Fluorine in PDB 6xmu: Structure of P5A-Atpase SPF1, Endogenous Substrate-Bound

The structure of Structure of P5A-Atpase SPF1, Endogenous Substrate-Bound also contains other interesting chemical elements:

Magnesium

(Mg)

1 atom

The binding sites of Fluorine atom in the Structure of P5A-Atpase SPF1, Endogenous Substrate-Bound (pdb code 6xmu). This binding sites where shown within 5.0 Angstroms radius around Fluorine atom.
In total 3 binding sites of Fluorine where determined in the Structure of P5A-Atpase SPF1, Endogenous Substrate-Bound, PDB code: 6xmu:
Jump to Fluorine binding site number: 1; 2; 3;

Fluorine binding site 1 out of 3 in the Structure of P5A-Atpase SPF1, Endogenous Substrate-Bound


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 1 of Structure of P5A-Atpase SPF1, Endogenous Substrate-Bound within 5.0Å range: probe atom residue distance (Å) B Occ A:F1301 b:26.5 occ:1.00 F1 A:BEF1301 0.0 26.5 1.0 BE A:BEF1301 1.5 26.5 1.0 MG A:MG1302 2.0 23.0 1.0 OD2 A:ASP487 2.0 24.6 1.0 OD1 A:ASP487 2.3 24.6 1.0 CG A:ASP487 2.4 24.6 1.0 F3 A:BEF1301 2.5 26.5 1.0 F2 A:BEF1301 2.6 26.5 1.0 O A:THR489 3.1 23.5 1.0 CB A:ASP487 3.9 24.6 1.0 C A:THR489 4.2 23.5 1.0 OD1 A:ASP816 4.2 20.4 1.0 N A:THR489 4.2 23.5 1.0 OD1 A:ASN819 4.3 23.5 1.0 ND2 A:ASN819 4.4 23.5 1.0 CB A:THR489 4.5 23.5 1.0 CA A:THR489 4.5 23.5 1.0 OD2 A:ASP820 4.6 23.5 1.0 CA A:GLY309 4.6 24.5 1.0 N A:LYS488 4.7 21.8 1.0 NZ A:LYS797 4.7 24.1 1.0 CG A:ASN819 4.8 23.5 1.0 CA A:ASP487 4.9 24.6 1.0 N A:GLY817 4.9 20.6 1.0

Fluorine binding site 2 out of 3 in the Structure of P5A-Atpase SPF1, Endogenous Substrate-Bound


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 2 of Structure of P5A-Atpase SPF1, Endogenous Substrate-Bound within 5.0Å range: probe atom residue distance (Å) B Occ A:F1301 b:26.5 occ:1.00 F2 A:BEF1301 0.0 26.5 1.0 BE A:BEF1301 1.6 26.5 1.0 OD1 A:ASP487 2.4 24.6 1.0 F3 A:BEF1301 2.5 26.5 1.0 F1 A:BEF1301 2.6 26.5 1.0 N A:THR489 3.2 23.5 1.0 OG1 A:THR697 3.2 33.9 1.0 OG1 A:THR489 3.5 23.5 1.0 CG A:ASP487 3.5 24.6 1.0 O A:GLY309 3.6 24.5 1.0 CB A:THR489 3.6 23.5 1.0 N A:LYS488 3.8 21.8 1.0 N A:GLY698 3.8 27.5 1.0 OD2 A:ASP487 3.9 24.6 1.0 CA A:THR489 3.9 23.5 1.0 CA A:THR697 4.0 33.9 1.0 O A:THR489 4.1 23.5 1.0 CB A:THR697 4.1 33.9 1.0 C A:LYS488 4.2 21.8 1.0 MG A:MG1302 4.2 23.0 1.0 CA A:GLY309 4.2 24.5 1.0 CB A:LYS488 4.3 21.8 1.0 CA A:LYS488 4.3 21.8 1.0 C A:GLY309 4.4 24.5 1.0 C A:THR697 4.4 33.9 1.0 C A:THR489 4.5 23.5 1.0 OD2 A:ASP699 4.7 28.3 1.0 C A:ASP487 4.7 24.6 1.0 CA A:GLY698 4.7 27.5 1.0 CB A:ASP487 4.8 24.6 1.0 CA A:ASP487 4.9 24.6 1.0 O A:ILE696 5.0 47.6 1.0

Fluorine binding site 3 out of 3 in the Structure of P5A-Atpase SPF1, Endogenous Substrate-Bound


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 3 of Structure of P5A-Atpase SPF1, Endogenous Substrate-Bound within 5.0Å range: probe atom residue distance (Å) B Occ A:F1301 b:26.5 occ:1.00 F3 A:BEF1301 0.0 26.5 1.0 BE A:BEF1301 1.5 26.5 1.0 OD1 A:ASP487 2.2 24.6 1.0 F2 A:BEF1301 2.5 26.5 1.0 F1 A:BEF1301 2.5 26.5 1.0 NZ A:LYS797 2.6 24.1 1.0 CG A:ASP487 3.1 24.6 1.0 ND2 A:ASN819 3.4 23.5 1.0 OD2 A:ASP487 3.5 24.6 1.0 O A:ILE696 3.8 47.6 1.0 CE A:LYS797 3.9 24.1 1.0 CA A:THR697 3.9 33.9 1.0 N A:GLY698 4.0 27.5 1.0 C A:THR697 4.2 33.9 1.0 CB A:ASP487 4.2 24.6 1.0 CG A:ASN819 4.4 23.5 1.0 MG A:MG1302 4.4 23.0 1.0 OD1 A:ASN819 4.5 23.5 1.0 OG1 A:THR697 4.6 33.9 1.0 CA A:ASP487 4.7 24.6 1.0 C A:ILE696 4.7 47.6 1.0 OD2 A:ASP820 4.7 23.5 1.0 N A:THR697 4.7 33.9 1.0 N A:LYS488 4.7 21.8 1.0 CB A:THR697 4.8 33.9 1.0 CA A:GLY698 4.8 27.5 1.0 CA A:GLY309 4.9 24.5 1.0

M.J.Mckenna, S.I.Sim, A.Ordureau, L.Wei, J.W.Harper, S.Shao, E.Park. The Endoplasmic Reticulum P5A-Atpase Is A Transmembrane Helix Dislocase. Science V. 369 2020.
ISSN: ESSN 1095-9203
PubMed: 32973005
DOI: 10.1126/SCIENCE.ABC5809