Fluorine in PDB 7a16: Crystal Structure of Human Methionine Aminopeptidase-2 in Complex with An Inhibitor GSK2229238A (Compound 43)

Enzymatic activity of Crystal Structure of Human Methionine Aminopeptidase-2 in Complex with An Inhibitor GSK2229238A (Compound 43)

All present enzymatic activity of Crystal Structure of Human Methionine Aminopeptidase-2 in Complex with An Inhibitor GSK2229238A (Compound 43):
3.4.11.18;

Protein crystallography data

The structure of Crystal Structure of Human Methionine Aminopeptidase-2 in Complex with An Inhibitor GSK2229238A (Compound 43), PDB code: 7a16 was solved by J.H.Thorpe, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 26.32 / 1.90
Space group C 2 2 21
Cell size a, b, c (Å), α, β, γ (°) 89.891, 100.891, 99.608, 90.00, 90.00, 90.00
R / Rfree (%) 18.7 / 21.6

Other elements in 7a16:

The structure of Crystal Structure of Human Methionine Aminopeptidase-2 in Complex with An Inhibitor GSK2229238A (Compound 43) also contains other interesting chemical elements:

Manganese (Mn) 2 atoms

Fluorine Binding Sites:

The binding sites of Fluorine atom in the Crystal Structure of Human Methionine Aminopeptidase-2 in Complex with An Inhibitor GSK2229238A (Compound 43) (pdb code 7a16). This binding sites where shown within 5.0 Angstroms radius around Fluorine atom.
In total 2 binding sites of Fluorine where determined in the Crystal Structure of Human Methionine Aminopeptidase-2 in Complex with An Inhibitor GSK2229238A (Compound 43), PDB code: 7a16:
Jump to Fluorine binding site number: 1; 2;

Fluorine binding site 1 out of 2 in 7a16

Go back to Fluorine Binding Sites List in 7a16
Fluorine binding site 1 out of 2 in the Crystal Structure of Human Methionine Aminopeptidase-2 in Complex with An Inhibitor GSK2229238A (Compound 43)


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 1 of Crystal Structure of Human Methionine Aminopeptidase-2 in Complex with An Inhibitor GSK2229238A (Compound 43) within 5.0Å range:
probe atom residue distance (Å) B Occ
A:F508

b:23.9
occ:1.00
F14 A:HZE508 0.0 23.9 1.0
C1 A:HZE508 1.4 24.9 1.0
C4 A:HZE508 2.4 24.4 1.0
C2 A:HZE508 2.4 23.9 1.0
F15 A:HZE508 2.7 21.7 1.0
CD1 A:TYR444 3.2 22.6 1.0
CB A:ALA414 3.4 18.1 1.0
CG A:TYR444 3.5 21.3 1.0
C3 A:HZE508 3.6 20.9 1.0
C5 A:HZE508 3.6 22.6 1.0
CB A:MET384 3.7 19.1 1.0
CB A:TYR444 3.7 19.1 1.0
O A:TYR383 3.8 20.6 1.0
CE1 A:TYR444 3.8 21.4 1.0
C A:TYR383 3.9 21.6 1.0
CB A:HIS382 4.0 15.5 1.0
C6 A:HZE508 4.1 22.0 1.0
N A:TYR383 4.1 16.5 1.0
CD2 A:TYR444 4.3 21.6 1.0
N A:MET384 4.4 18.5 1.0
CA A:TYR383 4.4 16.5 1.0
SD A:MET384 4.5 22.0 1.0
C A:HIS382 4.5 19.6 1.0
CA A:ALA414 4.5 18.1 1.0
CZ A:TYR444 4.6 24.6 1.0
CA A:MET384 4.7 17.7 1.0
CG A:MET384 4.7 20.8 1.0
CE A:MET384 4.7 19.3 1.0
CD2 A:HIS382 4.7 18.6 1.0
CE2 A:TYR444 4.8 22.0 1.0
CA A:HIS382 4.8 16.6 1.0
CG A:HIS382 4.8 17.8 1.0
O A:HIS382 5.0 17.8 1.0
C9 A:HZE508 5.0 20.5 1.0

Fluorine binding site 2 out of 2 in 7a16

Go back to Fluorine Binding Sites List in 7a16
Fluorine binding site 2 out of 2 in the Crystal Structure of Human Methionine Aminopeptidase-2 in Complex with An Inhibitor GSK2229238A (Compound 43)


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 2 of Crystal Structure of Human Methionine Aminopeptidase-2 in Complex with An Inhibitor GSK2229238A (Compound 43) within 5.0Å range:
probe atom residue distance (Å) B Occ
A:F508

b:21.7
occ:1.00
F15 A:HZE508 0.0 21.7 1.0
C2 A:HZE508 1.3 23.9 1.0
C3 A:HZE508 2.3 20.9 1.0
C1 A:HZE508 2.4 24.9 1.0
F14 A:HZE508 2.7 23.9 1.0
CB A:ALA414 3.0 18.1 1.0
CD2 A:HIS382 3.3 18.6 1.0
CD A:PRO220 3.3 19.7 1.0
CB A:PHE219 3.6 17.3 1.0
C6 A:HZE508 3.6 22.0 1.0
C4 A:HZE508 3.6 24.4 1.0
CG A:HIS382 3.9 17.8 1.0
CB A:HIS382 4.0 15.5 1.0
C5 A:HZE508 4.1 22.6 1.0
CG A:PRO220 4.2 23.2 1.0
N A:PRO220 4.3 17.8 1.0
NE2 A:HIS382 4.3 18.7 1.0
CA A:ALA414 4.4 18.1 1.0
CG A:PHE219 4.5 17.4 1.0
CA A:PHE219 4.5 15.9 1.0
CD1 A:PHE219 4.7 17.6 1.0
O A:HOH889 4.7 21.6 1.0
O A:HOH758 4.8 17.4 1.0
C A:PHE219 4.8 19.0 1.0
C A:ALA414 4.8 20.0 1.0
O A:PHE415 4.8 17.6 1.0
N7 A:HZE508 4.9 22.5 1.0
CB A:PRO220 4.9 18.9 1.0
N A:PHE415 4.9 17.7 1.0
O A:TYR383 4.9 20.6 1.0
CA A:HIS382 5.0 16.6 1.0

Reference:

D.J.Hirst, M.Brandt, G.Bruton, E.Christodoulou, L.Cutler, N.Deeks, J.D.Goodacre, T.Jack, M.Lindon, A.Miah, K.Page, N.Parr, L.Shukla, M.Sims, P.Thomas, J.Thorpe, D.S.Holmes. Structure-Based Optimisation of Orally Active & Reversible Metap-2 Inhibitors Maintaining A Tight 'Molecular Budget'. Bioorg.Med.Chem.Lett. V. 30 27533 2020.
ISSN: ESSN 1464-3405
PubMed: 32919012
DOI: 10.1016/J.BMCL.2020.127533
Page generated: Sun Dec 13 13:47:37 2020

Last articles

Zn in 8WB0
Zn in 8WAX
Zn in 8WAU
Zn in 8WAZ
Zn in 8WAY
Zn in 8WAV
Zn in 8WAW
Zn in 8WAT
Zn in 8W7M
Zn in 8WD3
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy