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Fluorine in PDB 6zc9: Structure of 14-3-3 Gamma in Complex with NEDD4-2 14-3-3 Binding Motif SER448

Enzymatic activity of Structure of 14-3-3 Gamma in Complex with NEDD4-2 14-3-3 Binding Motif SER448

All present enzymatic activity of Structure of 14-3-3 Gamma in Complex with NEDD4-2 14-3-3 Binding Motif SER448:
2.3.2.26;

Protein crystallography data

The structure of Structure of 14-3-3 Gamma in Complex with NEDD4-2 14-3-3 Binding Motif SER448, PDB code: 6zc9 was solved by P.Pohl, D.Kalabova, T.Obsil, V.Obsilova, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 25.77 / 1.90
Space group H 3
Cell size a, b, c (Å), α, β, γ (°) 205.707, 205.707, 74.649, 90, 90, 120
R / Rfree (%) 21.2 / 23.9

Fluorine Binding Sites:

Pages:

>>> Page 1 <<< Page 2, Binding sites: 11 - 20; Page 3, Binding sites: 21 - 24;

Binding sites:

The binding sites of Fluorine atom in the Structure of 14-3-3 Gamma in Complex with NEDD4-2 14-3-3 Binding Motif SER448 (pdb code 6zc9). This binding sites where shown within 5.0 Angstroms radius around Fluorine atom.
In total 24 binding sites of Fluorine where determined in the Structure of 14-3-3 Gamma in Complex with NEDD4-2 14-3-3 Binding Motif SER448, PDB code: 6zc9:
Jump to Fluorine binding site number: 1; 2; 3; 4; 5; 6; 7; 8; 9; 10;

Fluorine binding site 1 out of 24 in 6zc9

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Fluorine binding site 1 out of 24 in the Structure of 14-3-3 Gamma in Complex with NEDD4-2 14-3-3 Binding Motif SER448


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 1 of Structure of 14-3-3 Gamma in Complex with NEDD4-2 14-3-3 Binding Motif SER448 within 5.0Å range:
probe atom residue distance (Å) B Occ
B:F301

b:54.1
occ:1.00
 F7 B:CFH301 0.0 54.1 1.0
C1 B:CFH301 1.4 53.8 1.0
F5 B:CFH301 2.2 55.7 1.0
F6 B:CFH301 2.2 53.0 1.0
C2 B:CFH301 2.3 46.2 1.0
F10 B:CFH301 2.6 48.8 1.0
C3 B:CFH301 2.9 51.8 1.0
CG2 D:ILE66 3.4 41.2 1.0
F8 B:CFH301 3.5 50.7 1.0
O4 B:CFH301 3.5 56.8 1.0
OG1 D:THR70 3.6 63.1 1.0
CG2 D:VAL82 4.0 44.1 1.0
F9 B:CFH301 4.1 55.8 1.0
CD D:LYS78 4.2 47.7 1.0
CG D:LYS78 4.5 50.5 1.0
OD2 C:ASP209 4.8 63.9 1.0
CD1 B:LEU13 4.8 36.1 1.0
CB D:THR70 4.9 49.0 1.0
CB D:ILE66 4.9 32.7 1.0

Fluorine binding site 2 out of 24 in 6zc9

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Fluorine binding site 2 out of 24 in the Structure of 14-3-3 Gamma in Complex with NEDD4-2 14-3-3 Binding Motif SER448


