Fluorine in PDB 6ww6: Crystal Structure of Eutv Bound to Rna

The structure of Crystal Structure of Eutv Bound to Rna, PDB code: 6ww6 was solved by S.F.Ataide, J.L.Walshe, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	47.19 / 3.80
Space group	I 41 3 2 1
Cell size a, b, c (Å), α, β, γ (°)	258.483, 258.483, 258.483, 90, 90, 90
R / Rfree (%)	23.3 / 24.1

The binding sites of Fluorine atom in the Crystal Structure of Eutv Bound to Rna (pdb code 6ww6). This binding sites where shown within 5.0 Angstroms radius around Fluorine atom.
In total 6 binding sites of Fluorine where determined in the Crystal Structure of Eutv Bound to Rna, PDB code: 6ww6:
Jump to Fluorine binding site number: 1; 2; 3; 4; 5; 6;

Fluorine binding site 1 out of 6 in the Crystal Structure of Eutv Bound to Rna


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 1 of Crystal Structure of Eutv Bound to Rna within 5.0Å range: probe atom residue distance (Å) B Occ A:F201 b:185.7 occ:1.00 F1 A:BEF201 0.0 185.7 1.0 BE A:BEF201 1.5 179.4 1.0 F3 A:BEF201 2.4 177.8 1.0 NZ A:LYS104 2.5 113.1 1.0 F2 A:BEF201 2.5 190.9 1.0 OD2 A:ASP54 2.5 126.4 1.0 CE A:LYS104 3.6 109.9 1.0 OE2 A:GLU11 3.6 155.4 1.0 CG A:ASP54 3.7 122.6 1.0 CD A:LYS104 3.8 109.5 1.0 OE1 A:GLU11 3.8 148.1 1.0 CD A:GLU11 4.0 151.7 1.0 OD1 A:ASP54 4.2 119.7 1.0 OD1 A:ASP9 4.4 141.1 1.0 OD2 A:ASP9 4.4 130.9 1.0 OD1 A:ASP10 4.7 147.9 1.0 CG A:ASP9 4.9 136.0 1.0 CB A:ASP54 4.9 120.5 1.0 OG A:SER82 5.0 148.1 1.0 O A:GLN56 5.0 161.4 1.0

Fluorine binding site 2 out of 6 in the Crystal Structure of Eutv Bound to Rna


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 2 of Crystal Structure of Eutv Bound to Rna within 5.0Å range: probe atom residue distance (Å) B Occ A:F201 b:190.9 occ:1.00 F2 A:BEF201 0.0 190.9 1.0 BE A:BEF201 1.6 179.4 1.0 OD2 A:ASP54 2.5 126.4 1.0 F1 A:BEF201 2.5 185.7 1.0 OD1 A:ASP54 2.6 119.7 1.0 F3 A:BEF201 2.6 177.8 1.0 OG A:SER82 2.8 148.1 1.0 CG A:ASP54 2.9 122.6 1.0 CB A:GLN56 3.6 172.4 1.0 CB A:SER82 3.9 140.5 1.0 N A:GLN56 4.0 171.9 1.0 NZ A:LYS104 4.1 113.1 1.0 N A:ALA83 4.1 111.2 1.0 O A:GLN56 4.2 161.4 1.0 CA A:SER82 4.2 136.2 1.0 CA A:GLN56 4.3 172.2 1.0 CB A:ASP54 4.4 120.5 1.0 CD A:LYS104 4.7 109.5 1.0 CE A:LYS104 4.7 109.9 1.0 C A:SER82 4.8 134.7 1.0 CG A:GLN56 4.8 179.5 1.0 C A:GLN56 4.8 167.6 1.0 N A:ILE55 4.9 124.8 1.0

Fluorine binding site 3 out of 6 in the Crystal Structure of Eutv Bound to Rna


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 3 of Crystal Structure of Eutv Bound to Rna within 5.0Å range: probe atom residue distance (Å) B Occ A:F201 b:177.8 occ:1.00 F3 A:BEF201 0.0 177.8 1.0 BE A:BEF201 1.6 179.4 1.0 OD2 A:ASP54 2.4 126.4 1.0 F1 A:BEF201 2.4 185.7 1.0 O A:GLN56 2.6 161.4 1.0 F2 A:BEF201 2.6 190.9 1.0 CG A:ASP54 3.2 122.6 1.0 CB A:GLN56 3.4 172.4 1.0 OD1 A:ASP10 3.5 147.9 1.0 C A:GLN56 3.6 167.6 1.0 OD1 A:ASP54 3.7 119.7 1.0 OD2 A:ASP10 3.9 147.5 1.0 OD1 A:ASP9 3.9 141.1 1.0 CA A:GLN56 4.0 172.2 1.0 CG A:ASP10 4.0 146.4 1.0 NZ A:LYS104 4.2 113.1 1.0 CB A:ASP54 4.2 120.5 1.0 N A:GLN56 4.3 171.9 1.0 OE2 A:GLU11 4.3 155.4 1.0 CG A:GLN56 4.4 179.5 1.0 CD A:GLU11 4.8 151.7 1.0 N A:MET57 4.8 116.9 1.0 CG A:ASP9 4.9 136.0 1.0

