Fluorine in PDB 7add: Transcription Termination Intermediate Complex Iiia

Enzymatic activity of Transcription Termination Intermediate Complex Iiia

All present enzymatic activity of Transcription Termination Intermediate Complex Iiia:
2.7.7.6;

Other elements in 7add:

The structure of Transcription Termination Intermediate Complex Iiia also contains other interesting chemical elements:

Magnesium (Mg) 6 atoms
Zinc (Zn) 2 atoms

Fluorine Binding Sites:

Pages:

>>> Page 1 <<< Page 2, Binding sites: 11 - 15;

Binding sites:

The binding sites of Fluorine atom in the Transcription Termination Intermediate Complex Iiia (pdb code 7add). This binding sites where shown within 5.0 Angstroms radius around Fluorine atom.
In total 15 binding sites of Fluorine where determined in the Transcription Termination Intermediate Complex Iiia, PDB code: 7add:
Jump to Fluorine binding site number: 1; 2; 3; 4; 5; 6; 7; 8; 9; 10;

Fluorine binding site 1 out of 15 in 7add

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Fluorine binding site 1 out of 15 in the Transcription Termination Intermediate Complex Iiia


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 1 of Transcription Termination Intermediate Complex Iiia within 5.0Å range:
probe atom residue distance (Å) B Occ
a:F1002

b:0.4
occ:1.00
 F1 a:BEF1002 0.0 0.4 1.0
BE a:BEF1002 1.5 0.4 1.0
NH2 a:ARG212 2.3 0.5 1.0
F3 a:BEF1002 2.5 0.4 1.0
F2 a:BEF1002 2.6 0.4 1.0
O1B a:ADP1000 2.8 0.1 1.0
NH1 f:ARG366 3.2 0.8 1.0
NE f:ARG366 3.6 0.8 1.0
CZ a:ARG212 3.6 0.5 1.0
CZ f:ARG366 3.7 0.8 1.0
PB a:ADP1000 4.1 0.1 1.0
NH1 a:ARG212 4.2 0.5 1.0
O a:HOH1101 4.3 1.0 1.0
O a:HOH1103 4.3 0.6 1.0
MG a:MG1001 4.5 0.7 1.0
O3B a:ADP1000 4.5 0.1 1.0
NE a:ARG212 4.6 0.5 1.0
NH2 a:ARG269 4.6 0.9 1.0
NZ a:LYS184 4.7 0.5 1.0
CD f:ARG366 4.7 0.8 1.0
NH2 f:ARG366 4.8 0.8 1.0
O a:HOH1102 4.8 0.9 1.0
O1A a:ADP1000 4.9 0.1 1.0

Fluorine binding site 2 out of 15 in 7add

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Fluorine binding site 2 out of 15 in the Transcription Termination Intermediate Complex Iiia


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 2 of Transcription Termination Intermediate Complex Iiia within 5.0Å range:
probe atom residue distance (Å) B Occ
a:F1002

b:0.4
occ:1.00
 F2 a:BEF1002 0.0 0.4 1.0
BE a:BEF1002 1.6 0.4 1.0
F3 a:BEF1002 2.5 0.4 1.0
F1 a:BEF1002 2.6 0.4 1.0
NH2 a:ARG269 3.4 0.9 1.0
NZ a:LYS184 3.6 0.5 1.0
O a:HOH1102 3.8 0.9 1.0
CD1 a:LEU320 4.0 0.3 1.0
CD2 a:LEU320 4.0 0.3 1.0
NE a:ARG269 4.0 0.9 1.0
O1B a:ADP1000 4.0 0.1 1.0
CZ a:ARG269 4.1 0.9 1.0
NH2 a:ARG212 4.2 0.5 1.0
O a:HOH1103 4.4 0.6 1.0
OE1 a:GLU211 4.6 0.2 1.0
CE a:LYS184 4.6 0.5 1.0
CG a:LEU320 4.6 0.3 1.0
MG a:MG1001 4.7 0.7 1.0
PB a:ADP1000 4.9 0.1 1.0
O3B a:ADP1000 5.0 0.1 1.0

Fluorine binding site 3 out of 15 in 7add

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Fluorine binding site 3 out of 15 in the Transcription Termination Intermediate Complex Iiia


