Fluorine in PDB 6xmt: Structure of P5A-Atpase SPF1, BEF3-Bound Form

The structure of Structure of P5A-Atpase SPF1, BEF3-Bound Form also contains other interesting chemical elements:

Magnesium

(Mg)

1 atom

The binding sites of Fluorine atom in the Structure of P5A-Atpase SPF1, BEF3-Bound Form (pdb code 6xmt). This binding sites where shown within 5.0 Angstroms radius around Fluorine atom.
In total 3 binding sites of Fluorine where determined in the Structure of P5A-Atpase SPF1, BEF3-Bound Form, PDB code: 6xmt:
Jump to Fluorine binding site number: 1; 2; 3;

Fluorine binding site 1 out of 3 in the Structure of P5A-Atpase SPF1, BEF3-Bound Form


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 1 of Structure of P5A-Atpase SPF1, BEF3-Bound Form within 5.0Å range: probe atom residue distance (Å) B Occ A:F1301 b:10.2 occ:1.00 F1 A:BEF1301 0.0 10.2 1.0 BE A:BEF1301 1.5 10.2 1.0 MG A:MG1302 1.8 8.1 1.0 OD2 A:ASP487 1.9 11.3 1.0 OD1 A:ASP487 2.3 11.3 1.0 CG A:ASP487 2.4 11.3 1.0 F3 A:BEF1301 2.5 10.2 1.0 F2 A:BEF1301 2.6 10.2 1.0 O A:THR489 3.1 9.7 1.0 CB A:ASP487 3.8 11.3 1.0 OD1 A:ASP816 4.0 6.5 1.0 C A:THR489 4.2 9.7 1.0 OD1 A:ASN819 4.2 9.5 1.0 N A:THR489 4.3 9.7 1.0 OD2 A:ASP820 4.3 8.2 1.0 CA A:THR489 4.6 9.7 1.0 ND2 A:ASN819 4.6 9.5 1.0 CB A:THR489 4.6 9.7 1.0 N A:GLY817 4.7 6.5 1.0 N A:LYS488 4.7 10.0 1.0 NZ A:LYS797 4.8 10.1 1.0 CA A:GLY309 4.8 14.8 1.0 CG A:ASN819 4.9 9.5 1.0 CA A:ASP487 4.9 11.3 1.0 CA A:GLY817 4.9 6.5 1.0 CG A:ASP820 4.9 8.2 1.0 C A:ASP487 4.9 11.3 1.0

Fluorine binding site 2 out of 3 in the Structure of P5A-Atpase SPF1, BEF3-Bound Form


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 2 of Structure of P5A-Atpase SPF1, BEF3-Bound Form within 5.0Å range: probe atom residue distance (Å) B Occ A:F1301 b:10.2 occ:1.00 F2 A:BEF1301 0.0 10.2 1.0 BE A:BEF1301 1.6 10.2 1.0 OD1 A:ASP487 2.4 11.3 1.0 F3 A:BEF1301 2.5 10.2 1.0 F1 A:BEF1301 2.6 10.2 1.0 N A:THR489 3.2 9.7 1.0 CG A:ASP487 3.4 11.3 1.0 O A:GLY309 3.4 14.8 1.0 CB A:THR489 3.6 9.7 1.0 OG1 A:THR489 3.6 9.7 1.0 OD2 A:ASP487 3.7 11.3 1.0 OG1 A:THR697 3.7 18.1 1.0 N A:LYS488 3.8 10.0 1.0 CA A:THR489 3.9 9.7 1.0 O A:THR489 3.9 9.7 1.0 N A:GLY698 3.9 13.2 1.0 MG A:MG1302 4.0 8.1 1.0 C A:LYS488 4.2 10.0 1.0 C A:GLY309 4.2 14.8 1.0 CA A:GLY309 4.2 14.8 1.0 CA A:THR697 4.3 18.1 1.0 CA A:LYS488 4.3 10.0 1.0 C A:THR489 4.4 9.7 1.0 CB A:LYS488 4.4 10.0 1.0 CB A:THR697 4.5 18.1 1.0 C A:THR697 4.5 18.1 1.0 OD1 A:ASP699 4.6 14.2 1.0 CB A:ASP487 4.7 11.3 1.0 C A:ASP487 4.7 11.3 1.0 CA A:GLY698 4.8 13.2 1.0 CA A:ASP487 5.0 11.3 1.0

Fluorine binding site 3 out of 3 in the Structure of P5A-Atpase SPF1, BEF3-Bound Form


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 3 of Structure of P5A-Atpase SPF1, BEF3-Bound Form within 5.0Å range: probe atom residue distance (Å) B Occ A:F1301 b:10.2 occ:1.00 F3 A:BEF1301 0.0 10.2 1.0 BE A:BEF1301 1.5 10.2 1.0 OD1 A:ASP487 2.3 11.3 1.0 F2 A:BEF1301 2.5 10.2 1.0 F1 A:BEF1301 2.5 10.2 1.0 NZ A:LYS797 2.6 10.1 1.0 CG A:ASP487 3.1 11.3 1.0 ND2 A:ASN819 3.2 9.5 1.0 OD2 A:ASP487 3.6 11.3 1.0 CE A:LYS797 3.9 10.1 1.0 CG A:ASN819 4.0 9.5 1.0 OD1 A:ASN819 4.0 9.5 1.0 O A:ILE696 4.2 35.0 1.0 N A:GLY698 4.2 13.2 1.0 CB A:ASP487 4.2 11.3 1.0 CA A:THR697 4.3 18.1 1.0 MG A:MG1302 4.3 8.1 1.0 C A:THR697 4.3 18.1 1.0 OD2 A:ASP820 4.7 8.2 1.0 CA A:GLY309 4.8 14.8 1.0 O A:GLY309 4.9 14.8 1.0 CA A:ASP487 4.9 11.3 1.0 CA A:GLY698 4.9 13.2 1.0 N A:LYS488 5.0 10.0 1.0 O A:THR697 5.0 18.1 1.0

M.J.Mckenna, S.I.Sim, A.Ordureau, L.Wei, J.W.Harper, S.Shao, E.Park. The Endoplasmic Reticulum P5A-Atpase Is A Transmembrane Helix Dislocase. Science V. 369 2020.
ISSN: ESSN 1095-9203
PubMed: 32973005
DOI: 10.1126/SCIENCE.ABC5809