Fluorine in PDB 6ww6: Crystal Structure of Eutv Bound to Rna
Protein crystallography data
The structure of Crystal Structure of Eutv Bound to Rna, PDB code: 6ww6
was solved by
S.F.Ataide,
J.L.Walshe,
with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:
Resolution Low / High (Å)
|
47.19 /
3.80
|
Space group
|
I 41 3 2 1
|
Cell size a, b, c (Å), α, β, γ (°)
|
258.483,
258.483,
258.483,
90,
90,
90
|
R / Rfree (%)
|
23.3 /
24.1
|
Fluorine Binding Sites:
The binding sites of Fluorine atom in the Crystal Structure of Eutv Bound to Rna
(pdb code 6ww6). This binding sites where shown within
5.0 Angstroms radius around Fluorine atom.
In total 6 binding sites of Fluorine where determined in the
Crystal Structure of Eutv Bound to Rna, PDB code: 6ww6:
Jump to Fluorine binding site number:
1;
2;
3;
4;
5;
6;
Fluorine binding site 1 out
of 6 in 6ww6
Go back to
Fluorine Binding Sites List in 6ww6
Fluorine binding site 1 out
of 6 in the Crystal Structure of Eutv Bound to Rna
Mono view
Stereo pair view
|
A full contact list of Fluorine with other atoms in the F binding
site number 1 of Crystal Structure of Eutv Bound to Rna within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:F201
b:185.7
occ:1.00
|
F1
|
A:BEF201
|
0.0
|
185.7
|
1.0
|
BE
|
A:BEF201
|
1.5
|
179.4
|
1.0
|
F3
|
A:BEF201
|
2.4
|
177.8
|
1.0
|
NZ
|
A:LYS104
|
2.5
|
113.1
|
1.0
|
F2
|
A:BEF201
|
2.5
|
190.9
|
1.0
|
OD2
|
A:ASP54
|
2.5
|
126.4
|
1.0
|
CE
|
A:LYS104
|
3.6
|
109.9
|
1.0
|
OE2
|
A:GLU11
|
3.6
|
155.4
|
1.0
|
CG
|
A:ASP54
|
3.7
|
122.6
|
1.0
|
CD
|
A:LYS104
|
3.8
|
109.5
|
1.0
|
OE1
|
A:GLU11
|
3.8
|
148.1
|
1.0
|
CD
|
A:GLU11
|
4.0
|
151.7
|
1.0
|
OD1
|
A:ASP54
|
4.2
|
119.7
|
1.0
|
OD1
|
A:ASP9
|
4.4
|
141.1
|
1.0
|
OD2
|
A:ASP9
|
4.4
|
130.9
|
1.0
|
OD1
|
A:ASP10
|
4.7
|
147.9
|
1.0
|
CG
|
A:ASP9
|
4.9
|
136.0
|
1.0
|
CB
|
A:ASP54
|
4.9
|
120.5
|
1.0
|
OG
|
A:SER82
|
5.0
|
148.1
|
1.0
|
O
|
A:GLN56
|
5.0
|
161.4
|
1.0
|
|
Fluorine binding site 2 out
of 6 in 6ww6
Go back to
Fluorine Binding Sites List in 6ww6
Fluorine binding site 2 out
of 6 in the Crystal Structure of Eutv Bound to Rna
Mono view
Stereo pair view
|
A full contact list of Fluorine with other atoms in the F binding
site number 2 of Crystal Structure of Eutv Bound to Rna within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:F201
b:190.9
occ:1.00
|
F2
|
A:BEF201
|
0.0
|
190.9
|
1.0
|
BE
|
A:BEF201
|
1.6
|
179.4
|
1.0
|
OD2
|
A:ASP54
|
2.5
|
126.4
|
1.0
|
F1
|
A:BEF201
|
2.5
|
185.7
|
1.0
|
OD1
|
A:ASP54
|
2.6
|
119.7
|
1.0
|
F3
|
A:BEF201
|
2.6
|
177.8
|
1.0
|
OG
|
A:SER82
|
2.8
|
148.1
|
1.0
|
CG
|
A:ASP54
|
2.9
|
122.6
|
1.0
|
CB
|
A:GLN56
|
3.6
|
172.4
|
1.0
|
CB
|
A:SER82
|
3.9
|
140.5
|
1.0
|
N
|
A:GLN56
|
4.0
|
171.9
|
1.0
|
NZ
|
A:LYS104
|
4.1
|
113.1
|
1.0
|
N
|
A:ALA83
|
4.1
|
111.2
|
1.0
|
O
|
