Fluorine in PDB 6x2j: Structure of Human TRPA1 in Complex with Agonist GNE551

Other elements in 6x2j:

The structure of Structure of Human TRPA1 in Complex with Agonist GNE551 also contains other interesting chemical elements:

Bromine (Br) 4 atoms

Fluorine Binding Sites:

The binding sites of Fluorine atom in the Structure of Human TRPA1 in Complex with Agonist GNE551 (pdb code 6x2j). This binding sites where shown within 5.0 Angstroms radius around Fluorine atom.
In total 4 binding sites of Fluorine where determined in the Structure of Human TRPA1 in Complex with Agonist GNE551, PDB code: 6x2j:
Jump to Fluorine binding site number: 1; 2; 3; 4;

Fluorine binding site 1 out of 4 in 6x2j

Go back to Fluorine Binding Sites List in 6x2j
Fluorine binding site 1 out of 4 in the Structure of Human TRPA1 in Complex with Agonist GNE551


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 1 of Structure of Human TRPA1 in Complex with Agonist GNE551 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:F1101

b:75.4
occ:1.00
F24 A:ULJ1101 0.0 75.4 1.0
C23 A:ULJ1101 1.3 75.4 1.0
C18 A:ULJ1101 2.3 75.4 1.0
C22 A:ULJ1101 2.3 75.4 1.0
HB3 A:ALA939 2.4 89.4 1.0
H40 A:ULJ1101 2.6 75.4 1.0
H37 A:ULJ1101 2.6 75.4 1.0
HB2 A:ALA939 2.7 89.4 1.0
C17 A:ULJ1101 2.8 75.4 1.0
H36 A:ULJ1101 2.8 75.4 1.0
CB A:ALA939 3.0 89.4 1.0
O A:ALA939 3.1 89.4 1.0
C A:ALA939 3.2 89.4 1.0
HA A:GLN940 3.5 86.6 1.0
C21 A:ULJ1101 3.6 75.4 1.0
C19 A:ULJ1101 3.6 75.4 1.0
N A:GLN940 3.6 86.6 1.0
CA A:ALA939 3.7 89.4 1.0
HD13 A:LEU936 3.7 91.0 1.0
HG A:SER943 3.8 84.7 1.0
HB1 A:ALA939 3.9 89.4 1.0
C20 A:ULJ1101 4.1 75.4 1.0
CA A:GLN940 4.1 86.6 1.0
HB2 A:GLN940 4.1 86.6 1.0
H A:GLN940 4.1 86.6 1.0
N14 A:ULJ1101 4.2 75.4 1.0
OG A:SER943 4.2 84.7 1.0
O A:LEU936 4.3 91.0 1.0
HA A:ALA939 4.4 89.4 1.0
OE1 A:GLN940 4.4 86.6 1.0
H42 A:ULJ1101 4.5 75.4 1.0
H38 A:ULJ1101 4.5 75.4 1.0
HA A:LEU936 4.6 91.0 1.0
CB A:GLN940 4.7 86.6 1.0
HD11 A:LEU936 4.7 91.0 1.0
CD1 A:LEU936 4.7 91.0 1.0
HB2 A:SER943 4.8 84.7 1.0
N A:ALA939 4.8 89.4 1.0

Fluorine binding site 2 out of 4 in 6x2j

Go back to Fluorine Binding Sites List in 6x2j
Fluorine binding site 2 out of 4 in the Structure of Human TRPA1 in Complex with Agonist GNE551


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 2 of Structure of Human TRPA1 in Complex with Agonist GNE551 within 5.0Å range:
probe atom residue distance (Å) B Occ
B:F1101

b:76.5
occ:1.00
F24 B:ULJ1101 0.0 76.5 1.0
C23 B:ULJ1101 1.3 76.5 1.0
C18 B:ULJ1101 2.3 76.5 1.0
C22 B:ULJ1101 2.3 76.5 1.0
HB2 B:ALA939 2.4 89.4 1.0
H40 B:ULJ1101 2.6 76.5 1.0
H37 B:ULJ1101 2.6 76.5 1.0
HB3 B:ALA939 2.7 89.4 1.0
C17 B:ULJ1101 2.8 76.5 1.0
H36 B:ULJ1101 2.8 76.5 1.0
CB B:ALA939 3.0 89.4 1.0
O B:ALA939 3.1 89.4 1.0
C B:ALA939 3.3 89.4 1.0
HA B:GLN940 3.5 86.6 1.0
C21 B:ULJ1101 3.6 76.5 1.0
C19 B:ULJ1101 3.6 76.5 1.0
HG B:SER943 3.6 84.7 1.0
N B:GLN940 3.7 86.6 1.0
CA B:ALA939 3.7 89.4 1.0
HD13 B:LEU936 3.8 91.0 1.0
HB1 B:ALA939 3.9 89.4 1.0
OG B:SER943 4.0 84.7 1.0
C20 B:ULJ1101 4.1 76.5 1.0
CA B:GLN940 4.1 86.6 1.0
HB2 B:GLN940 4.2 86.6 1.0
N14 B:ULJ1101 4.2 76.5 1.0
H B:GLN940 4.2 86.6 1.0
HA B:ALA939 4.3 89.4 1.0
OE1 B:GLN940 4.4 86.6 1.0
O B:LEU936 4.4 91.0 1.0
H42 B:ULJ1101 4.4 76.5 1.0
H38 B:ULJ1101 4.5 76.5 1.0
HA B:LEU936 4.7 91.0 1.0
HB2 B:SER943 4.7 84.7 1.0
HD11 B:LEU936 4.7 91.0 1.0
CD1 B:LEU936 4.7 91.0 1.0
CB B:GLN940 4.7 86.6 1.0
N B:ALA939 4.9 89.4 1.0
CB B:SER943 5.0 84.7 1.0

Fluorine binding site 3 out of 4 in 6x2j

Go back to Fluorine Binding Sites List in 6x2j
Fluorine binding site 3 out of 4 in the Structure of Human TRPA1 in Complex with Agonist GNE551


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 3 of Structure of Human TRPA1 in Complex with Agonist GNE551 within 5.0Å range:
probe atom residue distance (Å) B Occ
C:F1101

b:78.9
occ:1.00
F24 C:ULJ1101 0.0 78.9 1.0
C23 C:ULJ1101 1.3 78.9 1.0
C22 C:ULJ1101 2.3 78.9 1.0
C18 C:ULJ1101 2.3 78.9 1.0
HB2 C:ALA939 2.5 89.4 1.0
H40 C:ULJ1101 2.6 78.9 1.0
HB3 C:ALA939 2.7 89.4 1.0
H37 C:ULJ1101 2.7 78.9 1.0
H36 C:ULJ1101 2.7 78.9 1.0
C17 C:ULJ1101 2.8 78.9 1.0
CB C:ALA939 3.0 89.4 1.0
O C:ALA939 3.0 89.4 1.0
C C:ALA939 3.1 89.4 1.0
N C:GLN940 3.5 86.6 1.0
HA C:GLN940 3.5 86.6 1.0
C21 C:ULJ1101 3.6 78.9 1.0
C19 C:ULJ1101 3.6 78.9 1.0
CA C:ALA939 3.6 89.4 1.0
HG C:SER943 3.7 84.7 1.0
HD13 C:LEU936 3.7 91.0 1.0
HB1 C:ALA939 3.9 89.4 1.0
H C:GLN940 4.0 86.6 1.0
CA C:GLN940 4.0 86.6 1.0
HB2 C:GLN940 4.0 86.6 1.0
C20 C:ULJ1101 4.1 78.9 1.0
HA C:ALA939 4.1 89.4 1.0
N14 C:ULJ1101 4.2 78.9 1.0
OE1 C:GLN940 4.2 86.6 1.0
O C:LEU936 4.3 91.0 1.0
OG C:SER943 4.3 84.7 1.0
H38 C:ULJ1101 4.5 78.9 1.0
H42 C:ULJ1101 4.6 78.9 1.0
CB C:GLN940 4.6 86.6 1.0
HA C:LEU936 4.6 91.0 1.0
HD11 C:LEU936 4.7 91.0 1.0
CD1 C:LEU936 4.7 91.0 1.0
N C:ALA939 4.8 89.4 1.0
HB3 C:SER943 4.8 84.7 1.0
H C:ALA939 4.8 89.4 1.0

