Fluorine in PDB 6z9p: Transcription Termination Intermediate Complex 1
Enzymatic activity of Transcription Termination Intermediate Complex 1
All present enzymatic activity of Transcription Termination Intermediate Complex 1:
2.7.7.6;
Other elements in 6z9p:
The structure of Transcription Termination Intermediate Complex 1 also contains other interesting chemical elements:
Fluorine Binding Sites:
Pages:
>>> Page 1 <<<
Page 2, Binding sites: 11 -
15;
Binding sites:
The binding sites of Fluorine atom in the Transcription Termination Intermediate Complex 1
(pdb code 6z9p). This binding sites where shown within
5.0 Angstroms radius around Fluorine atom.
In total 15 binding sites of Fluorine where determined in the
Transcription Termination Intermediate Complex 1, PDB code: 6z9p:
Jump to Fluorine binding site number:
1;
2;
3;
4;
5;
6;
7;
8;
9;
10;
Fluorine binding site 1 out
of 15 in 6z9p
Go back to
Fluorine Binding Sites List in 6z9p
Fluorine binding site 1 out
of 15 in the Transcription Termination Intermediate Complex 1
Mono view
Stereo pair view
|
A full contact list of Fluorine with other atoms in the F binding
site number 1 of Transcription Termination Intermediate Complex 1 within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
a:F501
b:0.5
occ:1.00
|
F1
|
a:BEF501
|
0.0
|
0.5
|
1.0
|
BE
|
a:BEF501
|
1.5
|
0.5
|
1.0
|
NH1
|
a:ARG366
|
2.3
|
0.7
|
1.0
|
F3
|
a:BEF501
|
2.5
|
0.5
|
1.0
|
F2
|
a:BEF501
|
2.6
|
0.5
|
1.0
|
O2B
|
b:ADP1000
|
2.7
|
0.9
|
1.0
|
NH2
|
a:ARG366
|
3.0
|
0.7
|
1.0
|
CZ
|
a:ARG366
|
3.1
|
0.7
|
1.0
|
N
|
b:LYS181
|
3.4
|
0.9
|
1.0
|
CB
|
b:PRO180
|
3.4
|
0.2
|
1.0
|
CA
|
b:PRO180
|
3.5
|
0.2
|
1.0
|
C
|
b:PRO180
|
3.9
|
0.2
|
1.0
|
PB
|
b:ADP1000
|
4.1
|
0.9
|
1.0
|
NE
|
a:ARG366
|
4.4
|
0.7
|
1.0
|
CA
|
b:LYS181
|
4.4
|
0.9
|
1.0
|
CG
|
b:PRO180
|
4.5
|
0.2
|
1.0
|
MG
|
b:MG1001
|
4.7
|
0.5
|
1.0
|
O3B
|
b:ADP1000
|
4.7
|
0.9
|
1.0
|
O
|
b:HOH1101
|
4.8
|
0.7
|
1.0
|
N
|
b:PRO180
|
4.8
|
0.2
|
1.0
|
NH1
|
b:ARG212
|
5.0
|
0.7
|
1.0
|
|
Fluorine binding site 2 out
of 15 in 6z9p
Go back to
Fluorine Binding Sites List in 6z9p
Fluorine binding site 2 out
of 15 in the Transcription Termination Intermediate Complex 1
