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Fluorine in PDB 6z9p: Transcription Termination Intermediate Complex 1

Enzymatic activity of Transcription Termination Intermediate Complex 1

All present enzymatic activity of Transcription Termination Intermediate Complex 1:
2.7.7.6;

Other elements in 6z9p:

The structure of Transcription Termination Intermediate Complex 1 also contains other interesting chemical elements:

Magnesium (Mg) 6 atoms
Zinc (Zn) 2 atoms

Fluorine Binding Sites:

Pages:

>>> Page 1 <<< Page 2, Binding sites: 11 - 15;

Binding sites:

The binding sites of Fluorine atom in the Transcription Termination Intermediate Complex 1 (pdb code 6z9p). This binding sites where shown within 5.0 Angstroms radius around Fluorine atom.
In total 15 binding sites of Fluorine where determined in the Transcription Termination Intermediate Complex 1, PDB code: 6z9p:
Jump to Fluorine binding site number: 1; 2; 3; 4; 5; 6; 7; 8; 9; 10;

Fluorine binding site 1 out of 15 in 6z9p

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Fluorine binding site 1 out of 15 in the Transcription Termination Intermediate Complex 1


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 1 of Transcription Termination Intermediate Complex 1 within 5.0Å range:
probe atom residue distance (Å) B Occ
a:F501

b:0.5
occ:1.00
 F1 a:BEF501 0.0 0.5 1.0
BE a:BEF501 1.5 0.5 1.0
NH1 a:ARG366 2.3 0.7 1.0
F3 a:BEF501 2.5 0.5 1.0
F2 a:BEF501 2.6 0.5 1.0
O2B b:ADP1000 2.7 0.9 1.0
NH2 a:ARG366 3.0 0.7 1.0
CZ a:ARG366 3.1 0.7 1.0
N b:LYS181 3.4 0.9 1.0
CB b:PRO180 3.4 0.2 1.0
CA b:PRO180 3.5 0.2 1.0
C b:PRO180 3.9 0.2 1.0
PB b:ADP1000 4.1 0.9 1.0
NE a:ARG366 4.4 0.7 1.0
CA b:LYS181 4.4 0.9 1.0
CG b:PRO180 4.5 0.2 1.0
MG b:MG1001 4.7 0.5 1.0
O3B b:ADP1000 4.7 0.9 1.0
O b:HOH1101 4.8 0.7 1.0
N b:PRO180 4.8 0.2 1.0
NH1 b:ARG212 5.0 0.7 1.0

Fluorine binding site 2 out of 15 in 6z9p

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Fluorine binding site 2 out of 15 in the Transcription Termination Intermediate Complex 1


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 2 of Transcription Termination Intermediate Complex 1 within 5.0Å range:
probe atom residue distance (Å) B Occ
a:F501

b:0.5
occ:1.00
 F2 a:BEF501 0.0 0.5 1.0
BE a:BEF501 1.6 0.5 1.0
F3 a:BEF501 2.5 0.5 1.0
F1 a:BEF501 2.6 0.5 1.0
CD1 b:LEU320 3.4 0.3 1.0
O2B b:ADP1000 3.5 0.9 1.0
NZ b:LYS184 3.6 0.1 1.0
CA b:PRO180 3.6 0.2 1.0
O b:HOH1102 3.7 0.6 1.0
CE b:LYS184 4.0 0.1 1.0
CB b:PRO180 4.0 0.2 1.0
CG b:LEU320 4.0 0.3 1.0
CD2 b:LEU320 4.0 0.3 1.0
N b:PRO180 4.3 0.2 1.0
PB b:ADP1000 4.4 0.9 1.0
CG b:PRO180 4.4 0.2 1.0
MG b:MG1001 4.5 0.5 1.0
O b:PRO179 4.5 0.9 1.0
N b:LYS181 4.6 0.9 1.0
O3B b:ADP1000 4.6 0.9 1.0
NH1 a:ARG366 4.7 0.7 1.0
C b:PRO180 4.7 0.2 1.0
O1B b:ADP1000 4.7 0.9 1.0
C b:PRO179 4.8 0.9 1.0
O b:HOH1103 4.9 0.1 1.0
CD b:PRO180 5.0 0.2 1.0

