Fluorine in PDB 6xms: Structure of P5A-Atpase SPF1, ALF4-Bound Form

The structure of Structure of P5A-Atpase SPF1, ALF4-Bound Form also contains other interesting chemical elements:

Magnesium	(Mg)	1 atom
Aluminium	(Al)	1 atom

The binding sites of Fluorine atom in the Structure of P5A-Atpase SPF1, ALF4-Bound Form (pdb code 6xms). This binding sites where shown within 5.0 Angstroms radius around Fluorine atom.
In total 4 binding sites of Fluorine where determined in the Structure of P5A-Atpase SPF1, ALF4-Bound Form, PDB code: 6xms:
Jump to Fluorine binding site number: 1; 2; 3; 4;

Fluorine binding site 1 out of 4 in the Structure of P5A-Atpase SPF1, ALF4-Bound Form


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 1 of Structure of P5A-Atpase SPF1, ALF4-Bound Form within 5.0Å range: probe atom residue distance (Å) B Occ A:F1302 b:54.8 occ:1.00 F1 A:ALF1302 0.0 54.8 1.0 AL A:ALF1302 1.8 54.8 1.0 MG A:MG1301 1.9 53.5 1.0 OD2 A:ASP487 2.2 52.1 1.0 F3 A:ALF1302 2.5 54.8 1.0 F4 A:ALF1302 2.5 54.8 1.0 CG A:ASP487 3.0 52.1 1.0 OD1 A:ASP487 3.0 52.1 1.0 O A:THR489 3.2 55.3 1.0 F2 A:ALF1302 3.6 54.8 1.0 OD1 A:ASP816 3.8 59.7 1.0 C A:THR489 4.2 55.3 1.0 N A:THR489 4.3 55.3 1.0 CB A:THR489 4.3 55.3 1.0 CB A:ASP487 4.4 52.1 1.0 CA A:THR489 4.5 55.3 1.0 OD1 A:ASN819 4.7 61.8 1.0 CG A:ASP816 4.7 59.7 1.0 OD2 A:ASP816 4.8 59.7 1.0 CB A:ASN819 4.8 61.8 1.0 CG A:ASN819 4.8 61.8 1.0 N A:LYS488 5.0 51.2 1.0

Fluorine binding site 2 out of 4 in the Structure of P5A-Atpase SPF1, ALF4-Bound Form


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 2 of Structure of P5A-Atpase SPF1, ALF4-Bound Form within 5.0Å range: probe atom residue distance (Å) B Occ A:F1302 b:54.8 occ:1.00 F2 A:ALF1302 0.0 54.8 1.0 AL A:ALF1302 1.8 54.8 1.0 N A:GLY698 2.4 47.9 1.0 F4 A:ALF1302 2.5 54.8 1.0 F3 A:ALF1302 2.5 54.8 1.0 OD1 A:ASP487 3.1 52.1 1.0 CA A:GLY698 3.1 47.9 1.0 C A:THR697 3.2 48.1 1.0 OG1 A:THR697 3.3 48.1 1.0 CA A:THR697 3.5 48.1 1.0 F1 A:ALF1302 3.6 54.8 1.0 CB A:THR697 4.0 48.1 1.0 C A:GLY698 4.1 47.9 1.0 O A:THR697 4.2 48.1 1.0 CG A:ASP487 4.2 52.1 1.0 OD1 A:ASP699 4.2 51.2 1.0 NZ A:LYS797 4.2 55.9 1.0 N A:ASP699 4.3 51.2 1.0 OD2 A:ASP487 4.5 52.1 1.0 N A:THR697 4.8 48.1 1.0 O A:ILE696 4.8 46.4 1.0 N A:LYS488 4.9 51.2 1.0

Fluorine binding site 3 out of 4 in the Structure of P5A-Atpase SPF1, ALF4-Bound Form


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 3 of Structure of P5A-Atpase SPF1, ALF4-Bound Form within 5.0Å range: probe atom residue distance (Å) B Occ A:F1302 b:54.8 occ:1.00 F3 A:ALF1302 0.0 54.8 1.0 AL A:ALF1302 1.8 54.8 1.0 OD1 A:ASP487 2.3 52.1 1.0 F2 A:ALF1302 2.5 54.8 1.0 F1 A:ALF1302 2.5 54.8 1.0 NZ A:LYS797 2.7 55.9 1.0 CG A:ASP487 2.8 52.1 1.0 OD2 A:ASP487 2.9 52.1 1.0 F4 A:ALF1302 3.6 54.8 1.0 CB A:ASN819 3.8 61.8 1.0 MG A:MG1301 3.9 53.5 1.0 CE A:LYS797 4.0 55.9 1.0 CB A:ASP487 4.1 52.1 1.0 CG A:ASN819 4.2 61.8 1.0 OD2 A:ASP820 4.5 60.0 1.0 N A:GLY698 4.6 47.9 1.0 ND2 A:ASN819 4.7 61.8 1.0 O A:ILE696 4.7 46.4 1.0 OD1 A:ASN819 4.7 61.8 1.0 CG A:ASP820 4.8 60.0 1.0 CA A:THR697 4.8 48.1 1.0 C A:THR697 4.8 48.1 1.0 CA A:ASP487 5.0 52.1 1.0

Fluorine binding site 4 out of 4 in the Structure of P5A-Atpase SPF1, ALF4-Bound Form


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 4 of Structure of P5A-Atpase SPF1, ALF4-Bound Form within 5.0Å range: probe atom residue distance (Å) B Occ A:F1302 b:54.8 occ:1.00 F4 A:ALF1302 0.0 54.8 1.0 AL A:ALF1302 1.8 54.8 1.0 F2 A:ALF1302 2.5 54.8 1.0 F1 A:ALF1302 2.5 54.8 1.0 OG1 A:THR489 3.1 55.3 1.0 CB A:THR489 3.1 55.3 1.0 N A:THR489 3.5 55.3 1.0 F3 A:ALF1302 3.6 54.8 1.0 OD1 A:ASP487 3.7 52.1 1.0 OD1 A:ASP699 3.7 51.2 1.0 CA A:THR489 3.8 55.3 1.0 O A:THR489 4.0 55.3 1.0 OD2 A:ASP487 4.1 52.1 1.0 MG A:MG1301 4.1 53.5 1.0 OG1 A:THR697 4.3 48.1 1.0 CG A:ASP487 4.3 52.1 1.0 CG2 A:THR489 4.4 55.3 1.0 C A:THR489 4.4 55.3 1.0 N A:GLY698 4.5 47.9 1.0 C A:LYS488 4.7 51.2 1.0 N A:LYS488 4.8 51.2 1.0 CG A:ASP699 4.8 51.2 1.0 CB A:LYS488 5.0 51.2 1.0

M.J.Mckenna, S.I.Sim, A.Ordureau, L.Wei, J.W.Harper, S.Shao, E.Park. The Endoplasmic Reticulum P5A-Atpase Is A Transmembrane Helix Dislocase. Science V. 369 2020.
ISSN: ESSN 1095-9203
PubMed: 32973005
DOI: 10.1126/SCIENCE.ABC5809