A:GLN56
|
4.2
|
161.4
|
1.0
|
CA
|
A:SER82
|
4.2
|
136.2
|
1.0
|
CA
|
A:GLN56
|
4.3
|
172.2
|
1.0
|
CB
|
A:ASP54
|
4.4
|
120.5
|
1.0
|
CD
|
A:LYS104
|
4.7
|
109.5
|
1.0
|
CE
|
A:LYS104
|
4.7
|
109.9
|
1.0
|
C
|
A:SER82
|
4.8
|
134.7
|
1.0
|
CG
|
A:GLN56
|
4.8
|
179.5
|
1.0
|
C
|
A:GLN56
|
4.8
|
167.6
|
1.0
|
N
|
A:ILE55
|
4.9
|
124.8
|
1.0
|
|
Fluorine binding site 3 out
of 6 in 6ww6
Go back to
Fluorine Binding Sites List in 6ww6
Fluorine binding site 3 out
of 6 in the Crystal Structure of Eutv Bound to Rna
Mono view
Stereo pair view
|
A full contact list of Fluorine with other atoms in the F binding
site number 3 of Crystal Structure of Eutv Bound to Rna within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:F201
b:177.8
occ:1.00
|
F3
|
A:BEF201
|
0.0
|
177.8
|
1.0
|
BE
|
A:BEF201
|
1.6
|
179.4
|
1.0
|
OD2
|
A:ASP54
|
2.4
|
126.4
|
1.0
|
F1
|
A:BEF201
|
2.4
|
185.7
|
1.0
|
O
|
A:GLN56
|
2.6
|
161.4
|
1.0
|
F2
|
A:BEF201
|
2.6
|
190.9
|
1.0
|
CG
|
A:ASP54
|
3.2
|
122.6
|
1.0
|
CB
|
A:GLN56
|
3.4
|
172.4
|
1.0
|
OD1
|
A:ASP10
|
3.5
|
147.9
|
1.0
|
C
|
A:GLN56
|
3.6
|
167.6
|
1.0
|
OD1
|
A:ASP54
|
3.7
|
119.7
|
1.0
|
OD2
|
A:ASP10
|
3.9
|
147.5
|
1.0
|
OD1
|
A:ASP9
|
3.9
|
141.1
|
1.0
|
CA
|
A:GLN56
|
4.0
|
172.2
|
1.0
|
CG
|
A:ASP10
|
4.0
|
146.4
|
1.0
|
NZ
|
A:LYS104
|
4.2
|
113.1
|
1.0
|
CB
|
A:ASP54
|
4.2
|
120.5
|
1.0
|
N
|
A:GLN56
|
4.3
|
171.9
|
1.0
|
OE2
|
A:GLU11
|
4.3
|
155.4
|
1.0
|
CG
|
A:GLN56
|
4.4
|
179.5
|
1.0
|
CD
|
A:GLU11
|
4.8
|
151.7
|
1.0
|
N
|
A:MET57
|
4.8
|
116.9
|
1.0
|
CG
|
A:ASP9
|
4.9
|
136.0
|
1.0
|
|
Fluorine binding site 4 out
of 6 in 6ww6
Go back to
Fluorine Binding Sites List in 6ww6
Fluorine binding site 4 out
of 6 in the Crystal Structure of Eutv Bound to Rna
Mono view
Stereo pair view
|
A full contact list of Fluorine with other atoms in the F binding
site number 4 of Crystal Structure of Eutv Bound to Rna within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:F201
b:142.5
occ:1.00
|
F1
|
B:BEF201
|
0.0
|
142.5
|
1.0
|
BE
|
B:BEF201
|
1.6
|
136.2
|
1.0
|
OD1
|
B:ASP54
|
2.4
|
140.6
|
1.0
|
F3
|
B:BEF201
|
2.4
|
134.7
|
1.0
|
F2
|
B:BEF201
|
2.6
|
147.8
|
1.0
|
CG
|
B:ASP54
|
2.8
|
134.0
|
1.0
|
OD2
|
B:ASP54
|
2.8
|
138.8
|
1.0
|
CD
|
B:LYS104
|
2.9
|
122.5
|
1.0
|
N
|
B:ALA83
|
3.0
|
121.5
|
1.0
|
NZ
|
B:LYS104
|
3.0
|
133.8
|
1.0
|
CE
|
B:LYS104
|
3.1
|
126.9
|
1.0
|
CA
|
B:SER82
|
3.2
|
104.7
|
1.0
|
OG
|
B:SER82
|
3.3
|
109.5
|
1.0
|
C
|
B:SER82
|
3.5
|
102.0
|
1.0
|
CB
|
B:SER82
|
3.8
|
104.4
|
1.0
|
CG
|
B:LYS104
|
4.0
|
112.8
|
1.0
|
O
|
B:LEU81
|
4.0
|
112.8
|
1.0
|
CA
|
B:ALA83
|
4.1
|
126.4
|
1.0
|
CB
|
B:ASP54
|
4.2
|
124.2
|
1.0
|
CB
|
B:ALA83
|
4.2
|
134.7
|
1.0
|
N
|
B:SER82
|
4.3
|
97.3
|
1.0
|
C
|
B:LEU81
|
4.6
|
104.7
|
1.0
|
CB
|
B:LYS104
|
4.6
|
115.9
|
1.0
|
O
|
B:SER82
|
4.7
|
