Atomistry » Fluorine » PDB 6ugr-6v2u » 6ut0
Atomistry »
  Fluorine »
    PDB 6ugr-6v2u »
      6ut0 »

Fluorine in PDB 6ut0: Identification of the Clinical Development Candidate MRTX849, A Covalent KRASG12C Inhibitor For the Treatment of Cancer

Protein crystallography data

The structure of Identification of the Clinical Development Candidate MRTX849, A Covalent KRASG12C Inhibitor For the Treatment of Cancer, PDB code: 6ut0 was solved by G.P.Vigers, D.J.Smith, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 28.32 / 1.94
Space group P 1 21 1
Cell size a, b, c (Å), α, β, γ (°) 74.918, 61.800, 76.050, 90.00, 111.37, 90.00
R / Rfree (%) 17.5 / 22.2

Other elements in 6ut0:

The structure of Identification of the Clinical Development Candidate MRTX849, A Covalent KRASG12C Inhibitor For the Treatment of Cancer also contains other interesting chemical elements:

Magnesium (Mg) 4 atoms
Chlorine (Cl) 4 atoms

Fluorine Binding Sites:

The binding sites of Fluorine atom in the Identification of the Clinical Development Candidate MRTX849, A Covalent KRASG12C Inhibitor For the Treatment of Cancer (pdb code 6ut0). This binding sites where shown within 5.0 Angstroms radius around Fluorine atom.
In total 4 binding sites of Fluorine where determined in the Identification of the Clinical Development Candidate MRTX849, A Covalent KRASG12C Inhibitor For the Treatment of Cancer, PDB code: 6ut0:
Jump to Fluorine binding site number: 1; 2; 3; 4;

Fluorine binding site 1 out of 4 in 6ut0

Go back to Fluorine Binding Sites List in 6ut0
Fluorine binding site 1 out of 4 in the Identification of the Clinical Development Candidate MRTX849, A Covalent KRASG12C Inhibitor For the Treatment of Cancer


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 1 of Identification of the Clinical Development Candidate MRTX849, A Covalent KRASG12C Inhibitor For the Treatment of Cancer within 5.0Å range:
probe atom residue distance (Å) B Occ
A:F203

b:22.1
occ:1.00
F42 A:M1X203 0.0 22.1 1.0
C19 A:M1X203 1.4 21.3 1.0
C17 A:M1X203 2.4 19.8 1.0
C39 A:M1X203 2.4 20.1 1.0
C13 A:M1X203 2.7 19.2 1.0
N14 A:M1X203 2.7 18.5 1.0
SG A:CYS12 3.2 23.8 1.0
O A:GLY60 3.2 20.3 1.0
O18 A:M1X203 3.5 18.8 1.0
O A:PRO34 3.6 18.4 1.0
HA A:THR35 3.8 16.6 1.0
HG A:CYS12 3.9 22.4 1.0
HB1 A:ALA59 4.1 16.7 1.0
C15 A:M1X203 4.2 18.8 1.0
C12 A:M1X203 4.2 19.2 1.0
HA A:ALA59 4.2 17.0 1.0
HB2 A:PRO34 4.3 20.6 1.0
C A:GLY60 4.5 21.6 1.0
C A:PRO34 4.5 19.3 1.0
HG21 A:THR35 4.5 17.5 1.0
HA A:GLN61 4.7 23.8 1.0
N A:GLY60 4.7 21.5 1.0
H A:GLY60 4.7 21.2 1.0
C A:ALA59 4.7 19.0 1.0
CB A:CYS12 4.8 20.2 1.0
CA A:ALA59 4.8 17.1 1.0
CA A:THR35 4.8 16.8 1.0
HB3 A:CYS12 4.9 20.8 1.0
CB A:ALA59 4.9 16.5 1.0
HA A:CYS12 4.9 19.0 1.0
C16 A:M1X203 5.0 17.5 1.0
O A:HOH340 5.0 14.2 1.0

Fluorine binding site 2 out of 4 in 6ut0

Go back to Fluorine Binding Sites List in 6ut0
Fluorine binding site 2 out of 4 in the Identification of the Clinical Development Candidate MRTX849, A Covalent KRASG12C Inhibitor For the Treatment of Cancer


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 2 of Identification of the Clinical Development Candidate MRTX849, A Covalent KRASG12C Inhibitor For the Treatment of Cancer within 5.0Å range:
probe atom residue distance (Å) B Occ
B:F203

b:20.6
occ:1.00
F42 B:M1X203 0.0 20.6 1.0
C19 B:M1X203 1.3 19.3 1.0
C39 B:M1X203 2.4 19.5 1.0
C17 B:M1X203 2.4 17.0 1.0
C13 B:M1X203 2.6 15.7 1.0
N14 B:M1X203 2.8 16.5 1.0
SG B:CYS12 3.0 18.5 1.0
O B:GLY60 3.2 42.3 1.0
O B:HOH412 3.3 32.0 1.0
O18 B:M1X203 3.5 16.2 1.0
HG B:CYS12 3.6 17.9 1.0
O B:PRO34 3.7 26.9 1.0
C12 B:M1X203 4.0 13.9 1.0
HB2 B:PRO34 4.0 26.0 1.0
C15 B:M1X203 4.2 14.9 1.0
H B:GLY60 4.3 31.5 1.0
HA B:THR35 4.3 24.5 1.0
HA B:ALA59 4.4 19.6 1.0
C B:GLY60 4.5 33.8 1.0
C B:PRO34 4.6 24.2 1.0
N B:GLY60 4.6 34.2 1.0
HB1 B:ALA59 4.6 18.7 1.0
HA B:GLN61 4.7 25.8 1.0
CB B:CYS12 4.7 16.9 1.0
HB3 B:CYS12 4.9 17.3 1.0
O B:HOH425 4.9 30.0 1.0
C16 B:M1X203 4.9 13.7 1.0
CB B:PRO34 4.9 25.5 1.0
O B:HOH360 4.9 15.7 1.0
C B:ALA59 4.9 24.6 1.0
HG21 B:THR35 5.0 25.6 1.0
N11 B:M1X203 5.0 14.5 1.0
HA B:CYS12 5.0 16.9 1.0

Fluorine binding site 3 out of 4 in 6ut0

Go back to Fluorine Binding Sites List in 6ut0
Fluorine binding site 3 out of 4 in the Identification of the Clinical Development Candidate MRTX849, A Covalent KRASG12C Inhibitor For the Treatment of Cancer


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 3 of Identification of the Clinical Development Candidate MRTX849, A Covalent KRASG12C Inhibitor For the Treatment of Cancer within 5.0Å range:
probe atom residue distance (Å) B Occ
C:F203

b:19.8
occ:1.00
F42 C:M1X203 0.0 19.8 1.0
C19 C:M1X203 1.4 17.2 1.0
C39 C:M1X203 2.4 16.8 1.0
C17 C:M1X203 2.4 16.4 1.0
C13 C:M1X203 2.5 16.3 1.0
N14 C:M1X203 2.7 15.0 1.0
O C:HOH399 2.8 37.8 1.0
O C:GLY60 3.1 22.3 1.0
SG C:CYS12 3.1 15.2 1.0
O18 C:M1X203 3.5 16.6 1.0
HG C:CYS12 3.7 14.9 1.0
O C:PRO34 3.8 19.4 1.0
C12 C:M1X203 4.0 16.1 1.0
HA C:THR35 4.1 17.7 1.0
C15 C:M1X203 4.1 14.2 1.0
C C:GLY60 4.3 21.8 1.0
HA C:ALA59 4.3 14.4 1.0
HB2 C:PRO34 4.3 19.2 1.0
HG21 C:THR35 4.4 20.1 1.0
HA C:GLN61 4.4 24.4 1.0
HB1 C:ALA59 4.5 14.1 1.0
C C:PRO34 4.6 17.7 1.0
N C:GLY60 4.7 19.2 1.0
CB C:CYS12 4.7 14.6 1.0
C C:ALA59 4.7 17.2 1.0
H C:GLY60 4.7 18.6 1.0
N11 C:M1X203 4.8 15.4 1.0
C16 C:M1X203 4.8 14.0 1.0
HA C:CYS12 4.8 13.7 1.0
CA C:ALA59 4.9 14.1 1.0
HB3 C:CYS12 4.9 14.5 1.0
CA C:THR35 5.0 17.6 1.0