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 2 of Structure of 14-3-3 Gamma in Complex with NEDD4-2 14-3-3 Binding Motif SER448 within 5.0Å range:
probe atom residue distance (Å) B Occ
B:F301

b:55.7
occ:1.00
 F5 B:CFH301 0.0 55.7 1.0
C1 B:CFH301 1.4 53.8 1.0
F6 B:CFH301 2.2 53.0 1.0
F7 B:CFH301 2.2 54.1 1.0
C2 B:CFH301 2.4 46.2 1.0
F8 B:CFH301 2.6 50.7 1.0
O4 B:CFH301 2.7 56.8 1.0
C3 B:CFH301 2.9 51.8 1.0
F10 B:CFH301 3.3 48.8 1.0
CB B:LEU13 3.4 34.7 1.0
O B:GLN9 3.5 34.4 1.0
CD1 B:LEU13 3.7 36.1 1.0
CE D:MET81 3.9 45.6 1.0
CG B:LEU13 3.9 41.8 1.0
CD2 B:LEU13 4.0 40.3 1.0
CA B:LEU13 4.0 36.0 1.0
CG2 D:VAL82 4.1 44.1 1.0
F9 B:CFH301 4.1 55.8 1.0
N B:LEU13 4.1 32.3 1.0
C B:GLN9 4.3 34.6 1.0
CG2 D:ILE66 4.5 41.2 1.0
CB B:GLN9 4.7 37.4 1.0
CA B:GLN9 4.8 38.9 1.0
SD D:MET81 5.0 45.8 1.0

Fluorine binding site 3 out of 24 in 6zc9

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Fluorine binding site 3 out of 24 in the Structure of 14-3-3 Gamma in Complex with NEDD4-2 14-3-3 Binding Motif SER448


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 3 of Structure of 14-3-3 Gamma in Complex with NEDD4-2 14-3-3 Binding Motif SER448 within 5.0Å range:
probe atom residue distance (Å) B Occ
B:F301

b:53.0
occ:1.00
 F6 B:CFH301 0.0 53.0 1.0
C1 B:CFH301 1.4 53.8 1.0
F5 B:CFH301 2.2 55.7 1.0
F7 B:CFH301 2.2 54.1 1.0
C2 B:CFH301 2.4 46.2 1.0
O4 B:CFH301 2.7 56.8 1.0
CG D:LYS78 3.2 50.5 1.0
CD D:LYS78 3.2 47.7 1.0
C3 B:CFH301 3.7 51.8 1.0
CE D:MET81 3.8 45.6 1.0
CB B:GLN9 3.8 37.4 1.0
OD2 C:ASP209 4.0 63.9 1.0
CG B:GLN9 4.0 40.2 1.0
F8 B:CFH301 4.1 50.7 1.0
F10 B:CFH301 4.2 48.8 1.0
CG2 D:VAL82 4.2 44.1 1.0
CE D:LYS78 4.2 55.2 1.0
CD B:GLN9 4.3 42.0 1.0
OE1 B:GLN9 4.4 47.4 1.0
O B:GLN9 4.4 34.4 1.0
OD1 C:ASP209 4.5 56.7 1.0
CA B:GLN9 4.6 38.9 1.0
CG C:ASP209 4.7 58.7 1.0
NZ D:LYS78 4.7 57.3 1.0
CB D:LYS78 4.7 46.2 1.0
C B:GLN9 4.7 34.6 1.0
F9 B:CFH301 4.7 55.8 1.0
NE2 B:GLN9 4.9 54.4 1.0

Fluorine binding site 4 out of 24 in 6zc9

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Fluorine binding site 4 out of 24 in the Structure of 14-3-3 Gamma in Complex with NEDD4-2 14-3-3 Binding Motif SER448


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 4 of Structure of 14-3-3 Gamma in Complex with NEDD4-2 14-3-3 Binding Motif SER448 within 5.0Å range:
probe atom residue distance (Å) B Occ
B:F301