Mono view
Stereo pair view
|
A full contact list of Fluorine with other atoms in the F binding
site number 2 of Transcription Termination Intermediate Complex 1 within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
a:F501
b:0.5
occ:1.00
|
F2
|
a:BEF501
|
0.0
|
0.5
|
1.0
|
BE
|
a:BEF501
|
1.6
|
0.5
|
1.0
|
F3
|
a:BEF501
|
2.5
|
0.5
|
1.0
|
F1
|
a:BEF501
|
2.6
|
0.5
|
1.0
|
CD1
|
b:LEU320
|
3.4
|
0.3
|
1.0
|
O2B
|
b:ADP1000
|
3.5
|
0.9
|
1.0
|
NZ
|
b:LYS184
|
3.6
|
0.1
|
1.0
|
CA
|
b:PRO180
|
3.6
|
0.2
|
1.0
|
O
|
b:HOH1102
|
3.7
|
0.6
|
1.0
|
CE
|
b:LYS184
|
4.0
|
0.1
|
1.0
|
CB
|
b:PRO180
|
4.0
|
0.2
|
1.0
|
CG
|
b:LEU320
|
4.0
|
0.3
|
1.0
|
CD2
|
b:LEU320
|
4.0
|
0.3
|
1.0
|
N
|
b:PRO180
|
4.3
|
0.2
|
1.0
|
PB
|
b:ADP1000
|
4.4
|
0.9
|
1.0
|
CG
|
b:PRO180
|
4.4
|
0.2
|
1.0
|
MG
|
b:MG1001
|
4.5
|
0.5
|
1.0
|
O
|
b:PRO179
|
4.5
|
0.9
|
1.0
|
N
|
b:LYS181
|
4.6
|
0.9
|
1.0
|
O3B
|
b:ADP1000
|
4.6
|
0.9
|
1.0
|
NH1
|
a:ARG366
|
4.7
|
0.7
|
1.0
|
C
|
b:PRO180
|
4.7
|
0.2
|
1.0
|
O1B
|
b:ADP1000
|
4.7
|
0.9
|
1.0
|
C
|
b:PRO179
|
4.8
|
0.9
|
1.0
|
O
|
b:HOH1103
|
4.9
|
0.1
|
1.0
|
CD
|
b:PRO180
|
5.0
|
0.2
|
1.0
|
|
Fluorine binding site 3 out
of 15 in 6z9p
Go back to
Fluorine Binding Sites List in 6z9p
Fluorine binding site 3 out
of 15 in the Transcription Termination Intermediate Complex 1
Mono view
Stereo pair view
|
A full contact list of Fluorine with other atoms in the F binding
site number 3 of Transcription Termination Intermediate Complex 1 within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
a:F501
b:0.5
occ:1.00
|
F3
|
a:BEF501
|
0.0
|
0.5
|
1.0
|
BE
|
a:BEF501
|
1.5
|
0.5
|
1.0
|
F2
|
a:BEF501
|
2.5
|
0.5
|
1.0
|
F1
|
a:BEF501
|
2.5
|
0.5
|
1.0
|
MG
|
b:MG1001
|
2.6
|
0.5
|
1.0
|
O
|
b:HOH1103
|
2.8
|
0.1
|
1.0
|
O
|
b:HOH1102
|
2.8
|
0.6
|
1.0
|
O2B
|
b:ADP1000
|
3.2
|
0.9
|
1.0
|
O
|
b:HOH1101
|
3.4
|
0.7
|
1.0
|
NH2
|
a:ARG366
|
3.4
|
0.7
|
1.0
|
O3B
|
b:ADP1000
|
3.6
|
0.9
|
1.0
|
NH1
|
a:ARG366
|
3.7
|
0.7
|
1.0
|
CZ
|
a:ARG366
|
3.8
|
0.7
|
1.0
|
PB
|
b:ADP1000
|
3.9
|
0.9
|
1.0
|
NH1
|
b:ARG212
|
4.1
|
0.7
|
1.0
|
O1A
|
b:ADP1000
|
4.7
|
0.9
|
1.0
|
OG1
|
b:THR185
|
4.9
|
0.5
|
1.0
|
NE
|
a:ARG366
|
4.9
|
0.7
|
1.0
|
O1B
|
