Fluorine in PDB 6vgn: CLPP1P2 Complex From M. Tuberculosis Bound to Adep

Enzymatic activity of CLPP1P2 Complex From M. Tuberculosis Bound to Adep

All present enzymatic activity of CLPP1P2 Complex From M. Tuberculosis Bound to Adep:
3.4.21.92;

Fluorine Binding Sites:

Pages:

>>> Page 1 <<< Page 2, Binding sites: 11 - 14;

Binding sites:

The binding sites of Fluorine atom in the CLPP1P2 Complex From M. Tuberculosis Bound to Adep (pdb code 6vgn). This binding sites where shown within 5.0 Angstroms radius around Fluorine atom.
In total 14 binding sites of Fluorine where determined in the CLPP1P2 Complex From M. Tuberculosis Bound to Adep, PDB code: 6vgn:
Jump to Fluorine binding site number: 1; 2; 3; 4; 5; 6; 7; 8; 9; 10;

Fluorine binding site 1 out of 14 in 6vgn

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Fluorine binding site 1 out of 14 in the CLPP1P2 Complex From M. Tuberculosis Bound to Adep


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 1 of CLPP1P2 Complex From M. Tuberculosis Bound to Adep within 5.0Å range:
probe atom residue distance (Å) B Occ
V:F2

b:20.0
occ:1.00
 F1 V:WFP2 0.0 20.0 1.0
CE1 V:WFP2 1.3 20.0 1.0
CZ V:WFP2 2.3 20.0 1.0
CD1 V:WFP2 2.4 20.0 1.0
CD2 B:LEU105 3.1 91.0 1.0
CD1 B:LEU105 3.4 91.0 1.0
CE2 V:WFP2 3.6 20.0 1.0
CE2 B:TYR75 3.6 82.4 1.0
CD1 A:LEU61 3.6 79.8 1.0
CG V:WFP2 3.6 20.0 1.0
CD2 B:TYR75 3.9 82.4 1.0
CG B:LEU105 3.9 91.0 1.0
CZ B:TYR75 4.1 82.4 1.0
CD2 V:WFP2 4.1 20.0 1.0
CD2 A:LEU61 4.2 79.8 1.0
CG A:LEU61 4.3 79.8 1.0
OG1 A:THR92 4.3 73.8 1.0
OH B:TYR75 4.5 82.4 1.0
CG B:TYR75 4.6 82.4 1.0
F2 V:WFP2 4.6 20.0 1.0
CE1 B:TYR75 4.7 82.4 1.0
SD A:MET57 4.8 84.9 1.0
CB V:WFP2 4.9 20.0 1.0
CD1 B:TYR75 4.9 82.4 1.0

Fluorine binding site 2 out of 14 in 6vgn

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Fluorine binding site 2 out of 14 in the CLPP1P2 Complex From M. Tuberculosis Bound to Adep


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 2 of CLPP1P2 Complex From M. Tuberculosis Bound to Adep within 5.0Å range:
probe atom residue distance (Å) B Occ
V:F2

b:20.0
occ:1.00
 F2 V:WFP2 0.0 20.0 1.0
CE2 V:WFP2 1.3 20.0 1.0
CZ V:WFP2 2.3 20.0 1.0
CD2 V:WFP2 2.4 20.0 1.0
CB A:TYR95 2.6 78.4 1.0
CG A:TYR95 2.7 78.4 1.0
CD2 A:TYR95 3.0 78.4 1.0
CD2 B:LEU127 3.4 83.3 1.0
CD1 A:TYR95 3.4 78.4 1.0
CE1 V:WFP2 3.6 20.0 1.0
CG V:WFP2 3.6 20.0 1.0
CA A:THR92 3.8 54.6 1.0
CE2 A:TYR95 3.9 78.4 1.0
CD1 B:LEU127 4.0 83.3 1.0
O A:ASP91 4.0 55.0 1.0
CD1 V:WFP2 4.1 20.0 1.0
CA A:TYR95 4.1 58.6 1.0
OG1 A:THR92 4.2 73.8 1.0
CE1 A:TYR95 4.2 78.4 1.0
CG B:LEU127 4.3 83.3 1.0
N A:THR92 4.4 54.7 1.0
CB A:THR92 4.4 73.8 1.0
CZ A:TYR95 4.4 78.4 1.0
CG2 A:THR92 4.4 73.8 1.0
C A:ASP91 4.5 54.7 1.0
O A:THR92 4.5 54.3 1.0
C A:THR92 4.6 54.4 1.0
F1 V:WFP2 4.6 20.0 1.0
N A:TYR95 4.8 57.4 1.0
C A:TYR95 4.8 60.8 1.0
CB V:WFP2 4.9 20.0 1.0

Fluorine binding site 3 out of 14 in 6vgn

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Fluorine binding site 3 out of 14 in the CLPP1P2 Complex From M. Tuberculosis Bound to Adep


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 3 of CLPP1P2 Complex From M. Tuberculosis Bound to Adep within 5.0Å range:
probe atom residue distance (Å) B Occ
W:F2

b:20.0
occ:1.00
 F1 W:WFP2 0.0 20.0 1.0
CE1 W:WFP2 1.3 20.0 1.0
CZ W:WFP2 2.3 20.0 1.0
CD1 W:WFP2 2.4 20.0 1.0
CD2 A:LEU105 3.1 91.0 1.0
CD1 A:LEU105 3.4 91.0 1.0
CE2 W:WFP2 3.6 20.0 1.0
CE2 A:TYR75 3.6 82.4 1.0
CD1 G:LEU61 3.6 79.8 1.0
CG W:WFP2 3.6 20.0 1.0
CD2 A:TYR75 3.9 82.4 1.0
CG A:LEU105 3.9 91.0 1.0
CZ A:TYR75 4.1 82.4 1.0
CD2 W:WFP2 4.1 20.0 1.0
CD2 G:LEU61 4.2 79.8 1.0
CG G:LEU61 4.3 79.8 1.0
OG1 G:THR92 4.3 73.8 1.0
OH A:TYR75 4.5 82.4 1.0
CG A:TYR75 4.6 82.4 1.0
F2 W:WFP2 4.6 20.0 1.0
CE1 A:TYR75 4.7 82.4 1.0
SD G:MET57 4.8 84.9 1.0
CB W:WFP2 4.9 20.0 1.0
CD1 A:TYR75 4.9 82.4 1.0

Fluorine binding site 4 out of 14 in 6vgn

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Fluorine binding site 4 out of 14 in the CLPP1P2 Complex From M. Tuberculosis Bound to Adep


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 4 of CLPP1P2 Complex From M. Tuberculosis Bound to Adep within 5.0Å range:
probe atom residue distance (Å) B Occ
W:F2

b:20.0
occ:1.00
 F2 W:WFP2 0.0 20.0 1.0
CE2 W:WFP2 1.3 20.0 1.0
CZ W:WFP2 2.3 20.0 1.0
CD2 W:WFP2 2.4 20.0 1.0
CB G:TYR95 2.6 78.4 1.0
CG G:TYR95 2.7 78.4 1.0
CD2 G:TYR95 3.0 78.4 1.0
CD2 A:LEU127 3.4 83.3 1.0
CD1 G:TYR95 3.4 78.4 1.0
CE1 W:WFP2 3.6 20.0 1.0
CG W:WFP2 3.6 20.0 1.0
CA G:THR92 3.8 54.6 1.0
CE2 G:TYR95 3.9 78.4 1.0
CD1 A:LEU127 4.0 83.3 1.0
O G:ASP91 4.0 55.0 1.0
CD1 W:WFP2 4.1 20.0 1.0
CA G:TYR95 4.1 58.6 1.0
OG1 G:THR92 4.2 73.8 1.0
CE1 G:TYR95 4.2 78.4 1.0
CG A:LEU127 4.3 83.3 1.0
N G:THR92 4.4 54.7 1.0
CB G:THR92 4.4 73.8 1.0
CZ G:TYR95 4.4 78.4 1.0
CG2 G:THR92 4.4 73.8 1.0
C G:ASP91 4.5 54.7 1.0
O G:THR92 4.5 54.3 1.0
C G:THR92 4.6 54.4 1.0
F1 W:WFP2 4.6 20.0 1.0
N G:TYR95 4.8 57.4 1.0
C G:TYR95 4.8 60.8 1.0
CB W:WFP2 4.9 20.0 1.0