Fluorine binding site 3 out of 15 in 6z9p

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Fluorine binding site 3 out of 15 in the Transcription Termination Intermediate Complex 1


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 3 of Transcription Termination Intermediate Complex 1 within 5.0Å range:
probe atom residue distance (Å) B Occ
a:F501

b:0.5
occ:1.00
 F3 a:BEF501 0.0 0.5 1.0
BE a:BEF501 1.5 0.5 1.0
F2 a:BEF501 2.5 0.5 1.0
F1 a:BEF501 2.5 0.5 1.0
MG b:MG1001 2.6 0.5 1.0
O b:HOH1103 2.8 0.1 1.0
O b:HOH1102 2.8 0.6 1.0
O2B b:ADP1000 3.2 0.9 1.0
O b:HOH1101 3.4 0.7 1.0
NH2 a:ARG366 3.4 0.7 1.0
O3B b:ADP1000 3.6 0.9 1.0
NH1 a:ARG366 3.7 0.7 1.0
CZ a:ARG366 3.8 0.7 1.0
PB b:ADP1000 3.9 0.9 1.0
NH1 b:ARG212 4.1 0.7 1.0
O1A b:ADP1000 4.7 0.9 1.0
OG1 b:THR185 4.9 0.5 1.0
NE a:ARG366 4.9 0.7 1.0
O1B b:ADP1000 4.9 0.9 1.0

Fluorine binding site 4 out of 15 in 6z9p

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Fluorine binding site 4 out of 15 in the Transcription Termination Intermediate Complex 1


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 4 of Transcription Termination Intermediate Complex 1 within 5.0Å range:
probe atom residue distance (Å) B Occ
b:F1002

b:0.4
occ:1.00
 F1 b:BEF1002 0.0 0.4 1.0
BE b:BEF1002 1.5 0.4 1.0
NH1 b:ARG366 2.3 0.7 1.0
F3 b:BEF1002 2.5 0.4 1.0
F2 b:BEF1002 2.6 0.4 1.0
N c:LYS181 2.8 0.9 1.0
O3B c:ADP1000 3.0 0.6 1.0
CZ b:ARG366 3.1 0.7 1.0
NH2 b:ARG366 3.1 0.7 1.0
CA c:PRO180 3.3 0.0 1.0
CB c:PRO180 3.5 0.0 1.0
C c:PRO180 3.5 0.0 1.0
CA c:LYS181 3.8 0.9 1.0
PB c:ADP1000 4.2 0.6 1.0
MG c:MG1001 4.3 0.1 1.0
O3A c:ADP1000 4.3 0.6 1.0
NE b:ARG366 4.4 0.7 1.0
CB c:LYS181 4.6 0.9 1.0
O2B c:ADP1000 4.6 0.6 1.0
N c:PRO180 4.7 0.0 1.0
O c:PRO180 4.7 0.0 1.0
CG c:PRO180 4.7 0.0 1.0
O c:HOH1101 4.8 0.8 1.0
C c:LYS181 5.0 0.9 1.0

Fluorine binding site 5 out of 15 in 6z9p

Go back to Fluorine Binding Sites List in 6z9p
Fluorine binding site 5 out of 15 in the Transcription Termination Intermediate Complex 1


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 5 of Transcription Termination Intermediate Complex 1 within 5.0Å range:
probe atom residue distance (Å) B Occ
b:F1002

b:0.4
occ:1.00
 F2 b:BEF1002 0.0 0.4 1.0
BE b:BEF1002 1.6 0.4 1.0
F3 b:BEF1002 2.5 0.4 1.0
F1 b:BEF1002 2.6 0.4 1.0
CA c:PRO180 3.3 0.0 1.0
NZ c:LYS184 3.5 0.2 1.0
O3B c:ADP1000 3.6 0.6 1.0
CB c:PRO180 3.8 0.0 1.0
CD1 c:LEU320 3.8 0.8 1.0
O c:HOH1102 4.0 0.1 1.0
CE c:LYS184 4.0 0.2 1.0
N c:PRO180 4.1 0.0 1.0
N c:LYS181 4.2 0.9 1.0
CD2 c:LEU320 4.2 0.8 1.0
CG c:LEU320 4.2 0.8 1.0
CG c:PRO180 4.3 0.0 1.0
NH1 b:ARG366 4.3 0.7 1.0
MG c:MG1001 4.3 0.1 1.0
O c:PRO179 4.3 0.3 1.0
C c:PRO180 4.3 0.0 1.0
C c:PRO179 4.6 0.3 1.0
PB c:ADP1000 4.8 0.6 1.0
O2B c:ADP1000 4.8 0.6 1.0
CD c:PRO180 4.9 0.0 1.0