Fluorine binding site 4 out of 4 in 6x2j

Go back to Fluorine Binding Sites List in 6x2j
Fluorine binding site 4 out of 4 in the Structure of Human TRPA1 in Complex with Agonist GNE551


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 4 of Structure of Human TRPA1 in Complex with Agonist GNE551 within 5.0Å range:
probe atom residue distance (Å) B Occ
D:F1101

b:78.2
occ:1.00
F24 D:ULJ1101 0.0 78.2 1.0
C23 D:ULJ1101 1.3 78.2 1.0
C18 D:ULJ1101 2.3 78.2 1.0
C22 D:ULJ1101 2.3 78.2 1.0
HB2 D:ALA939 2.4 89.4 1.0
H40 D:ULJ1101 2.6 78.2 1.0
HB3 D:ALA939 2.6 89.4 1.0
H37 D:ULJ1101 2.7 78.2 1.0
H36 D:ULJ1101 2.7 78.2 1.0
C17 D:ULJ1101 2.8 78.2 1.0
O D:ALA939 2.9 89.4 1.0
CB D:ALA939 2.9 89.4 1.0
C D:ALA939 3.0 89.4 1.0
HA D:GLN940 3.4 86.6 1.0
N D:GLN940 3.4 86.6 1.0
CA D:ALA939 3.5 89.4 1.0
C21 D:ULJ1101 3.6 78.2 1.0
C19 D:ULJ1101 3.6 78.2 1.0
HD12 D:LEU936 3.7 91.0 1.0
HG D:SER943 3.7 84.7 1.0
HB1 D:ALA939 3.9 89.4 1.0
CA D:GLN940 3.9 86.6 1.0
HB2 D:GLN940 3.9 86.6 1.0
H D:GLN940 3.9 86.6 1.0
C20 D:ULJ1101 4.1 78.2 1.0
O D:LEU936 4.1 91.0 1.0
N14 D:ULJ1101 4.2 78.2 1.0
HA D:ALA939 4.2 89.4 1.0
OE1 D:GLN940 4.2 86.6 1.0
OG D:SER943 4.4 84.7 1.0
HA D:LEU936 4.4 91.0 1.0
H38 D:ULJ1101 4.5 78.2 1.0
CB D:GLN940 4.5 86.6 1.0
H42 D:ULJ1101 4.5 78.2 1.0
CD1 D:LEU936 4.6 91.0 1.0
N D:ALA939 4.6 89.4 1.0
HD11 D:LEU936 4.6 91.0 1.0
H D:ALA939 4.8 89.4 1.0
CD D:GLN940 4.9 86.6 1.0
HG D:LEU936 4.9 91.0 1.0
HB3 D:SER943 4.9 84.7 1.0

Reference:

C.Liu, R.Reese, S.Vu, L.Rouge, S.D.Shields, S.Kakiuchi-Kiyota, H.Chen, K.Johnson, Y.P.Shi, T.Chernov-Rogan, D.M.Z.Greiner, P.B.Kohli, D.Hackos, B.Brillantes, C.Tam, T.Li, J.Wang, B.Safina, S.Magnuson, M.Volgraf, J.Payandeh, J.Zheng, A.Rohou, J.Chen. A Non-Covalent Ligand Reveals Biased Agonism of the TRPA1 Ion Channel. Neuron 2020.
ISSN: ISSN 0896-6273
PubMed: 33152265
DOI: 10.1016/J.NEURON.2020.10.014
Page generated: Sun Dec 13 13:33:27 2020

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