Fluorine binding site 5 out of 14 in 6vgn

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Fluorine binding site 5 out of 14 in the CLPP1P2 Complex From M. Tuberculosis Bound to Adep


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 5 of CLPP1P2 Complex From M. Tuberculosis Bound to Adep within 5.0Å range:
probe atom residue distance (Å) B Occ
X:F2

b:20.0
occ:1.00
 F1 X:WFP2 0.0 20.0 1.0
CE1 X:WFP2 1.3 20.0 1.0
CZ X:WFP2 2.3 20.0 1.0
CD1 X:WFP2 2.4 20.0 1.0
CD2 G:LEU105 3.1 91.0 1.0
CD1 G:LEU105 3.4 91.0 1.0
CE2 X:WFP2 3.6 20.0 1.0
CE2 G:TYR75 3.6 82.4 1.0
CD1 F:LEU61 3.6 79.8 1.0
CG X:WFP2 3.6 20.0 1.0
CD2 G:TYR75 3.9 82.4 1.0
CG G:LEU105 3.9 91.0 1.0
CZ G:TYR75 4.1 82.4 1.0
CD2 X:WFP2 4.1 20.0 1.0
CD2 F:LEU61 4.2 79.8 1.0
CG F:LEU61 4.3 79.8 1.0
OG1 F:THR92 4.3 73.8 1.0
OH G:TYR75 4.5 82.4 1.0
CG G:TYR75 4.6 82.4 1.0
F2 X:WFP2 4.6 20.0 1.0
CE1 G:TYR75 4.7 82.4 1.0
SD F:MET57 4.8 84.9 1.0
CB X:WFP2 4.9 20.0 1.0
CD1 G:TYR75 4.9 82.4 1.0

Fluorine binding site 6 out of 14 in 6vgn

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Fluorine binding site 6 out of 14 in the CLPP1P2 Complex From M. Tuberculosis Bound to Adep


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 6 of CLPP1P2 Complex From M. Tuberculosis Bound to Adep within 5.0Å range:
probe atom residue distance (Å) B Occ
X:F2

b:20.0
occ:1.00
 F2 X:WFP2 0.0 20.0 1.0
CE2 X:WFP2 1.3 20.0 1.0
CZ X:WFP2 2.3 20.0 1.0
CD2 X:WFP2 2.4 20.0 1.0
CB F:TYR95 2.6 78.4 1.0
CG F:TYR95 2.7 78.4 1.0
CD2 F:TYR95 3.0 78.4 1.0
CD2 G:LEU127 3.4 83.3 1.0
CD1 F:TYR95 3.4 78.4 1.0
CE1 X:WFP2 3.6 20.0 1.0
CG X:WFP2 3.6 20.0 1.0
CA F:THR92 3.8 54.6 1.0
CE2 F:TYR95 3.9 78.4 1.0
CD1 G:LEU127 4.0 83.3 1.0
O F:ASP91 4.0 55.0 1.0
CD1 X:WFP2 4.1 20.0 1.0
CA F:TYR95 4.1 58.6 1.0
OG1 F:THR92 4.2 73.8 1.0
CE1 F:TYR95 4.2 78.4 1.0
CG G:LEU127 4.3 83.3 1.0
N F:THR92 4.4 54.7 1.0
CB F:THR92 4.4 73.8 1.0
CZ F:TYR95 4.4 78.4 1.0
CG2 F:THR92 4.4 73.8 1.0
C F:ASP91 4.5 54.7 1.0
O F:THR92 4.5 54.3 1.0
C F:THR92 4.6 54.4 1.0
F1 X:WFP2 4.6 20.0 1.0
N F:TYR95 4.8 57.4 1.0
C F:TYR95 4.8 60.8 1.0
CB X:WFP2 4.9 20.0 1.0

Fluorine binding site 7 out of 14 in 6vgn

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Fluorine binding site 7 out of 14 in the CLPP1P2 Complex From M. Tuberculosis Bound to Adep


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 7 of CLPP1P2 Complex From M. Tuberculosis Bound to Adep within 5.0Å range:
probe atom residue distance (Å) B Occ
Y:F2

b:20.0
occ:1.00
 F1 Y:WFP2 0.0 20.0 1.0
CE1 Y:WFP2 1.3 20.0 1.0
CZ Y:WFP2 2.3 20.0 1.0
CD1 Y:WFP2 2.4 20.0 1.0
CD2 F:LEU105 3.1 91.0 1.0
CD1 F:LEU105 3.4 91.0 1.0
CE2 Y:WFP2 3.6 20.0 1.0
CE2 F:TYR75 3.6 82.4 1.0
CD1 E:LEU61 3.6 79.8 1.0
CG Y:WFP2 3.6 20.0 1.0
CD2 F:TYR75 3.9 82.4 1.0
CG F:LEU105 3.9 91.0 1.0
CZ F:TYR75 4.1 82.4 1.0
CD2 Y:WFP2 4.1 20.0 1.0
CD2 E:LEU61 4.2 79.8 1.0
CG E:LEU61 4.3 79.8 1.0
OG1 E:THR92 4.3 73.8 1.0
OH F:TYR75 4.5 82.4 1.0
CG F:TYR75 4.6 82.4 1.0
F2 Y:WFP2 4.6 20.0 1.0
CE1 F:TYR75 4.7 82.4 1.0
SD E:MET57 4.8 84.9 1.0
CB Y:WFP2 4.9 20.0 1.0
CD1 F:TYR75 4.9 82.4 1.0

Fluorine binding site 8 out of 14 in 6vgn

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Fluorine binding site 8 out of 14 in the CLPP1P2 Complex From M. Tuberculosis Bound to Adep


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 8 of CLPP1P2 Complex From M. Tuberculosis Bound to Adep within 5.0Å range:
probe atom residue distance (Å) B Occ
Y:F2

b:20.0
occ:1.00
 F2 Y:WFP2 0.0 20.0 1.0
CE2 Y:WFP2 1.3 20.0 1.0
CZ Y:WFP2 2.3 20.0 1.0
CD2 Y:WFP2 2.4 20.0 1.0
CB E:TYR95 2.6 78.4 1.0
CG E:TYR95 2.7 78.4 1.0
CD2 E:TYR95 3.0 78.4 1.0
CD2 F:LEU127 3.4 83.3 1.0
CD1 E:TYR95 3.4 78.4 1.0
CE1 Y:WFP2 3.6 20.0 1.0
CG Y:WFP2 3.6 20.0 1.0
CA E:THR92 3.8 54.6 1.0
CE2 E:TYR95 3.9 78.4 1.0
CD1 F:LEU127 4.0 83.3 1.0
O E:ASP91 4.0 55.0 1.0
CD1 Y:WFP2 4.1 20.0 1.0
CA E:TYR95 4.1 58.6 1.0
OG1 E:THR92 4.2 73.8 1.0
CE1 E:TYR95 4.2 78.4 1.0
CG F:LEU127 4.3 83.3 1.0
N E:THR92 4.4 54.7 1.0
CB E:THR92 4.4 73.8 1.0
CZ E:TYR95 4.4 78.4 1.0
CG2 E:THR92 4.4 73.8 1.0
C E:ASP91 4.5 54.7 1.0
O E:THR92 4.5 54.3 1.0
C E:THR92 4.6 54.4 1.0
F1 Y:WFP2 4.6 20.0 1.0
N E:TYR95 4.8 57.4 1.0
C E:TYR95 4.8 60.8 1.0
CB Y:WFP2 4.9 20.0 1.0

Fluorine binding site 9 out of 14 in 6vgn

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Fluorine binding site 9 out of 14 in the CLPP1P2 Complex From M. Tuberculosis Bound to Adep


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 9 of CLPP1P2 Complex From M. Tuberculosis Bound to Adep within 5.0Å range:
probe atom residue distance (Å) B Occ
Z:F2

b:20.0
occ:1.00
 F1 Z:WFP2 0.0 20.0 1.0
CE1 Z:WFP2 1.3 20.0 1.0
CZ Z:WFP2 2.3 20.0 1.0
CD1 Z:WFP2 2.4 20.0 1.0
CD2 E:LEU105 3.1 91.0 1.0
CD1 E:LEU105 3.4 91.0 1.0
CE2 Z:WFP2 3.6 20.0 1.0
CE2 E:TYR75 3.6 82.4 1.0
CD1 D:LEU61 3.6 79.8 1.0
CG Z:WFP2 3.6 20.0 1.0
CD2 E:TYR75 3.9 82.4 1.0
CG E:LEU105 3.9 91.0 1.0
CZ E:TYR75 4.1 82.4 1.0
CD2 Z:WFP2 4.1 20.0 1.0
CD2 D:LEU61 4.2 79.8 1.0
CG D:LEU61 4.3 79.8 1.0
OG1 D:THR92 4.3 73.8 1.0
OH E:TYR75 4.5 82.4 1.0
CG E:TYR75 4.6 82.4 1.0
F2 Z:WFP2 4.6 20.0 1.0
CE1 E:TYR75 4.7 82.4 1.0
SD D:MET57 4.8 84.9 1.0
CB Z:WFP2 4.9 20.0 1.0
CD1 E:TYR75 4.9 82.4 1.0

Fluorine binding site 10 out of 14 in 6vgn

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Fluorine binding site 10 out of 14 in the CLPP1P2 Complex From M. Tuberculosis Bound to Adep


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 10 of CLPP1P2 Complex From M. Tuberculosis Bound to Adep within 5.0Å range:
probe atom residue distance (Å) B Occ
Z:F2

b:20.0
occ:1.00
 F2 Z:WFP2 0.0 20.0 1.0
CE2 Z:WFP2 1.3 20.0 1.0
CZ Z:WFP2 2.3 20.0 1.0
CD2 Z:WFP2 2.4 20.0 1.0
CB D:TYR95 2.6 78.4 1.0
CG D:TYR95 2.7 78.4 1.0
CD2 D:TYR95 3.0 78.4 1.0
CD2 E:LEU127 3.4 83.3 1.0
CD1 D:TYR95 3.4 78.4 1.0
CE1 Z:WFP2 3.6 20.0 1.0
CG Z:WFP2 3.6 20.0 1.0
CA D:THR92 3.8 54.6 1.0
CE2 D:TYR95 3.9 78.4 1.0
CD1 E:LEU127 4.0 83.3 1.0
O D:ASP91 4.0 55.0 1.0
CD1 Z:WFP2 4.1 20.0 1.0
CA D:TYR95 4.1 58.6 1.0
OG1 D:THR92 4.2 73.8 1.0
CE1 D:TYR95 4.2 78.4 1.0
CG E:LEU127 4.3 83.3 1.0
N D:THR92 4.4 54.7 1.0
CB D:THR92 4.4 73.8 1.0
CZ D:TYR95 4.4 78.4 1.0
CG2 D:THR92 4.4 73.8 1.0
C D:ASP91 4.5 54.7 1.0
O D:THR92 4.5 54.3 1.0
C D:THR92 4.6 54.4 1.0
F1 Z:WFP2 4.6 20.0 1.0
N D:TYR95 4.8 57.4 1.0
C D:TYR95 4.8 60.8 1.0
CB Z:WFP2 4.9 20.0 1.0

Reference:

S.Vahidi, Z.A.Ripstein, J.B.Juravsky, E.Rennella, A.L.Goldberg, A.K.Mittermaier, J.L.Rubinstein, L.E.Kay. An Allosteric Switch Regulatesmycobacterium TUBERCULOSISCLPP1P2 Protease Function As Established By Cryo-Em and Methyl-Trosy uc(Nmr). Proc.Natl.Acad.Sci.Usa 2020.
ISSN: ESSN 1091-6490
PubMed: 32123115
DOI: 10.1073/PNAS.1921630117
Page generated: Sun Dec 13 13:23:40 2020

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