Fluorine binding site 4 out of 6 in the Crystal Structure of Eutv Bound to Rna


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 4 of Crystal Structure of Eutv Bound to Rna within 5.0Å range: probe atom residue distance (Å) B Occ B:F201 b:142.5 occ:1.00 F1 B:BEF201 0.0 142.5 1.0 BE B:BEF201 1.6 136.2 1.0 OD1 B:ASP54 2.4 140.6 1.0 F3 B:BEF201 2.4 134.7 1.0 F2 B:BEF201 2.6 147.8 1.0 CG B:ASP54 2.8 134.0 1.0 OD2 B:ASP54 2.8 138.8 1.0 CD B:LYS104 2.9 122.5 1.0 N B:ALA83 3.0 121.5 1.0 NZ B:LYS104 3.0 133.8 1.0 CE B:LYS104 3.1 126.9 1.0 CA B:SER82 3.2 104.7 1.0 OG B:SER82 3.3 109.5 1.0 C B:SER82 3.5 102.0 1.0 CB B:SER82 3.8 104.4 1.0 CG B:LYS104 4.0 112.8 1.0 O B:LEU81 4.0 112.8 1.0 CA B:ALA83 4.1 126.4 1.0 CB B:ASP54 4.2 124.2 1.0 CB B:ALA83 4.2 134.7 1.0 N B:SER82 4.3 97.3 1.0 C B:LEU81 4.6 104.7 1.0 CB B:LYS104 4.6 115.9 1.0 O B:SER82 4.7 99.8 1.0 N B:TYR84 4.9 125.6 1.0 CA B:ASP54 5.0 116.8 1.0

Fluorine binding site 5 out of 6 in the Crystal Structure of Eutv Bound to Rna


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 5 of Crystal Structure of Eutv Bound to Rna within 5.0Å range: probe atom residue distance (Å) B Occ B:F201 b:147.8 occ:1.00 F2 B:BEF201 0.0 147.8 1.0 BE B:BEF201 1.6 136.2 1.0 OD1 B:ASP54 2.4 140.6 1.0 F3 B:BEF201 2.5 134.7 1.0 F1 B:BEF201 2.6 142.5 1.0 NZ B:LYS104 3.2 133.8 1.0 CG B:ASP54 3.6 134.0 1.0 OE2 B:GLU11 3.6 171.4 1.0 OE1 B:GLU11 3.8 164.0 1.0 CD B:GLU11 3.9 168.2 1.0 OD2 B:ASP54 4.1 138.8 1.0 OD1 B:ASP10 4.2 150.1 1.0 CE B:LYS104 4.2 126.9 1.0 CD B:LYS104 4.3 122.5 1.0 OD1 B:ASP9 4.5 160.0 1.0 OE1 B:GLN56 4.6 154.3 1.0 O B:GLN56 4.7 143.4 1.0 CB B:ASP54 4.8 124.2 1.0 CB B:GLN56 4.9 150.8 1.0

Fluorine binding site 6 out of 6 in the Crystal Structure of Eutv Bound to Rna


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 6 of Crystal Structure of Eutv Bound to Rna within 5.0Å range: probe atom residue distance (Å) B Occ B:F201 b:134.7 occ:1.00 F3 B:BEF201 0.0 134.7 1.0 BE B:BEF201 1.6 136.2 1.0 F1 B:BEF201 2.4 142.5 1.0 F2 B:BEF201 2.5 147.8 1.0 OD1 B:ASP54 2.6 140.6 1.0 OD2 B:ASP54 2.7 138.8 1.0 CG B:ASP54 3.0 134.0 1.0 OG B:SER82 3.3 109.5 1.0 CB B:GLN56 3.4 150.8 1.0 CE1 B:TYR84 3.5 153.3 1.0 CD1 B:TYR84 3.5 145.1 1.0 N B:GLN56 3.8 142.4 1.0 CA B:GLN56 4.1 147.9 1.0 OE1 B:GLN56 4.1 154.3 1.0 O B:GLN56 4.2 143.4 1.0 N B:ALA83 4.3 121.5 1.0 CB B:SER82 4.4 104.4 1.0 CB B:ASP54 4.6 124.2 1.0 CG B:GLN56 4.6 153.9 1.0 CA B:SER82 4.7 104.7 1.0 C B:GLN56 4.7 146.4 1.0 NZ B:LYS104 4.8 133.8 1.0 CZ B:TYR84 4.8 159.5 1.0 CD B:GLN56 4.8 154.3 1.0 N B:ILE55 4.8 112.0 1.0 CG B:TYR84 4.8 144.2 1.0 CB B:ALA83 4.8 134.7 1.0 C B:ILE55 4.9 123.5 1.0 N B:TYR84 4.9 125.6 1.0

S.F.Ataide, J.L.Walshe. One By One: Structural Characterisation of An Rna Bound Anti-Terminator Protein Reveals A Successive Binding Mode To Be Published.