Fluorine binding site 4 out of 4 in 6ut0

Go back to Fluorine Binding Sites List in 6ut0
Fluorine binding site 4 out of 4 in the Identification of the Clinical Development Candidate MRTX849, A Covalent KRASG12C Inhibitor For the Treatment of Cancer


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 4 of Identification of the Clinical Development Candidate MRTX849, A Covalent KRASG12C Inhibitor For the Treatment of Cancer within 5.0Å range:
probe atom residue distance (Å) B Occ
D:F203

b:22.1
occ:1.00
F42 D:M1X203 0.0 22.1 1.0
C19 D:M1X203 1.3 21.2 1.0
C39 D:M1X203 2.4 22.2 1.0
C17 D:M1X203 2.4 20.7 1.0
C13 D:M1X203 2.7 19.1 1.0
N14 D:M1X203 2.8 18.5 1.0
O D:HOH322 3.0 28.0 1.0
SG D:CYS12 3.1 26.4 1.0
O D:GLY60 3.2 22.4 1.0
O18 D:M1X203 3.5 23.9 1.0
HG D:CYS12 3.6 26.0 1.0
O D:PRO34 3.6 27.2 1.0
HA D:THR35 4.1 28.1 1.0
C12 D:M1X203 4.2 20.4 1.0
C15 D:M1X203 4.3 18.6 1.0
HB2 D:PRO34 4.3 31.9 1.0
C D:GLY60 4.5 22.3 1.0
HA D:GLN61 4.5 24.3 1.0
HA D:ALA59 4.5 19.6 1.0
C D:PRO34 4.5 29.0 1.0
CB D:CYS12 4.7 25.4 1.0
HB1 D:ALA59 4.7 19.8 1.0
HG21 D:THR35 4.8 31.6 1.0
N D:GLY60 4.9 21.2 1.0
HA D:CYS12 4.9 24.5 1.0
HB3 D:PRO34 4.9 31.9 1.0
H D:GLY60 4.9 21.5 1.0
HB3 D:CYS12 4.9 25.5 1.0
O D:HOH333 4.9 23.9 1.0
C D:ALA59 4.9 21.1 1.0
C16 D:M1X203 5.0 18.3 1.0
CB D:PRO34 5.0 32.2 1.0

Reference:

J.B.Fell, J.P.Fischer, B.R.Baer, J.F.Blake, K.Bouhana, D.M.Briere, K.D.Brown, L.E.Burgess, A.C.Burns, M.R.Burkard, H.Chiang, M.J.Chicarelli, A.W.Cook, J.J.Gaudino, J.Hallin, L.Hanson, D.P.Hartley, E.J.Hicken, G.P.Hingorani, R.J.Hinklin, M.J.Mejia, P.Olson, J.N.Otten, S.P.Rhodes, M.E.Rodriguez, P.Savechenkov, D.J.Smith, N.Sudhakar, F.X.Sullivan, T.P.Tang, G.P.Vigers, L.Wollenberg, J.G.Christensen, M.A.Marx. Identification of the Clinical Development CANDIDATEMRTX849, A Covalent KRASG12CINHIBITOR For the Treatment of Cancer. J.Med.Chem. 2020.
ISSN: ISSN 0022-2623
PubMed: 32250617
DOI: 10.1021/ACS.JMEDCHEM.9B02052
Page generated: Fri Aug 2 02:36:29 2024

Last articles

Zn in 2YRC
Zn in 2YQP
Zn in 2YR2
Zn in 2YQL
Zn in 2YPT
Zn in 2YPA
Zn in 2YPU
Zn in 2YNW
Zn in 2YNT
Zn in 2YNV
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy