:CYS12
|
3.2
|
23.8
|
1.0
|
O
|
A:GLY60
|
3.2
|
20.3
|
1.0
|
O18
|
A:M1X203
|
3.5
|
18.8
|
1.0
|
O
|
A:PRO34
|
3.6
|
18.4
|
1.0
|
HA
|
A:THR35
|
3.8
|
16.6
|
1.0
|
HG
|
A:CYS12
|
3.9
|
22.4
|
1.0
|
HB1
|
A:ALA59
|
4.1
|
16.7
|
1.0
|
C15
|
A:M1X203
|
4.2
|
18.8
|
1.0
|
C12
|
A:M1X203
|
4.2
|
19.2
|
1.0
|
HA
|
A:ALA59
|
4.2
|
17.0
|
1.0
|
HB2
|
A:PRO34
|
4.3
|
20.6
|
1.0
|
C
|
A:GLY60
|
4.5
|
21.6
|
1.0
|
C
|
A:PRO34
|
4.5
|
19.3
|
1.0
|
HG21
|
A:THR35
|
4.5
|
17.5
|
1.0
|
HA
|
A:GLN61
|
4.7
|
23.8
|
1.0
|
N
|
A:GLY60
|
4.7
|
21.5
|
1.0
|
H
|
A:GLY60
|
4.7
|
21.2
|
1.0
|
C
|
A:ALA59
|
4.7
|
19.0
|
1.0
|
CB
|
A:CYS12
|
4.8
|
20.2
|
1.0
|
CA
|
A:ALA59
|
4.8
|
17.1
|
1.0
|
CA
|
A:THR35
|
4.8
|
16.8
|
1.0
|
HB3
|
A:CYS12
|
4.9
|
20.8
|
1.0
|
CB
|
A:ALA59
|
4.9
|
16.5
|
1.0
|
HA
|
A:CYS12
|
4.9
|
19.0
|
1.0
|
C16
|
A:M1X203
|
5.0
|
17.5
|
1.0
|
O
|
A:HOH340
|
5.0
|
14.2
|
1.0
|
|
Fluorine binding site 2 out
of 4 in 6ut0
Go back to
Fluorine Binding Sites List in 6ut0
Fluorine binding site 2 out
of 4 in the Identification of the Clinical Development Candidate MRTX849, A Covalent KRASG12C Inhibitor For the Treatment of Cancer
 Mono view
 Stereo pair view
|
A full contact list of Fluorine with other atoms in the F binding
site number 2 of Identification of the Clinical Development Candidate MRTX849, A Covalent KRASG12C Inhibitor For the Treatment of Cancer within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:F203
b:20.6
occ:1.00
|
F42
|
B:M1X203
|
0.0
|
20.6
|
1.0
|
C19
|
B:M1X203
|
1.3
|
19.3
|
1.0
|
C39
|
B:M1X203
|
2.4
|
19.5
|
1.0
|
C17
|
B:M1X203
|
2.4
|
17.0
|
1.0
|
C13
|
B:M1X203
|
2.6
|
15.7
|
1.0
|
N14
|
B:M1X203
|
2.8
|
16.5
|
1.0
|
SG
|
B:CYS12
|
3.0
|
18.5
|
1.0
|
O
|
B:GLY60
|
3.2
|
42.3
|
1.0
|
O
|
B:HOH412
|
3.3
|
32.0
|
1.0
|
O18
|
B:M1X203
|
3.5
|
16.2
|
1.0
|
HG
|
B:CYS12
|
3.6
|
17.9
|
1.0
|
O
|
B:PRO34
|
3.7
|
26.9
|
1.0
|
C12
|
B:M1X203
|
4.0
|
13.9
|
1.0
|
HB2
|
B:PRO34
|
4.0
|
26.0
|
1.0
|
C15
|
B:M1X203
|
4.2
|
14.9
|
1.0
|
H
|
B:GLY60
|
4.3
|
31.5
|
1.0
|
HA
|
B:THR35
|
4.3
|
24.5
|
1.0
|
HA
|
B:ALA59
|
4.4
|
19.6
|
1.0
|
C
|
B:GLY60
|
4.5
|
33.8
|
1.0
|
C
|
B:PRO34
|
4.6
|
24.2
|
1.0
|
N
|
B:GLY60
|
4.6
|
34.2
|
1.0
|
HB1
|
B:ALA59
|
4.6
|
18.7
|
1.0
|
HA
|
B:GLN61
|
4.7
|
25.8
|
1.0
|
CB
|
B:CYS12
|
4.7
|
16.9
|
1.0
|
HB3
|
B:CYS12
|
4.9
|
17.3
|
1.0
|
O
|
B:HOH425
|
4.9
|
30.0
|
1.0
|
C16
|
B:M1X203
|
4.9
|
13.7
|
1.0
|
CB
|
B:PRO34
|
4.9
|
25.5
|
1.0
|
O
|
B:HOH360
|
4.9
|
15.7
|
1.0
|
C
|
B:ALA59
|
4.9
|
24.6
|
1.0
|
HG21
|
B:THR35
|
5.0
|
25.6
|
1.0
|
N11
|
B:M1X203
|
5.0
|
14.5
|
1.0
|
HA
|
B:CYS12
|
5.0
|
16.9
|
1.0
|
|
Fluorine binding site 3 out
of 4 in 6ut0
Go back to
Fluorine Binding Sites List in 6ut0
Fluorine binding site 3 out
of 4 in the Identification of the Clinical Development Candidate MRTX849, A Covalent KRASG12C Inhibitor For the Treatment of Cancer
 Mono view
 Stereo pair view
|
A full contact list of Fluorine with other atoms in the F binding
site number 3 of Identification of the Clinical Development Candidate MRTX849, A Covalent KRASG12C Inhibitor For the Treatment of Cancer within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
C:F203
b:19.8
occ:1.00
|
F42
|
C:M1X203
|
0.0
|
19.8
|
1.0
|
C19
|
C:M1X203
|
1.4
|
17.2
|
1.0
|
C39
|
C:M1X203
|
2.4
|
16.8
|
1.0
|
C17
|
C:M1X203
|
2.4
|
16.4
|
1.0
|
C13
|
C:M1X203
|
2.5
|
16.3
|
1.0
|
N14
|
C:M1X203
|
2.7
|
15.0
|
1.0
|
O
|
C:HOH399
|
2.8
|
37.8
|
1.0
|
O
|
C:GLY60
|
3.1
|
22.3
|
1.0
|
SG
|
C:CYS12
|
3.1
|
15.2
|
1.0
|
O18
|
C:M1X203
|
3.5
|
16.6
|
1.0
|
HG
|
C:CYS12
|
3.7
|
14.9
|
1.0
|
O
|
C:PRO34
|
3.8
|
19.4
|
1.0
|
C12
|
C:M1X203
|
4.0
|
16.1
|
1.0
|
HA
|
C:THR35
|
4.1
|
17.7
|
1.0
|
C15
|
C:M1X203
|
4.1
|
14.2
|
1.0
|
C
|
C:GLY60
|
4.3
|
21.8
|
1.0
|
HA
|
C:ALA59
|
4.3
|
14.4
|
1.0
|
HB2
|
C:PRO34
|
4.3
|
19.2
|
1.0
|
HG21
|
C:THR35
|
4.4
|
20.1
|
1.0
|
HA
|
C:GLN61
|
4.4
|
24.4
|
1.0
|
HB1
|
C:ALA59
|
4.5
|
14.1
|
1.0
|
C
|
C:PRO34
|
4.6
|
17.7
|
1.0
|
N
|
C:GLY60
|
4.7
|
19.2
|
1.0
|
CB
|
C:CYS12
|
4.7
|
14.6
|
1.0
|
C
|
C:ALA59
|
4.7
|
17.2
|
1.0
|
H
|
C:GLY60
|
4.7
|
18.6
|
1.0
|
N11
|
C:M1X203
|
4.8
|
15.4
|
1.0
|
C16
|
C:M1X203
|
4.8
|
14.0
|
1.0
|
HA
|
C:CYS12
|
4.8
|
13.7
|
1.0
|
CA
|
C:ALA59
|
4.9
|
14.1
|
1.0
|
HB3
|
C:CYS12
|
4.9
|
14.5
|
1.0
|
CA
|
C:THR35
|
5.0
|
17.6
|
1.0
|
|
Fluorine binding site 4 out
of 4 in 6ut0
Go back to
Fluorine Binding Sites List in 6ut0
Fluorine binding site 4 out
of 4 in the Identification of the Clinical Development Candidate MRTX849, A Covalent KRASG12C Inhibitor For the Treatment of Cancer
 Mono view
 Stereo pair view
|
A full contact list of Fluorine with other atoms in the F binding
site number 4 of Identification of the Clinical Development Candidate MRTX849, A Covalent KRASG12C Inhibitor For the Treatment of Cancer within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
D:F203
b:22.1
occ:1.00
|
F42
|
D:M1X203
|
0.0
|
22.1
|
1.0
|
C19
|
D:M1X203
|
1.3
|
21.2
|
1.0
|
C39
|
D:M1X203
|
2.4
|
22.2
|
1.0
|
C17
|
D:M1X203
|
2.4
|
20.7
|
1.0
|
C13
|
D:M1X203
|
2.7
|
19.1
|
1.0
|
N14
|
D:M1X203
|
2.8
|
18.5
|
1.0
|
O
|
D:HOH322
|
3.0
|
28.0
|
1.0
|
SG
|
D:CYS12
|
3.1
|
26.4
|
1.0
|
O
|
D:GLY60
|
3.2
|
22.4
|
1.0
|
O18
|
D:M1X203
|
3.5
|
23.9
|
1.0
|
HG
|
D:CYS12
|
3.6
|
26.0
|
1.0
|
O
|
D:PRO34
|
3.6
|
27.2
|
1.0
|
HA
|
D:THR35
|
4.1
|
28.1
|
1.0
|
C12
|
D:M1X203
|
4.2
|
20.4
|
1.0
|
C15
|
D:M1X203
|
4.3
|
18.6
|
1.0
|
HB2
|
D:PRO34
|
4.3
|
31.9
|
1.0
|
C
|
D:GLY60
|
4.5
|
22.3
|
1.0
|
HA
|
D:GLN61
|
4.5
|
24.3
|
1.0
|
HA
|
D:ALA59
|
4.5
|
19.6
|
1.0
|
C
|
D:PRO34
|
4.5
|
29.0
|
1.0
|
CB
|
D:CYS12
|
4.7
|
25.4
|
1.0
|
HB1
|
D:ALA59
|
4.7
|
19.8
|
1.0
|
HG21
|
D:THR35
|
4.8
|
31.6
|
1.0
|
N
|
D:GLY60
|
4.9
|
21.2
|
1.0
|
HA
|
D:CYS12
|
4.9
|
24.5
|
1.0
|
HB3
|
D:PRO34
|
4.9
|
31.9
|
1.0
|
H
|
D:GLY60
|
4.9
|
21.5
|
1.0
|
HB3
|
D:CYS12
|
4.9
|
25.5
|
1.0
|
O
|
D:HOH333
|
4.9
|
23.9
|
1.0
|
C
|
D:ALA59
|
4.9
|
21.1
|
1.0
|
C16
|
D:M1X203
|
5.0
|
18.3
|
1.0
|
CB
|
D:PRO34
|
5.0
|
32.2
|
1.0
|
|
Reference:
J.B.Fell,
J.P.Fischer,
B.R.Baer,
J.F.Blake,
K.Bouhana,
D.M.Briere,
K.D.Brown,
L.E.Burgess,
A.C.Burns,
M.R.Burkard,
H.Chiang,
M.J.Chicarelli,
A.W.Cook,
J.J.Gaudino,
J.Hallin,
L.Hanson,
D.P.Hartley,
E.J.Hicken,
G.P.Hingorani,
R.J.Hinklin,
M.J.Mejia,
P.Olson,
J.N.Otten,
S.P.Rhodes,
M.E.Rodriguez,
P.Savechenkov,
D.J.Smith,
N.Sudhakar,
F.X.Sullivan,
T.P.Tang,
G.P.Vigers,
L.Wollenberg,
J.G.Christensen,
M.A.Marx.
Identification of the Clinical Development CANDIDATEMRTX849, A Covalent KRASG12CINHIBITOR For the Treatment of Cancer. J.Med.Chem. 2020.
ISSN: ISSN 0022-2623
PubMed: 32250617
DOI: 10.1021/ACS.JMEDCHEM.9B02052
Page generated: Fri Aug 2 02:36:29 2024
|