b:48.8
occ:1.00
 F10 B:CFH301 0.0 48.8 1.0
C3 B:CFH301 1.4 51.8 1.0
F8 B:CFH301 2.2 50.7 1.0
F9 B:CFH301 2.2 55.8 1.0
C2 B:CFH301 2.4 46.2 1.0
F7 B:CFH301 2.6 54.1 1.0
C1 B:CFH301 2.9 53.8 1.0
F5 B:CFH301 3.3 55.7 1.0
CG2 C:ILE205 3.4 60.0 1.0
O4 B:CFH301 3.6 56.8 1.0
CG2 D:ILE66 3.7 41.2 1.0
O C:ILE205 4.0 55.3 1.0
F6 B:CFH301 4.2 53.0 1.0
CD1 D:ILE66 4.4 38.0 1.0
CD1 C:ILE205 4.5 46.0 1.0
CG1 D:ILE66 4.7 38.0 1.0
CB C:ILE205 4.7 51.7 1.0
C C:ILE205 4.7 53.3 1.0
CB D:ILE66 4.8 32.7 1.0
CA C:ILE205 4.9 54.1 1.0

Fluorine binding site 5 out of 24 in 6zc9

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Fluorine binding site 5 out of 24 in the Structure of 14-3-3 Gamma in Complex with NEDD4-2 14-3-3 Binding Motif SER448


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 5 of Structure of 14-3-3 Gamma in Complex with NEDD4-2 14-3-3 Binding Motif SER448 within 5.0Å range:
probe atom residue distance (Å) B Occ
B:F301

b:50.7
occ:1.00
 F8 B:CFH301 0.0 50.7 1.0
C3 B:CFH301 1.4 51.8 1.0
F9 B:CFH301 2.2 55.8 1.0
F10 B:CFH301 2.2 48.8 1.0
C2 B:CFH301 2.4 46.2 1.0
F5 B:CFH301 2.6 55.7 1.0
O4 B:CFH301 2.7 56.8 1.0
C1 B:CFH301 2.9 53.8 1.0
N B:LEU13 3.3 32.3 1.0
F7 B:CFH301 3.5 54.1 1.0
CA B:LEU13 3.5 36.0 1.0
C B:ARG12 3.5 33.0 1.0
CB B:ARG12 3.6 39.0 1.0
O B:ARG12 3.8 33.2 1.0
CB B:LEU13 3.9 34.7 1.0
O B:GLN9 4.0 34.4 1.0
F6 B:CFH301 4.1 53.0 1.0
CD1 B:LEU13 4.2 36.1 1.0
CA B:ARG12 4.2 32.5 1.0
CG B:GLN16 4.7 33.9 1.0
CG B:LEU13 4.7 41.8 1.0
CD1 D:ILE66 4.7 38.0 1.0
CG2 D:ILE66 4.9 41.2 1.0
C B:LEU13 4.9 33.3 1.0
CG B:ARG12 4.9 39.4 1.0
O C:HOH315 5.0 38.0 1.0

Fluorine binding site 6 out of 24 in 6zc9

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Fluorine binding site 6 out of 24 in the Structure of 14-3-3 Gamma in Complex with NEDD4-2 14-3-3 Binding Motif SER448


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 6 of Structure of 14-3-3 Gamma in Complex with NEDD4-2 14-3-3 Binding Motif SER448 within 5.0Å range:
probe atom residue distance (Å) B Occ
B:F301

b:55.8
occ:1.00
 F9 B:CFH301 0.0 55.8 1.0
C3 B:CFH301 1.4 51.8 1.0
F8 B:CFH301 2.2 50.7 1.0
F10 B:CFH301 2.2 48.8 1.0
C2 B:CFH301 2.4 46.2 1.0
O4 B:CFH301 2.8 56.8 1.0
C1 B:CFH301 3.7 53.8 1.0
OD1 C:ASP209 3.7 56.7 1.0
CB B:ARG12 3.8 39.0 1.0
CB C:LEU208 3.9 62.5 1.0
CD B:ARG12 4.1 41.0 1.0
F7 B:CFH301 4.1 54.1 1.0
F5 B:CFH301 4.1 55.7 1.0
O C:ILE205 4.4 55.3 1.0
CG C:ASP209 4.4 58.7 1.0
CD1 C:LEU208 4.4 70.4 1.0
OD2 C:ASP209 4.6 63.9 1.0
CG B:ARG12 4.6 39.4 1.0
N C:ASP209 4.7 58.0 1.0
F6 B:CFH301 4.7 53.0 1.0
CG C:LEU208 4.8 66.4 1.0
C B:ARG12 4.8 33.0 1.0
CA C:LEU208 4.8 56.6 1.0
C C:LEU208 4.8 58.1 1.0
CG2 C:ILE205 4.9 60.0 1.0
O C:HOH315 4.9 38.0 1.0
O B:ARG12 5.0 33.2 1.0
CA B:ARG12 5.0 32.5 1.0

Fluorine binding site 7 out of 24 in 6zc9

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Fluorine binding site 7 out of 24 in the Structure of 14-3-3 Gamma in Complex with NEDD4-2 14-3-3 Binding Motif SER448


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 7 of Structure of 14-3-3 Gamma in Complex with NEDD4-2 14-3-3 Binding Motif SER448 within 5.0Å range:
probe atom residue distance (Å) B Occ
B:F302

b:46.9
occ:1.00
 F7 B:CFH302 0.0 46.9 1.0
C1 B:CFH302 1.4 49.3 1.0
F6 B:CFH302 2.2 41.7 1.0
F5 B:CFH302 2.2 49.4 1.0
C2 B:CFH302 2.4 47.8 1.0
F10 B:CFH302 2.5 50.3 1.0
C3 B:CFH302 2.8 53.4 1.0
F9 B:CFH302 3.3 52.2 1.0
O4 B:CFH302 3.6 45.8 1.0
CG2 A:ILE66 3.6 45.8 1.0
CG2 B:ILE205 3.8 52.2 1.0
CD1 A:ILE66 4.1 45.1 1.0
F8 B:CFH302 4.1 50.8 1.0
O B:ILE205 4.3 52.6 1.0
CG1 A:ILE66 4.5 44.7 1.0
CB A:ILE66 4.7 41.8 1.0
CD1 B:LEU208 4.7 51.8 1.0
CD1 C:LEU13 4.9 41.3 1.0
CD1 B:ILE205 4.9 50.8 1.0

Fluorine binding site 8 out of 24 in 6zc9

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Fluorine binding site 8 out of 24 in the Structure of 14-3-3 Gamma in Complex with NEDD4-2 14-3-3 Binding Motif SER448


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 8 of Structure of 14-3-3 Gamma in Complex with NEDD4-2 14-3-3 Binding Motif SER448 within 5.0Å range:
probe atom residue distance (Å) B Occ
B:F302

b:49.4
occ:1.00
 F5 B:CFH302 0.0 49.4 1.0
C1 B:CFH302 1.4 49.3 1.0
F6 B:CFH302 2.2 41.7 1.0
F7 B:CFH302 2.2 46.9 1.0
C2 B:CFH302 2.4 47.8 1.0
O4 B:CFH302 2.8 45.8 1.0
CB B:LEU208 3.5 51.1 1.0
CD1 B:LEU208 3.6 51.8 1.0
C3 B:CFH302 3.7 53.4 1.0
OD1 B:ASP209 3.8 46.0 1.0
CB C:ARG12 4.0 33.2 1.0
F10 B:CFH302 4.1 50.3 1.0
CG B:LEU208 4.2 57.4 1.0
F9 B:CFH302 4.2 52.2 1.0
CD C:ARG12 4.4 42.7 1.0
CG B:ASP209 4.4 53.3 1.0
O B:ILE205 4.5 52.6 1.0
OD2 B:ASP209 4.6 47.8 1.0
CA B:LEU208 4.6 47.3 1.0
N B:ASP209 4.6 52.3 1.0
F8 B:CFH302 4.7 50.8 1.0
C B:LEU208 4.8 44.4 1.0
CG C:ARG12 4.8 39.8 1.0
C C:ARG12 4.9 32.4 1.0
O B:HOH403 4.9 41.2 1.0
O C:ARG12 5.0 35.2 1.0

Fluorine binding site 9 out of 24 in 6zc9

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Fluorine binding site 9 out of 24 in the Structure of 14-3-3 Gamma in Complex with NEDD4-2 14-3-3 Binding Motif SER448


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 9 of Structure of 14-3-3 Gamma in Complex with NEDD4-2 14-3-3 Binding Motif SER448 within 5.0Å range:
probe atom residue distance (Å) B Occ
B:F302

b:41.7
occ:1.00
 F6 B:CFH302 0.0 41.7 1.0
C1 B:CFH302 1.4 49.3 1.0
F5 B:CFH302 2.2 49.4 1.0
F7 B:CFH302 2.2 46.9 1.0
C2 B:CFH302 2.4 47.8 1.0
F9 B:CFH302 2.6 52.2 1.0
O4 B:CFH302 2.7 45.8 1.0
C3 B:CFH302 2.9 53.4 1.0
N C:LEU13 3.3 28.7 1.0
F10 B:CFH302 3.4 50.3 1.0
CA C:LEU13 3.5 30.6 1.0
C C:ARG12 3.5 32.4 1.0
CB C:ARG12 3.7 33.2 1.0
O C:ARG12 3.8 35.2 1.0
CB C:LEU13 3.9 33.8 1.0
O C:GLN9 4.0 34.0 1.0
F8 B:CFH302 4.1 50.8 1.0
CD1 C:LEU13 4.2 41.3 1.0
CA C:ARG12 4.2 33.2 1.0
CG C:LEU13 4.7 40.2 1.0
CD1 A:ILE66 4.7 45.1 1.0
CG C:GLN16 4.8 29.4 1.0
CG2 A:ILE66 4.9 45.8 1.0
C C:LEU13 4.9 28.8 1.0
O B:HOH403 4.9 41.2 1.0
OD1 B:ASP209 5.0 46.0 1.0
CG C:ARG12 5.0 39.8 1.0

Fluorine binding site 10 out of 24 in 6zc9

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Fluorine binding site 10 out of 24 in the Structure of 14-3-3 Gamma in Complex with NEDD4-2 14-3-3 Binding Motif SER448


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 10 of Structure of 14-3-3 Gamma in Complex with NEDD4-2 14-3-3 Binding Motif SER448 within 5.0Å range:
probe atom residue distance (Å) B Occ
B:F302

b:50.3
occ:1.00
 F10 B:CFH302 0.0 50.3 1.0
C3 B:CFH302 1.4 53.4 1.0
F9 B:CFH302 2.2 52.2 1.0
F8 B:CFH302 2.2 50.8 1.0
C2 B:CFH302 2.4 47.8 1.0
F7 B:CFH302 2.5 46.9 1.0
C1 B:CFH302 2.9 49.3 1.0
CG2 A:ILE66 3.2 45.8 1.0
F6 B:CFH302 3.4 41.7 1.0
O4 B:CFH302 3.5 45.8 1.0
CG2 A:VAL82 4.0 38.2 1.0
F5 B:CFH302 4.1 49.4 1.0
CD A:LYS78 4.6 49.6 1.0
CD1 C:LEU13 4.7 41.3 1.0
CB A:ILE66 4.7 41.8 1.0
CG A:LYS78 4.9 53.7 1.0
OD2 B:ASP209 4.9 47.8 1.0

Reference:

P.Pohl, R.Joshi, D.Kalabova, T.Obsil, V.Obsilova. 14-3-3-Protein Regulates NEDD4-2 By Modulating Interactions Between Hect and Ww Domains Commun Biol 2021.
ISSN: ESSN 2399-3642
DOI: 10.1038/S42003-021-02419-0
Page generated: Fri Aug 2 05:06:16 2024

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