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 3 of Transcription Termination Intermediate Complex Iiia within 5.0Å range:
probe atom residue distance (Å) B Occ
a:F1002

b:0.4
occ:1.00
 F3 a:BEF1002 0.0 0.4 1.0
BE a:BEF1002 1.5 0.4 1.0
O1B a:ADP1000 2.3 0.1 1.0
O a:HOH1103 2.3 0.6 1.0
MG a:MG1001 2.3 0.7 1.0
O a:HOH1102 2.3 0.9 1.0
F2 a:BEF1002 2.5 0.4 1.0
F1 a:BEF1002 2.5 0.4 1.0
O a:HOH1101 3.0 1.0 1.0
PB a:ADP1000 3.2 0.1 1.0
NZ a:LYS184 3.3 0.5 1.0
O2B a:ADP1000 3.3 0.1 1.0
NH2 a:ARG212 3.4 0.5 1.0
NH1 a:ARG212 4.0 0.5 1.0
O3B a:ADP1000 4.1 0.1 1.0
CZ a:ARG212 4.2 0.5 1.0
OE1 a:GLU211 4.2 0.2 1.0
O1A a:ADP1000 4.4 0.1 1.0
OG1 a:THR185 4.5 0.5 1.0
CE a:LYS184 4.5 0.5 1.0
O3A a:ADP1000 4.5 0.1 1.0
OE2 a:GLU211 4.6 0.2 1.0
CD a:GLU211 4.7 0.2 1.0
PA a:ADP1000 4.9 0.1 1.0
OD2 a:ASP265 4.9 0.6 1.0

Fluorine binding site 4 out of 15 in 7add

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Fluorine binding site 4 out of 15 in the Transcription Termination Intermediate Complex Iiia


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 4 of Transcription Termination Intermediate Complex Iiia within 5.0Å range:
probe atom residue distance (Å) B Occ
b:F1002

b:0.9
occ:1.00
 F1 b:BEF1002 0.0 0.9 1.0
BE b:BEF1002 1.5 0.9 1.0
NH2 b:ARG212 2.2 96.7 1.0
F3 b:BEF1002 2.5 0.9 1.0
F2 b:BEF1002 2.6 0.9 1.0
NH1 a:ARG366 3.1 94.4 1.0
CZ b:ARG212 3.4 96.7 1.0
O b:HOH1102 3.6 0.5 1.0
CZ a:ARG366 3.7 94.4 1.0
NE a:ARG366 3.8 94.4 1.0
O b:HOH1103 3.9 94.0 1.0
NH1 b:ARG212 4.0 96.7 1.0
O1B b:ADP1000 4.0 96.1 1.0
O b:HOH1101 4.3 99.7 1.0
MG b:MG1001 4.4 90.5 1.0
NE b:ARG212 4.4 96.7 1.0
NZ b:LYS184 4.6 85.8 1.0
NH2 b:ARG269 4.6 88.1 1.0
NH2 a:ARG366 4.8 94.4 1.0
CD a:ARG366 5.0 94.4 1.0

Fluorine binding site 5 out of 15 in 7add

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Fluorine binding site 5 out of 15 in the Transcription Termination Intermediate Complex Iiia


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 5 of Transcription Termination Intermediate Complex Iiia within 5.0Å range:
probe atom residue distance (Å) B Occ
b:F1002

b:0.9
occ:1.00
 F2 b:BEF1002 0.0 0.9 1.0
BE b:BEF1002 1.6 0.9 1.0
O1B b:ADP1000 2.1 96.1 1.0
F3 b:BEF1002 2.5 0.9 1.0
F1 b:BEF1002 2.6 0.9 1.0
NZ b:LYS184 3.1 85.8 1.0
PB b:ADP1000 3.6 96.1 1.0
N b:LYS181 3.8 88.9 1.0
NH1 a:ARG366 3.8 94.4 1.0
CA b:PRO180 3.8 89.4 1.0
MG b:MG1001 3.9 90.5 1.0
CB b:PRO180 4.1 89.4 1.0
C b:PRO180 4.3 89.4 1.0
O3B b:ADP1000 4.3 96.1 1.0
O b:HOH1103 4.4 94.0 1.0
O2B b:ADP1000 4.4 96.1 1.0
NH2 b:ARG212 4.5 96.7 1.0
NE a:ARG366 4.5 94.4 1.0
O3A b:ADP1000 4.5 96.1 1.0
CE b:LYS184 4.6 85.8 1.0
CZ a:ARG366 4.6 94.4 1.0
O b:HOH1102 4.7 0.5 1.0
CA b:LYS181 4.8 88.9 1.0
N b:ALA182 4.9 92.5 1.0

Fluorine binding site 6 out of 15 in 7add

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Fluorine binding site 6 out of 15 in the Transcription Termination Intermediate Complex Iiia


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 6 of Transcription Termination Intermediate Complex Iiia within 5.0Å range:
probe atom residue distance (Å) B Occ
b:F1002

b:0.9
occ:1.00
 F3 b:BEF1002 0.0 0.9 1.0
BE b:BEF1002 1.5 0.9 1.0
MG b:MG1001 2.1 90.5 1.0
O1B b:ADP1000 2.2 96.1 1.0
O b:HOH1102 2.4 0.5 1.0
F2 b:BEF1002 2.5 0.9 1.0
F1 b:BEF1002 2.5 0.9 1.0
O b:HOH1101 2.7 99.7 1.0
O b:HOH1103 3.0 94.0 1.0
PB b:ADP1000 3.2 96.1 1.0
O2B b:ADP1000 3.3 96.1 1.0
NH2 b:ARG212 3.4 96.7 1.0
O1A b:ADP1000 3.4 96.1 1.0
NE a:ARG366 3.7 94.4 1.0
O3A b:ADP1000 3.8 96.1 1.0
NH1 b:ARG212 3.9 96.7 1.0
NZ b:LYS184 4.0 85.8 1.0
PA b:ADP1000 4.1 96.1 1.0
OG1 b:THR185 4.1 84.4 1.0
CZ b:ARG212 4.1 96.7 1.0
NH1 a:ARG366 4.3 94.4 1.0
CZ a:ARG366 4.5 94.4 1.0
CD a:ARG366 4.6 94.4 1.0
O3B b:ADP1000 4.6 96.1 1.0
O2A b:ADP1000 4.7 96.1 1.0

Fluorine binding site 7 out of 15 in 7add

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Fluorine binding site 7 out of 15 in the Transcription Termination Intermediate Complex Iiia


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 7 of Transcription Termination Intermediate Complex Iiia within 5.0Å range:
probe atom residue distance (Å) B Occ
c:F503

b:0.7
occ:1.00
 F1 c:BEF503 0.0 0.7 1.0
BE c:BEF503 1.5 0.7 1.0
NH2 c:ARG212 2.2 87.3 1.0
F3 c:BEF503 2.5 0.7 1.0
F2 c:BEF503 2.6 0.7 1.0
NH1 b:ARG366 3.1 92.4 1.0
O c:HOH1102 3.3 98.4 1.0
CZ c:ARG212 3.4 87.3 1.0
CZ b:ARG366 3.7 92.4 1.0
NE b:ARG366 3.7 92.4 1.0
O c:HOH1101 3.9 96.8 1.0
NH1 c:ARG212 4.0 87.3 1.0
O2B c:ADP501 4.0 99.1 1.0
O c:HOH1103 4.0 94.6 1.0
NE c:ARG212 4.5 87.3 1.0
NH2 c:ARG269 4.5 84.1 1.0
MG c:MG502 4.5 88.4 1.0
NZ c:LYS184 4.5 83.6 1.0
NH2 b:ARG366 4.7 92.4 1.0
CD b:ARG366 4.9 92.4 1.0

Fluorine binding site 8 out of 15 in 7add

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Fluorine binding site 8 out of 15 in the Transcription Termination Intermediate Complex Iiia


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 8 of Transcription Termination Intermediate Complex Iiia within 5.0Å range:
probe atom residue distance (Å) B Occ
c:F503

b:0.7
occ:1.00
 F2 c:BEF503 0.0 0.7 1.0
BE c:BEF503 1.6 0.7 1.0
O2B c:ADP501 2.2 99.1 1.0
F3 c:BEF503 2.5 0.7 1.0
F1 c:BEF503 2.6 0.7 1.0
NZ c:LYS184 2.7 83.6 1.0
PB c:ADP501 3.7 99.1 1.0
CA c:PRO180 3.9 86.4 1.0
NH1 b:ARG366 4.0 92.4 1.0
MG c:MG502 4.0 88.4 1.0
N c:LYS181 4.1 96.6 1.0
CE c:LYS184 4.2 83.6 1.0
CB c:PRO180 4.2 86.4 1.0
O c:HOH1103 4.3 94.6 1.0
O1B c:ADP501 4.3 99.1 1.0
O c:HOH1101 4.4 96.8 1.0
O3B c:ADP501 4.5 99.1 1.0
C c:PRO180 4.5 86.4 1.0
NH2 c:ARG212 4.6 87.3 1.0
O3A c:ADP501 4.6 99.1 1.0
O c:HOH1102 4.6 98.4 1.0
NE b:ARG366 4.8 92.4 1.0
CZ b:ARG366 4.8 92.4 1.0
CD c:LYS184 4.9 83.6 1.0
CD2 c:LEU320 5.0 77.6 1.0
N c:PRO180 5.0 86.4 1.0

Fluorine binding site 9 out of 15 in 7add

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Fluorine binding site 9 out of 15 in the Transcription Termination Intermediate Complex Iiia


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 9 of Transcription Termination Intermediate Complex Iiia within 5.0Å range:
probe atom residue distance (Å) B Occ
c:F503

b:0.7
occ:1.00
 F3 c:BEF503 0.0 0.7 1.0
BE c:BEF503 1.5 0.7 1.0
MG c:MG502 2.0 88.4 1.0
O c:HOH1101 2.2 96.8 1.0
O c:HOH1103 2.3 94.6 1.0
O c:HOH1102 2.3 98.4 1.0
F2 c:BEF503 2.5 0.7 1.0
F1 c:BEF503 2.5 0.7 1.0
O2B c:ADP501 2.6 99.1 1.0
O1B c:ADP501 3.3 99.1 1.0
NZ c:LYS184 3.4 83.6 1.0
PB c:ADP501 3.5 99.1 1.0
NH2 c:ARG212 3.6 87.3 1.0
OG1 c:THR185 3.9 86.1 1.0
O2A c:ADP501 4.0 99.1 1.0
NH1 c:ARG212 4.1 87.3 1.0
O3A c:ADP501 4.1 99.1 1.0
NE b:ARG366 4.3 92.4 1.0
CZ c:ARG212 4.3 87.3 1.0
PA c:ADP501 4.5 99.1 1.0
CE c:LYS184 4.6 83.6 1.0
NH1 b:ARG366 4.7 92.4 1.0
O3B c:ADP501 4.8 99.1 1.0
O1A c:ADP501 4.9 99.1 1.0
OE1 c:GLU211 4.9 90.3 1.0
CZ b:ARG366 4.9 92.4 1.0

Fluorine binding site 10 out of 15 in 7add

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Fluorine binding site 10 out of 15 in the Transcription Termination Intermediate Complex Iiia


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 10 of Transcription Termination Intermediate Complex Iiia within 5.0Å range:
probe atom residue distance (Å) B Occ
c:F504

b:0.5
occ:1.00
 F1 c:BEF504 0.0 0.5 1.0
BE c:BEF504 1.5 0.5 1.0
NH2 d:ARG212 2.2 0.6 1.0
F3 c:BEF504 2.5 0.5 1.0
F2 c:BEF504 2.6 0.5 1.0
NH1 c:ARG366 2.7 95.1 1.0
NE c:ARG366 3.3 95.1 1.0
CZ c:ARG366 3.3 95.1 1.0
CZ d:ARG212 3.5 0.6 1.0
O d:HOH1103 3.6 0.8 1.0
O2B d:ADP1000 3.9 0.4 1.0
NH1 d:ARG212 4.0 0.6 1.0
O d:HOH1101 4.2 0.3 1.0
MG d:MG1001 4.2 97.5 1.0
NH2 c:ARG366 4.4 95.1 1.0
CD c:ARG366 4.5 95.1 1.0
NE d:ARG212 4.5 0.6 1.0
NZ d:LYS184 4.5 93.4 1.0
O d:HOH1102 4.7 0.8 1.0
NH2 d:ARG269 5.0 87.0 1.0

Reference:

N.Said, T.Hilal, N.D.Sunday, A.Khatri, J.Buerger, T.Mielke, B.Loll, R.Sen, I.Artsimovitch, M.C.Wahl. Snapshots Along A Factor-Mediated, Elongation Complex-Dependent Path to Transcription Termination To Be Published.
Page generated: Sun Dec 13 13:48:46 2020

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