Fluorine in PDB 6wqn: Structure of the 50S Subunit of the Ribosome From Methicillin Resistant Staphylococcus Aureus in Complex with the Antibiotic, Contezolid

The binding sites of Fluorine atom in the Structure of the 50S Subunit of the Ribosome From Methicillin Resistant Staphylococcus Aureus in Complex with the Antibiotic, Contezolid (pdb code 6wqn). This binding sites where shown within 5.0 Angstroms radius around Fluorine atom.
In total 3 binding sites of Fluorine where determined in the Structure of the 50S Subunit of the Ribosome From Methicillin Resistant Staphylococcus Aureus in Complex with the Antibiotic, Contezolid, PDB code: 6wqn:
Jump to Fluorine binding site number: 1; 2; 3;

Fluorine binding site 1 out of 3 in the Structure of the 50S Subunit of the Ribosome From Methicillin Resistant Staphylococcus Aureus in Complex with the Antibiotic, Contezolid


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 1 of Structure of the 50S Subunit of the Ribosome From Methicillin Resistant Staphylococcus Aureus in Complex with the Antibiotic, Contezolid within 5.0Å range: probe atom residue distance (Å) B Occ 1:F3001 b:7.5 occ:1.00 F14 1:ZC03001 0.0 7.5 1.0 C13 1:ZC03001 1.4 7.5 1.0 C12 1:ZC03001 2.4 7.5 1.0 C08 1:ZC03001 2.4 7.5 1.0 H041 1:ZC03001 2.7 7.5 1.0 F15 1:ZC03001 2.7 7.5 1.0 N03 1:ZC03001 2.8 7.5 1.0 C04 1:ZC03001 2.9 7.5 1.0 N3 1:A2478 2.9 3.2 1.0 C4 1:A2478 3.1 3.2 1.0 C2 1:A2478 3.2 3.2 1.0 C6 1:C2479 3.4 9.7 1.0 N1 1:C2479 3.6 9.7 1.0 C5 1:A2478 3.6 3.2 1.0 C11 1:ZC03001 3.6 7.5 1.0 C09 1:ZC03001 3.6 7.5 1.0 N1 1:A2478 3.7 3.2 1.0 O4' 1:C2479 3.7 9.7 1.0 N9 1:A2478 3.7 3.2 1.0 C5 1:C2479 3.8 9.7 1.0 C6 1:A2478 3.8 3.2 1.0 C2' 1:A2478 3.9 3.2 1.0 C1' 1:C2479 3.9 9.7 1.0 H022 1:ZC03001 4.0 7.5 1.0 C02 1:ZC03001 4.0 7.5 1.0 C10 1:ZC03001 4.1 7.5 1.0 C2 1:C2479 4.1 9.7 1.0 C1' 1:A2478 4.2 3.2 1.0 C05 1:ZC03001 4.2 7.5 1.0 C4 1:C2479 4.3 9.7 1.0 N7 1:A2478 4.4 3.2 1.0 C8 1:A2478 4.4 3.2 1.0 H021 1:ZC03001 4.4 7.5 1.0 N3 1:C2479 4.5 9.7 1.0 H2 1:ZC03001 4.5 7.5 1.0 O2' 1:A2478 4.5 3.2 1.0 F29 1:ZC03001 4.8 7.5 1.0 O2 1:C2479 4.8 9.7 1.0 N6 1:A2478 4.8 3.2 1.0 N16 1:ZC03001 4.8 7.5 1.0 C3' 1:A2478 4.9 3.2 1.0

Fluorine binding site 2 out of 3 in the Structure of the 50S Subunit of the Ribosome From Methicillin Resistant Staphylococcus Aureus in Complex with the Antibiotic, Contezolid


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 2 of Structure of the 50S Subunit of the Ribosome From Methicillin Resistant Staphylococcus Aureus in Complex with the Antibiotic, Contezolid within 5.0Å range: probe atom residue distance (Å) B Occ 1:F3001 b:7.5 occ:1.00 F15 1:ZC03001 0.0 7.5 1.0 C12 1:ZC03001 1.4 7.5 1.0 C13 1:ZC03001 2.4 7.5 1.0 C11 1:ZC03001 2.4 7.5 1.0 H172 1:ZC03001 2.5 7.5 1.0 F14 1:ZC03001 2.7 7.5 1.0 N16 1:ZC03001 2.8 7.5 1.0 C17 1:ZC03001 2.9 7.5 1.0 H171 1:ZC03001 3.0 7.5 1.0 C6 1:A2478 3.2 3.2 1.0 N3 1:C2479 3.2 9.7 1.0 N1 1:A2478 3.3 3.2 1.0 C4 1:C2479 3.4 9.7 1.0 N6 1:A2478 3.4 3.2 1.0 C2 1:C2479 3.5 9.7 1.0 C08 1:ZC03001 3.6 7.5 1.0 C10 1:ZC03001 3.6 7.5 1.0 C5 1:A2478 3.7 3.2 1.0 C2 1:A2478 3.8 3.2 1.0 C5 1:C2479 3.8 9.7 1.0 N1 1:C2479 3.9 9.7 1.0 N4 1:C2479 3.9 9.7 1.0 O2 1:C2479 4.0 9.7 1.0 C6 1:C2479 4.0 9.7 1.0 C20 1:ZC03001 4.1 7.5 1.0 C09 1:ZC03001 4.1 7.5 1.0 C4 1:A2478 4.2 3.2 1.0 C18 1:ZC03001 4.3 7.5 1.0 N3 1:A2478 4.3 3.2 1.0 H101 1:ZC03001 4.4 7.5 1.0 N7 1:A2478 4.5 3.2 1.0 H181 1:ZC03001 4.5 7.5 1.0 O6 1:G2088 4.7 6.5 1.0 O21 1:ZC03001 4.7 7.5 1.0 C1' 1:C2479 4.8 9.7 1.0 N03 1:ZC03001 4.8 7.5 1.0 O19 1:ZC03001 4.9 7.5 1.0 O4 1:U2531 5.0 4.2 1.0 H221 1:ZC03001 5.0 7.5 1.0 H041 1:ZC03001 5.0 7.5 1.0

Fluorine binding site 3 out of 3 in the Structure of the 50S Subunit of the Ribosome From Methicillin Resistant Staphylococcus Aureus in Complex with the Antibiotic, Contezolid


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 3 of Structure of the 50S Subunit of the Ribosome From Methicillin Resistant Staphylococcus Aureus in Complex with the Antibiotic, Contezolid within 5.0Å range: probe atom residue distance (Å) B Occ 1:F3001 b:7.5 occ:1.00 F29 1:ZC03001 0.0 7.5 1.0 C09 1:ZC03001 1.4 7.5 1.0 C10 1:ZC03001 2.4 7.5 1.0 C08 1:ZC03001 2.4 7.5 1.0 H021 1:ZC03001 2.5 7.5 1.0 H101 1:ZC03001 2.5 7.5 1.0 N03 1:ZC03001 2.8 7.5 1.0 C02 1:ZC03001 3.0 7.5 1.0 H012 1:ZC03001 3.2 7.5 1.0 O2' 1:G2532 3.4 12.5 1.0 O4' 1:U2533 3.5 18.3 1.0 C01 1:ZC03001 3.6 7.5 1.0 C11 1:ZC03001 3.6 7.5 1.0 C13 1:ZC03001 3.6 7.5 1.0 O5' 1:U2533 3.7 18.3 1.0 H022 1:ZC03001 3.9 7.5 1.0 C4' 1:U2533 3.9 18.3 1.0 C04 1:ZC03001 4.1 7.5 1.0 C12 1:ZC03001 4.1 7.5 1.0 H011 1:ZC03001 4.2 7.5 1.0 O3' 1:G2532 4.3 12.5 1.0 C5' 1:U2533 4.4 18.3 1.0 C1' 1:U2533 4.4 18.3 1.0 H041 1:ZC03001 4.5 7.5 1.0 P 1:U2533 4.6 18.3 1.0 C2' 1:G2532 4.7 12.5 1.0 OP1 1:U2533 4.7 18.3 1.0 F14 1:ZC03001 4.8 7.5 1.0 C06 1:ZC03001 4.8 7.5 1.0 N16 1:ZC03001 4.8 7.5 1.0 O2' 1:U2533 4.9 18.3 1.0 C1' 1:C2479 5.0 9.7 1.0

A.Wright, K.Deane-Alder, E.Marschall, R.Bamert, H.Venugopal, T.Lithgow, D.Lupton, M.J.Belousoff. Cryoem Survey of Oxazolodinone Antibiotics in Complex with the 50S Subunit of the Methicillin Resistant Staphylococcus Aureus Ribosome To Be Published.