Fluorine in PDB 6yea: Human Wtsting in Complex with 2',2'-Difluoro-3',3'-Cgamp
Protein crystallography data
The structure of Human Wtsting in Complex with 2',2'-Difluoro-3',3'-Cgamp, PDB code: 6yea
was solved by
E.Boura,
M.Smola,
with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:
Resolution Low / High (Å)
|
35.09 /
2.81
|
Space group
|
P 41 21 2
|
Cell size a, b, c (Å), α, β, γ (°)
|
110.948,
110.948,
35.586,
90,
90,
90
|
R / Rfree (%)
|
20.8 /
23.5
|
Fluorine Binding Sites:
The binding sites of Fluorine atom in the Human Wtsting in Complex with 2',2'-Difluoro-3',3'-Cgamp
(pdb code 6yea). This binding sites where shown within
5.0 Angstroms radius around Fluorine atom.
In total 2 binding sites of Fluorine where determined in the
Human Wtsting in Complex with 2',2'-Difluoro-3',3'-Cgamp, PDB code: 6yea:
Jump to Fluorine binding site number:
1;
2;
Fluorine binding site 1 out
of 2 in 6yea
Go back to
Fluorine Binding Sites List in 6yea
Fluorine binding site 1 out
of 2 in the Human Wtsting in Complex with 2',2'-Difluoro-3',3'-Cgamp
Mono view
Stereo pair view
|
A full contact list of Fluorine with other atoms in the F binding
site number 1 of Human Wtsting in Complex with 2',2'-Difluoro-3',3'-Cgamp within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:F401
b:39.8
occ:0.50
|
F6
|
A:OOE401
|
0.0
|
39.8
|
0.5
|
C16
|
A:OOE401
|
1.4
|
40.8
|
0.5
|
H16
|
A:OOE401
|
2.0
|
49.1
|
0.5
|
C15
|
A:OOE401
|
2.3
|
39.4
|
0.5
|
C17
|
A:OOE401
|
2.4
|
43.7
|
0.5
|
H17
|
A:OOE401
|
2.6
|
52.6
|
0.5
|
O7
|
A:OOE401
|
2.7
|
46.5
|
0.5
|
H18
|
A:OOE401
|
2.8
|
49.7
|
0.5
|
C18
|
A:OOE401
|
2.9
|
41.3
|
0.5
|
O5
|
A:OOE401
|
2.9
|
37.9
|
0.5
|
H15
|
A:OOE401
|
3.3
|
47.4
|
0.5
|
N6
|
A:OOE401
|
3.6
|
43.3
|
0.5
|
P
|
A:OOE401
|
3.9
|
37.3
|
0.5
|
O
|
A:OOE401
|
4.0
|
40.2
|
0.5
|
C11
|
A:OOE401
|
4.2
|
42.7
|
0.5
|
N5
|
A:OOE401
|
4.3
|
47.3
|
0.5
|
C19
|
A:OOE401
|
4.4
|
39.8
|
0.5
|
O3
|
A:OOE401
|
4.7
|
38.5
|
0.5
|
C14
|
A:OOE401
|
4.7
|
45.8
|
0.5
|
H191
|
A:OOE401
|
4.7
|
48.0
|
0.5
|
H192
|
A:OOE401
|
4.9
|
48.0
|
0.5
|
H14
|
A:OOE401
|
4.9
|
55.1
|
0.5
|
O
|
A:HOH502
|
5.0
|
28.8
|
1.0
|
|
Fluorine binding site 2 out
of 2 in 6yea
Go back to
Fluorine Binding Sites List in 6yea
Fluorine binding site 2 out
of 2 in the Human Wtsting in Complex with 2',2'-Difluoro-3',3'-Cgamp
Mono view
Stereo pair view
|
A full contact list of Fluorine with other atoms in the F binding
site number 2 of Human Wtsting in Complex with 2',2'-Difluoro-3',3'-Cgamp within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:F401
b:40.4
occ:0.50
|
F9
|
A:OOE401
|
0.0
|
40.4
|
0.5
|
C6
|
A:OOE401
|
1.4
|
42.4
|
0.5
|
H6
|
A:OOE401
|
2.0
|
51.0
|
0.5
|
C5
|
A:OOE401
|
2.3
|
39.5
|
0.5
|
C7
|
A:OOE401
|
2.4
|
44.1
|
0.5
|
H7
|
A:OOE401
|
2.6
|
53.1
|
0.5
|
O10
|
A:OOE401
|
2.7
|
43.5
|
0.5
|
H8
|
A:OOE401
|
2.8
|
47.1
|
0.5
|
C8
|
A:OOE401
|
2.9
|
39.1
|
0.5
|
O1
|
A:OOE401
|
2.9
|
37.9
|
0.5
|
CD
|
A:PRO264
|
3.0
|
33.2
|
1.0
|
H5
|
A:OOE401
|
3.3
|
47.6
|
0.5
|
CG
|
A:PRO264
|
3.3
|
35.8
|
1.0
|
CB
|
A:THR263
|
3.3
|
48.4
|
1.0
|
CD1
|
A:TYR163
|
3.4
|
36.3
|
1.0
|
N2
|
A:OOE401
|
3.6
|
44.2
|
0.5
|
CE1
|
A:TYR163
|
3.6
|
47.7
|
1.0
|
OG1
|
A:THR263
|
3.7
|
49.2
|
1.0
|
N
|
A:PRO264
|
3.9
|
34.9
|
1.0
|
P1
|
A:OOE401
|
3.9
|
37.1
|
0.5
|
O22
|
A:OOE401
|
4.0
|
39.2
|
0.5
|
C1
|
A:OOE401
|
4.2
|
42.8
|
0.5
|
N1
|
A:OOE401
|
4.2
|
47.1
|
0.5
|
CA
|
A:THR263
|
4.2
|
38.5
|
1.0
|
CG2
|
A:THR263
|
4.3
|
39.4
|
1.0
|
N
|
A:THR263
|
4.4
|
41.0
|
1.0
|
C9
|
A:OOE401
|
4.4
|
39.3
|
0.5
|
C
|
A:THR263
|
4.4
|
45.8
|
1.0
|
CG
|
A:TYR163
|
4.6
|
43.5
|
1.0
|
O4
|
A:OOE401
|
4.6
|
38.4
|
0.5
|
CB
|
A:PRO264
|
4.7
|
33.0
|
1.0
|
C4
|
A:OOE401
|
4.7
|
45.6
|
0.5
|
H92
|
A:OOE401
|
4.7
|
47.3
|
0.5
|
CA
|
A:PRO264
|
4.8
|
42.0
|
1.0
|
H91
|
A:OOE401
|
4.9
|
47.3
|
0.5
|
H4
|
A:OOE401
|
5.0
|
54.9
|
0.5
|
CZ
|
A:TYR163
|
5.0
|
45.0
|
1.0
|
CA
|
A:TYR163
|
5.0
|
31.5
|
1.0
|
|
Reference:
E.Boura,
M.Smola.
Human Wtsting in Complex with 2',2'-Difluoro-3',3'-Cgamp To Be Published.
Page generated: Sat Apr 3 15:04:50 2021
|