99.8
|
1.0
|
N
|
B:TYR84
|
4.9
|
125.6
|
1.0
|
CA
|
B:ASP54
|
5.0
|
116.8
|
1.0
|
|
Fluorine binding site 5 out
of 6 in 6ww6
Go back to
Fluorine Binding Sites List in 6ww6
Fluorine binding site 5 out
of 6 in the Crystal Structure of Eutv Bound to Rna
Mono view
Stereo pair view
|
A full contact list of Fluorine with other atoms in the F binding
site number 5 of Crystal Structure of Eutv Bound to Rna within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:F201
b:147.8
occ:1.00
|
F2
|
B:BEF201
|
0.0
|
147.8
|
1.0
|
BE
|
B:BEF201
|
1.6
|
136.2
|
1.0
|
OD1
|
B:ASP54
|
2.4
|
140.6
|
1.0
|
F3
|
B:BEF201
|
2.5
|
134.7
|
1.0
|
F1
|
B:BEF201
|
2.6
|
142.5
|
1.0
|
NZ
|
B:LYS104
|
3.2
|
133.8
|
1.0
|
CG
|
B:ASP54
|
3.6
|
134.0
|
1.0
|
OE2
|
B:GLU11
|
3.6
|
171.4
|
1.0
|
OE1
|
B:GLU11
|
3.8
|
164.0
|
1.0
|
CD
|
B:GLU11
|
3.9
|
168.2
|
1.0
|
OD2
|
B:ASP54
|
4.1
|
138.8
|
1.0
|
OD1
|
B:ASP10
|
4.2
|
150.1
|
1.0
|
CE
|
B:LYS104
|
4.2
|
126.9
|
1.0
|
CD
|
B:LYS104
|
4.3
|
122.5
|
1.0
|
OD1
|
B:ASP9
|
4.5
|
160.0
|
1.0
|
OE1
|
B:GLN56
|
4.6
|
154.3
|
1.0
|
O
|
B:GLN56
|
4.7
|
143.4
|
1.0
|
CB
|
B:ASP54
|
4.8
|
124.2
|
1.0
|
CB
|
B:GLN56
|
4.9
|
150.8
|
1.0
|
|
Fluorine binding site 6 out
of 6 in 6ww6
Go back to
Fluorine Binding Sites List in 6ww6
Fluorine binding site 6 out
of 6 in the Crystal Structure of Eutv Bound to Rna
Mono view
Stereo pair view
|
A full contact list of Fluorine with other atoms in the F binding
site number 6 of Crystal Structure of Eutv Bound to Rna within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:F201
b:134.7
occ:1.00
|
F3
|
B:BEF201
|
0.0
|
134.7
|
1.0
|
BE
|
B:BEF201
|
1.6
|
136.2
|
1.0
|
F1
|
B:BEF201
|
2.4
|
142.5
|
1.0
|
F2
|
B:BEF201
|
2.5
|
147.8
|
1.0
|
OD1
|
B:ASP54
|
2.6
|
140.6
|
1.0
|
OD2
|
B:ASP54
|
2.7
|
138.8
|
1.0
|
CG
|
B:ASP54
|
3.0
|
134.0
|
1.0
|
OG
|
B:SER82
|
3.3
|
109.5
|
1.0
|
CB
|
B:GLN56
|
3.4
|
150.8
|
1.0
|
CE1
|
B:TYR84
|
3.5
|
153.3
|
1.0
|
CD1
|
B:TYR84
|
3.5
|
145.1
|
1.0
|
N
|
B:GLN56
|
3.8
|
142.4
|
1.0
|
CA
|
B:GLN56
|
4.1
|
147.9
|
1.0
|
OE1
|
B:GLN56
|
4.1
|
154.3
|
1.0
|
O
|
B:GLN56
|
4.2
|
143.4
|
1.0
|
N
|
B:ALA83
|
4.3
|
121.5
|
1.0
|
CB
|
B:SER82
|
4.4
|
104.4
|
1.0
|
CB
|
B:ASP54
|
4.6
|
124.2
|
1.0
|
CG
|
B:GLN56
|
4.6
|
153.9
|
1.0
|
CA
|
B:SER82
|
4.7
|
104.7
|
1.0
|
C
|
B:GLN56
|
4.7
|
146.4
|
1.0
|
NZ
|
B:LYS104
|
4.8
|
133.8
|
1.0
|
CZ
|
B:TYR84
|
4.8
|
159.5
|
1.0
|
CD
|
B:GLN56
|
4.8
|
154.3
|
1.0
|
N
|
B:ILE55
|
4.8
|
112.0
|
1.0
|
CG
|
B:TYR84
|
4.8
|
144.2
|
1.0
|
CB
|
B:ALA83
|
4.8
|
134.7
|
1.0
|
C
|
B:ILE55
|
4.9
|
123.5
|
1.0
|
N
|
B:TYR84
|
4.9
|
125.6
|
1.0
|
|
Reference:
S.F.Ataide,
J.L.Walshe.
One By One: Structural Characterisation of An Rna Bound Anti-Terminator Protein Reveals A Successive Binding Mode To Be Published.
Page generated: Fri Aug 2 03:52:34 2024
|