Fluorine binding site 6 out of 15 in 6z9p

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Fluorine binding site 6 out of 15 in the Transcription Termination Intermediate Complex 1


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 6 of Transcription Termination Intermediate Complex 1 within 5.0Å range:
probe atom residue distance (Å) B Occ
b:F1002

b:0.4
occ:1.00
 F3 b:BEF1002 0.0 0.4 1.0
BE b:BEF1002 1.5 0.4 1.0
MG c:MG1001 2.2 0.1 1.0
F2 b:BEF1002 2.5 0.4 1.0
F1 b:BEF1002 2.5 0.4 1.0
O c:HOH1103 2.9 0.2 1.0
O c:HOH1102 2.9 0.1 1.0
NH2 b:ARG366 3.1 0.7 1.0
NH1 b:ARG366 3.3 0.7 1.0
O c:HOH1101 3.3 0.8 1.0
O3B c:ADP1000 3.4 0.6 1.0
O2B c:ADP1000 3.5 0.6 1.0
CZ b:ARG366 3.5 0.7 1.0
PB c:ADP1000 3.9 0.6 1.0
NH1 c:ARG212 4.4 0.9 1.0
O3A c:ADP1000 4.5 0.6 1.0
OG1 c:THR185 4.6 0.5 1.0
NE b:ARG366 4.7 0.7 1.0
NZ c:LYS184 4.8 0.2 1.0
N c:LYS181 4.9 0.9 1.0
O2A c:ADP1000 4.9 0.6 1.0
CE c:LYS184 4.9 0.2 1.0

Fluorine binding site 7 out of 15 in 6z9p

Go back to Fluorine Binding Sites List in 6z9p
Fluorine binding site 7 out of 15 in the Transcription Termination Intermediate Complex 1


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 7 of Transcription Termination Intermediate Complex 1 within 5.0Å range:
probe atom residue distance (Å) B Occ
c:F1002

b:0.1
occ:1.00
 F1 c:BEF1002 0.0 0.1 1.0
BE c:BEF1002 1.5 0.1 1.0
NH1 c:ARG366 2.3 0.4 1.0
F3 c:BEF1002 2.5 0.1 1.0
F2 c:BEF1002 2.6 0.1 1.0
CZ c:ARG366 3.3 0.4 1.0
O3B d:ADP1000 3.6 0.2 1.0
NH2 c:ARG366 3.6 0.4 1.0
CB d:PRO180 3.8 0.3 1.0
CA d:PRO180 4.0 0.3 1.0
N d:LYS181 4.1 0.3 1.0
NE c:ARG366 4.4 0.4 1.0
O d:HOH1101 4.4 0.1 1.0
NH1 d:ARG212 4.4 0.3 1.0
O2B d:ADP1000 4.5 0.2 1.0
PB d:ADP1000 4.6 0.2 1.0
C d:PRO180 4.6 0.3 1.0
CG d:PRO180 4.8 0.3 1.0
NH2 d:ARG212 4.9 0.3 1.0
MG d:MG1001 4.9 0.0 1.0

Fluorine binding site 8 out of 15 in 6z9p

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Fluorine binding site 8 out of 15 in the Transcription Termination Intermediate Complex 1


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 8 of Transcription Termination Intermediate Complex 1 within 5.0Å range:
probe atom residue distance (Å) B Occ
c:F1002

b:0.1
occ:1.00
 F2 c:BEF1002 0.0 0.1 1.0
BE c:BEF1002 1.6 0.1 1.0
F3 c:BEF1002 2.5 0.1 1.0
F1 c:BEF1002 2.6 0.1 1.0
O3B d:ADP1000 2.9 0.2 1.0
NZ d:LYS184 3.4 0.4 1.0
CA d:PRO180 3.5 0.3 1.0
CD1 d:LEU320 3.5 0.0 1.0
CE d:LYS184 3.8 0.4 1.0
CB d:PRO180 3.9 0.3 1.0
O d:HOH1102 3.9 0.3 1.0
CG d:LEU320 4.0 0.0 1.0
PB d:ADP1000 4.0 0.2 1.0
CD2 d:LEU320 4.0 0.0 1.0
O2B d:ADP1000 4.0 0.2 1.0
N d:PRO180 4.1 0.3 1.0
CG d:PRO180 4.3 0.3 1.0
O d:PRO179 4.3 0.5 1.0
N d:LYS181 4.4 0.3 1.0
C d:PRO180 4.5 0.3 1.0
C d:PRO179 4.5 0.5 1.0
MG d:MG1001 4.6 0.0 1.0
NH1 c:ARG366 4.8 0.4 1.0
CD d:PRO180 4.8 0.3 1.0
O1B d:ADP1000 4.9 0.2 1.0

Fluorine binding site 9 out of 15 in 6z9p

Go back to Fluorine Binding Sites List in 6z9p
Fluorine binding site 9 out of 15 in the Transcription Termination Intermediate Complex 1


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 9 of Transcription Termination Intermediate Complex 1 within 5.0Å range:
probe atom residue distance (Å) B Occ
c:F1002

b:0.1
occ:1.00
 F3 c:BEF1002 0.0 0.1 1.0
BE c:BEF1002 1.5 0.1 1.0
F2 c:BEF1002 2.5 0.1 1.0
F1 c:BEF1002 2.5 0.1 1.0
MG d:MG1001 2.6 0.0 1.0
O d:HOH1102 2.8 0.3 1.0
O d:HOH1103 2.9 0.2 1.0
O d:HOH1101 2.9 0.1 1.0
O2B d:ADP1000 3.0 0.2 1.0
O3B d:ADP1000 3.5 0.2 1.0
PB d:ADP1000 3.8 0.2 1.0
NH1 c:ARG366 4.0 0.4 1.0
NH2 c:ARG366 4.1 0.4 1.0
CZ c:ARG366 4.3 0.4 1.0
NH1 d:ARG212 4.5 0.3 1.0
O3A d:ADP1000 4.7 0.2 1.0
CE d:LYS184 4.7 0.4 1.0
O2A d:ADP1000 4.7 0.2 1.0
NZ d:LYS184 4.7 0.4 1.0
OG1 d:THR185 4.8 0.5 1.0
OD1 d:ASP265 4.8 0.7 1.0

Fluorine binding site 10 out of 15 in 6z9p

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Fluorine binding site 10 out of 15 in the Transcription Termination Intermediate Complex 1


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 10 of Transcription Termination Intermediate Complex 1 within 5.0Å range:
probe atom residue distance (Å) B Occ
e:F503

b:0.0
occ:1.00
 F1 e:BEF503 0.0 0.0 1.0
BE e:BEF503 1.5 0.0 1.0
NH1 d:ARG366 2.3 0.2 1.0
O2B e:ADP501 2.5 0.2 1.0
F3 e:BEF503 2.5 0.0 1.0
F2 e:BEF503 2.6 0.0 1.0
N e:LYS181 3.0 0.8 1.0
CB e:PRO180 3.2 0.0 1.0
CA e:PRO180 3.3 0.0 1.0
CZ d:ARG366 3.4 0.2 1.0
NH2 d:ARG366 3.6 0.2 1.0
C e:PRO180 3.6 0.0 1.0
PB e:ADP501 3.7 0.2 1.0
CA e:LYS181 4.1 0.8 1.0
O3B e:ADP501 4.2 0.2 1.0
CG e:PRO180 4.4 0.0 1.0
MG e:MG502 4.5 0.7 1.0
O1B e:ADP501 4.5 0.2 1.0
NE d:ARG366 4.6 0.2 1.0
N e:PRO180 4.6 0.0 1.0
O2A e:ADP501 4.7 0.2 1.0
CB e:LYS181 4.8 0.8 1.0
O e:PRO180 4.8 0.0 1.0
O3A e:ADP501 4.9 0.2 1.0

Reference:

N.Said, T.Hilal, B.Loll, M.C.Wahl. Snapshots Along A Factor-Mediated, Elongation Complex-Dependent Path to Transcription Termination To Be Published.
Page generated: Fri Aug 2 05:02:21 2024

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