b:ADP1000
|
4.9
|
0.9
|
1.0
|
|
Fluorine binding site 4 out
of 15 in 6z9p
Go back to
Fluorine Binding Sites List in 6z9p
Fluorine binding site 4 out
of 15 in the Transcription Termination Intermediate Complex 1
Mono view
Stereo pair view
|
A full contact list of Fluorine with other atoms in the F binding
site number 4 of Transcription Termination Intermediate Complex 1 within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
b:F1002
b:0.4
occ:1.00
|
F1
|
b:BEF1002
|
0.0
|
0.4
|
1.0
|
BE
|
b:BEF1002
|
1.5
|
0.4
|
1.0
|
NH1
|
b:ARG366
|
2.3
|
0.7
|
1.0
|
F3
|
b:BEF1002
|
2.5
|
0.4
|
1.0
|
F2
|
b:BEF1002
|
2.6
|
0.4
|
1.0
|
N
|
c:LYS181
|
2.8
|
0.9
|
1.0
|
O3B
|
c:ADP1000
|
3.0
|
0.6
|
1.0
|
CZ
|
b:ARG366
|
3.1
|
0.7
|
1.0
|
NH2
|
b:ARG366
|
3.1
|
0.7
|
1.0
|
CA
|
c:PRO180
|
3.3
|
0.0
|
1.0
|
CB
|
c:PRO180
|
3.5
|
0.0
|
1.0
|
C
|
c:PRO180
|
3.5
|
0.0
|
1.0
|
CA
|
c:LYS181
|
3.8
|
0.9
|
1.0
|
PB
|
c:ADP1000
|
4.2
|
0.6
|
1.0
|
MG
|
c:MG1001
|
4.3
|
0.1
|
1.0
|
O3A
|
c:ADP1000
|
4.3
|
0.6
|
1.0
|
NE
|
b:ARG366
|
4.4
|
0.7
|
1.0
|
CB
|
c:LYS181
|
4.6
|
0.9
|
1.0
|
O2B
|
c:ADP1000
|
4.6
|
0.6
|
1.0
|
N
|
c:PRO180
|
4.7
|
0.0
|
1.0
|
O
|
c:PRO180
|
4.7
|
0.0
|
1.0
|
CG
|
c:PRO180
|
4.7
|
0.0
|
1.0
|
O
|
c:HOH1101
|
4.8
|
0.8
|
1.0
|
C
|
c:LYS181
|
5.0
|
0.9
|
1.0
|
|
Fluorine binding site 5 out
of 15 in 6z9p
Go back to
Fluorine Binding Sites List in 6z9p
Fluorine binding site 5 out
of 15 in the Transcription Termination Intermediate Complex 1
Mono view
Stereo pair view
|
A full contact list of Fluorine with other atoms in the F binding
site number 5 of Transcription Termination Intermediate Complex 1 within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
b:F1002
b:0.4
occ:1.00
|
F2
|
b:BEF1002
|
0.0
|
0.4
|
1.0
|
BE
|
b:BEF1002
|
1.6
|
0.4
|
1.0
|
F3
|
b:BEF1002
|
2.5
|
0.4
|
1.0
|
F1
|
b:BEF1002
|
2.6
|
0.4
|
1.0
|
CA
|
c:PRO180
|
3.3
|
0.0
|
1.0
|
NZ
|
c:LYS184
|
3.5
|
0.2
|
1.0
|
O3B
|
c:ADP1000
|
3.6
|
0.6
|
1.0
|
CB
|
c:PRO180
|
3.8
|
0.0
|
1.0
|
CD1
|
c:LEU320
|
3.8
|
0.8
|
1.0
|
O
|
c:HOH1102
|
4.0
|
0.1
|
1.0
|
CE
|
c:LYS184
|
4.0
|
0.2
|
1.0
|
N
|
c:PRO180
|
4.1
|
0.0
|
1.0
|
N
|
c:LYS181
|
4.2
|
0.9
|
1.0
|
CD2
|
c:LEU320
|
4.2
|
0.8
|
1.0
|
CG
|
c:LEU320
|
4.2
|
0.8
|
1.0
|
CG
|
c:PRO180
|
4.3
|
0.0
|
1.0
|
NH1
|
b:ARG366
|
4.3
|
0.7
|
1.0
|
MG
|
c:MG1001
|
4.3
|
0.1
|
1.0
|
O
|
c:PRO179
|
4.3
|
0.3
|
1.0
|
C
|
c:PRO180
|
4.3
|
0.0
|
1.0
|
C
|
c:PRO179
|
4.6
|
0.3
|
1.0
|
PB
|
c:ADP1000
|
4.8
|
0.6
|
1.0
|
O2B
|
c:ADP1000
|
4.8
|
0.6
|
1.0
|
CD
|
c:PRO180
|
4.9
|
0.0
|
1.0
|
|
Fluorine binding site 6 out
of 15 in 6z9p
Go back to
Fluorine Binding Sites List in 6z9p
Fluorine binding site 6 out
of 15 in the Transcription Termination Intermediate Complex 1
Mono view
Stereo pair view
|
A full contact list of Fluorine with other atoms in the F binding
site number 6 of Transcription Termination Intermediate Complex 1 within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
b:F1002
b:0.4
occ:1.00
|
F3
|
b:BEF1002
|
0.0
|
0.4
|
1.0
|
BE
|
b:BEF1002
|
1.5
|
0.4
|
1.0
|
MG
|
c:MG1001
|
2.2
|
0.1
|
1.0
|
F2
|
b:BEF1002
|
2.5
|
0.4
|
1.0
|
F1
|
b:BEF1002
|
2.5
|
0.4
|
1.0
|
O
|
c:HOH1103
|
2.9
|
0.2
|
1.0
|
O
|
c:HOH1102
|
2.9
|
0.1
|
1.0
|
NH2
|
b:ARG366
|
3.1
|
0.7
|
1.0
|
NH1
|
b:ARG366
|
3.3
|
0.7
|
1.0
|
O
|
c:HOH1101
|
3.3
|
0.8
|
1.0
|
O3B
|
c:ADP1000
|
3.4
|
0.6
|
1.0
|
O2B
|
c:ADP1000
|
3.5
|
0.6
|
1.0
|
CZ
|
b:ARG366
|
3.5
|
0.7
|
1.0
|
PB
|
c:ADP1000
|
3.9
|
0.6
|
1.0
|
NH1
|
c:ARG212
|
4.4
|
0.9
|
1.0
|
O3A
|
c:ADP1000
|
4.5
|
0.6
|
1.0
|
OG1
|
c:THR185
|
4.6
|
0.5
|
1.0
|
NE
|
b:ARG366
|
4.7
|
0.7
|
1.0
|
NZ
|
c:LYS184
|
4.8
|
0.2
|
1.0
|
N
|
c:LYS181
|
4.9
|
0.9
|
1.0
|
O2A
|
c:ADP1000
|
4.9
|
0.6
|
1.0
|
CE
|
c:LYS184
|
4.9
|
0.2
|
1.0
|
|
Fluorine binding site 7 out
of 15 in 6z9p
Go back to
Fluorine Binding Sites List in 6z9p
Fluorine binding site 7 out
of 15 in the Transcription Termination Intermediate Complex 1
Mono view
Stereo pair view
|
A full contact list of Fluorine with other atoms in the F binding
site number 7 of Transcription Termination Intermediate Complex 1 within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
c:F1002
b:0.1
occ:1.00
|
F1
|
c:BEF1002
|
0.0
|
0.1
|
1.0
|
BE
|
c:BEF1002
|
1.5
|
0.1
|
1.0
|
NH1
|
c:ARG366
|
2.3
|
0.4
|
1.0
|
F3
|
c:BEF1002
|
2.5
|
0.1
|
1.0
|
F2
|
c:BEF1002
|
2.6
|
0.1
|
1.0
|
CZ
|
c:ARG366
|
3.3
|
0.4
|
1.0
|
O3B
|
d:ADP1000
|
3.6
|
0.2
|
1.0
|
NH2
|
c:ARG366
|
3.6
|
0.4
|
1.0
|
CB
|
d:PRO180
|
3.8
|
0.3
|
1.0
|
CA
|
d:PRO180
|
4.0
|
0.3
|
1.0
|
N
|
d:LYS181
|
4.1
|
0.3
|
1.0
|
NE
|
c:ARG366
|
4.4
|
0.4
|
1.0
|
O
|
d:HOH1101
|
4.4
|
0.1
|
1.0
|
NH1
|
d:ARG212
|
4.4
|
0.3
|
1.0
|
O2B
|
d:ADP1000
|
4.5
|
0.2
|
1.0
|
PB
|
d:ADP1000
|
4.6
|
0.2
|
1.0
|
C
|
d:PRO180
|
4.6
|
0.3
|
1.0
|
CG
|
d:PRO180
|
4.8
|
0.3
|
1.0
|
NH2
|
d:ARG212
|
4.9
|
0.3
|
1.0
|
MG
|
d:MG1001
|
4.9
|
0.0
|
1.0
|
|
Fluorine binding site 8 out
of 15 in 6z9p
Go back to
Fluorine Binding Sites List in 6z9p
Fluorine binding site 8 out
of 15 in the Transcription Termination Intermediate Complex 1
Mono view
Stereo pair view
|
A full contact list of Fluorine with other atoms in the F binding
site number 8 of Transcription Termination Intermediate Complex 1 within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
c:F1002
b:0.1
occ:1.00
|
F2
|
c:BEF1002
|
0.0
|
0.1
|
1.0
|
BE
|
c:BEF1002
|
1.6
|
0.1
|
1.0
|
F3
|
c:BEF1002
|
2.5
|
0.1
|
1.0
|
F1
|
c:BEF1002
|
2.6
|
0.1
|
1.0
|
O3B
|
d:ADP1000
|
2.9
|
0.2
|
1.0
|
NZ
|
d:LYS184
|
3.4
|
0.4
|
1.0
|
CA
|
d:PRO180
|
3.5
|
0.3
|
1.0
|
CD1
|
d:LEU320
|
3.5
|
0.0
|
1.0
|
CE
|
d:LYS184
|
3.8
|
0.4
|
1.0
|
CB
|
d:PRO180
|
3.9
|
0.3
|
1.0
|
O
|
d:HOH1102
|
3.9
|
0.3
|
1.0
|
CG
|
d:LEU320
|
4.0
|
0.0
|
1.0
|
PB
|
d:ADP1000
|
4.0
|
0.2
|
1.0
|
CD2
|
d:LEU320
|
4.0
|
0.0
|
1.0
|
O2B
|
d:ADP1000
|
4.0
|
0.2
|
1.0
|
N
|
d:PRO180
|
4.1
|
0.3
|
1.0
|
CG
|
d:PRO180
|
4.3
|
0.3
|
1.0
|
O
|
d:PRO179
|
4.3
|
0.5
|
1.0
|
N
|
d:LYS181
|
4.4
|
0.3
|
1.0
|
C
|
d:PRO180
|
4.5
|
0.3
|
1.0
|
C
|
d:PRO179
|
4.5
|
0.5
|
1.0
|
MG
|
d:MG1001
|
4.6
|
0.0
|
1.0
|
NH1
|
c:ARG366
|
4.8
|
0.4
|
1.0
|
CD
|
d:PRO180
|
4.8
|
0.3
|
1.0
|
O1B
|
d:ADP1000
|
4.9
|
0.2
|
1.0
|
|
Fluorine binding site 9 out
of 15 in 6z9p
Go back to
Fluorine Binding Sites List in 6z9p
Fluorine binding site 9 out
of 15 in the Transcription Termination Intermediate Complex 1
Mono view
Stereo pair view
|
A full contact list of Fluorine with other atoms in the F binding
site number 9 of Transcription Termination Intermediate Complex 1 within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
c:F1002
b:0.1
occ:1.00
|
F3
|
c:BEF1002
|
0.0
|
0.1
|
1.0
|
BE
|
c:BEF1002
|
1.5
|
0.1
|
1.0
|
F2
|
c:BEF1002
|
2.5
|
0.1
|
1.0
|
F1
|
c:BEF1002
|
2.5
|
0.1
|
1.0
|
MG
|
d:MG1001
|
2.6
|
0.0
|
1.0
|
O
|
d:HOH1102
|
2.8
|
0.3
|
1.0
|
O
|
d:HOH1103
|
2.9
|
0.2
|
1.0
|
O
|
d:HOH1101
|
2.9
|
0.1
|
1.0
|
O2B
|
d:ADP1000
|
3.0
|
0.2
|
1.0
|
O3B
|
d:ADP1000
|
3.5
|
0.2
|
1.0
|
PB
|
d:ADP1000
|
3.8
|
0.2
|
1.0
|
NH1
|
c:ARG366
|
4.0
|
0.4
|
1.0
|
NH2
|
c:ARG366
|
4.1
|
0.4
|
1.0
|
CZ
|
c:ARG366
|
4.3
|
0.4
|
1.0
|
NH1
|
d:ARG212
|
4.5
|
0.3
|
1.0
|
O3A
|
d:ADP1000
|
4.7
|
0.2
|
1.0
|
CE
|
d:LYS184
|
4.7
|
0.4
|
1.0
|
O2A
|
d:ADP1000
|
4.7
|
0.2
|
1.0
|
NZ
|
d:LYS184
|
4.7
|
0.4
|
1.0
|
OG1
|
d:THR185
|
4.8
|
0.5
|
1.0
|
OD1
|
d:ASP265
|
4.8
|
0.7
|
1.0
|
|
Fluorine binding site 10 out
of 15 in 6z9p
Go back to
Fluorine Binding Sites List in 6z9p
Fluorine binding site 10 out
of 15 in the Transcription Termination Intermediate Complex 1
Mono view
Stereo pair view
|
A full contact list of Fluorine with other atoms in the F binding
site number 10 of Transcription Termination Intermediate Complex 1 within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
e:F503
b:0.0
occ:1.00
|
F1
|
e:BEF503
|
0.0
|
0.0
|
1.0
|
BE
|
e:BEF503
|
1.5
|
0.0
|
1.0
|
NH1
|
d:ARG366
|
2.3
|
0.2
|
1.0
|
O2B
|
e:ADP501
|
2.5
|
0.2
|
1.0
|
F3
|
e:BEF503
|
2.5
|
0.0
|
1.0
|
F2
|
e:BEF503
|
2.6
|
0.0
|
1.0
|
N
|
e:LYS181
|
3.0
|
0.8
|
1.0
|
CB
|
e:PRO180
|
3.2
|
0.0
|
1.0
|
CA
|
e:PRO180
|
3.3
|
0.0
|
1.0
|
CZ
|
d:ARG366
|
3.4
|
0.2
|
1.0
|
NH2
|
d:ARG366
|
3.6
|
0.2
|
1.0
|
C
|
e:PRO180
|
3.6
|
0.0
|
1.0
|
PB
|
e:ADP501
|
3.7
|
0.2
|
1.0
|
CA
|
e:LYS181
|
4.1
|
0.8
|
1.0
|
O3B
|
e:ADP501
|
4.2
|
0.2
|
1.0
|
CG
|
e:PRO180
|
4.4
|
0.0
|
1.0
|
MG
|
e:MG502
|
4.5
|
0.7
|
1.0
|
O1B
|
e:ADP501
|
4.5
|
0.2
|
1.0
|
NE
|
d:ARG366
|
4.6
|
0.2
|
1.0
|
N
|
e:PRO180
|
4.6
|
0.0
|
1.0
|
O2A
|
e:ADP501
|
4.7
|
0.2
|
1.0
|
CB
|
e:LYS181
|
4.8
|
0.8
|
1.0
|
O
|
e:PRO180
|
4.8
|
0.0
|
1.0
|
O3A
|
e:ADP501
|
4.9
|
0.2
|
1.0
|
|
Reference:
N.Said,
T.Hilal,
B.Loll,
M.C.Wahl.
Snapshots Along A Factor-Mediated, Elongation Complex-Dependent Path to Transcription Termination To Be Published.
Page generated: Fri Aug 2 05:02:21 2024
|