Fluorine in PDB 7ade: Transcription Termination Complex Iva
Enzymatic activity of Transcription Termination Complex Iva
All present enzymatic activity of Transcription Termination Complex Iva:
2.7.7.6;
Other elements in 7ade:
The structure of Transcription Termination Complex Iva also contains other interesting chemical elements:
Fluorine Binding Sites:
Pages:
>>> Page 1 <<<
Page 2, Binding sites: 11 -
15;
Binding sites:
The binding sites of Fluorine atom in the Transcription Termination Complex Iva
(pdb code 7ade). This binding sites where shown within
5.0 Angstroms radius around Fluorine atom.
In total 15 binding sites of Fluorine where determined in the
Transcription Termination Complex Iva, PDB code: 7ade:
Jump to Fluorine binding site number:
1;
2;
3;
4;
5;
6;
7;
8;
9;
10;
Fluorine binding site 1 out
of 15 in 7ade
Go back to
Fluorine Binding Sites List in 7ade
Fluorine binding site 1 out
of 15 in the Transcription Termination Complex Iva
Mono view
Stereo pair view
|
A full contact list of Fluorine with other atoms in the F binding
site number 1 of Transcription Termination Complex Iva within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
a:F1002
b:0.8
occ:1.00
|
F1
|
a:BEF1002
|
0.0
|
0.8
|
1.0
|
BE
|
a:BEF1002
|
1.5
|
0.8
|
1.0
|
F3
|
a:BEF1002
|
2.5
|
0.8
|
1.0
|
F2
|
a:BEF1002
|
2.6
|
0.8
|
1.0
|
NH1
|
a:ARG212
|
3.2
|
0.3
|
1.0
|
NH2
|
a:ARG212
|
3.8
|
0.3
|
1.0
|
CZ
|
a:ARG212
|
3.9
|
0.3
|
1.0
|
O1B
|
a:ADP1000
|
4.0
|
0.5
|
1.0
|
O
|
a:HOH1101
|
4.1
|
1.0
|
1.0
|
MG
|
a:MG1001
|
4.4
|
0.1
|
1.0
|
NH2
|
f:ARG366
|
4.4
|
0.1
|
1.0
|
CD1
|
a:LEU320
|
4.4
|
0.9
|
1.0
|
O
|
a:HOH1102
|
4.5
|
0.7
|
1.0
|
NZ
|
a:LYS184
|
4.6
|
0.2
|
1.0
|
O
|
a:HOH1103
|
4.7
|
0.4
|
1.0
|
O
|
f:GLY337
|
4.8
|
0.1
|
1.0
|
CB
|
a:PRO180
|
5.0
|
1.0
|
1.0
|
|
Fluorine binding site 2 out
of 15 in 7ade
Go back to
Fluorine Binding Sites List in 7ade
Fluorine binding site 2 out
of 15 in the Transcription Termination Complex Iva
Mono view
Stereo pair view
|
A full contact list of Fluorine with other atoms in the F binding
site number 2 of Transcription Termination Complex Iva within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
a:F1002
b:0.8
occ:1.00
|
F2
|
a:BEF1002
|
0.0
|
0.8
|
1.0
|
BE
|
a:BEF1002
|
1.6
|
0.8
|
1.0
|
O1B
|
a:ADP1000
|
2.2
|
0.5
|
1.0
|
F3
|
a:BEF1002
|
2.5
|
0.8
|
1.0
|
F1
|
a:BEF1002
|
2.6
|
0.8
|
1.0
|
PB
|
a:ADP1000
|
3.2
|
0.5
|
1.0
|
O3B
|
a:ADP1000
|
3.3
|
0.5
|
1.0
|
NZ
|
a:LYS184
|
3.3
|
0.2
|
1.0
|
MG
|
a:MG1001
|
3.3
|
0.1
|
1.0
|
CE
|
a:LYS184
|
3.3
|
0.2
|
1.0
|
O
|
a:HOH1102
|
4.0
|
0.7
|
1.0
|
O3A
|
a:ADP1000
|
4.1
|
0.5
|
1.0
|
CA
|
a:PRO180
|
4.2
|
1.0
|
1.0
|
O
|
a:HOH1103
|
4.3
|
0.4
|
1.0
|
CG
|
a:LYS184
|
4.3
|
0.2
|
1.0
|
O
|
a:HOH1101
|
4.3
|
1.0
|
1.0
|
N
|
a:LYS181
|
4.4
|
0.8
|
1.0
|
CD
|
a:LYS184
|
4.4
|
0.2
|
1.0
|
O2B
|
a:ADP1000
|
4.5
|
0.5
|
1.0
|
CD1
|
a:LEU320
|
4.5
|
0.9
|
1.0
|
CB
|
a:PRO180
|
4.7
|
1.0
|
1.0
|
C
|
a:PRO180
|
4.8
|
1.0
|
1.0
|
NH2
|
a:ARG212
|
4.9
|
0.3
|
1.0
|
O1A
|
a:ADP1000
|
4.9
|
0.5
|
1.0
|
|
Fluorine binding site 3 out
of 15 in 7ade
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Fluorine Binding Sites List in 7ade
Fluorine binding site 3 out
of 15 in the Transcription Termination Complex Iva
Mono view
Stereo pair view
|
A full contact list of Fluorine with other atoms in the F binding
site number 3 of Transcription Termination Complex Iva within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
a:F1002
b:0.8
occ:1.00
|
F3
|
a:BEF1002
|
0.0
|
0.8
|
1.0
|
BE
|
a:BEF1002
|
1.5
|
0.8
|
1.0
|
MG
|
a:MG1001
|
2.2
|
0.1
|
1.0
|
O1B
|
a:ADP1000
|
2.2
|
0.5
|
1.0
|
O
|
a:HOH1103
|
2.2
|
0.4
|
1.0
|
O
|
a:HOH1101
|
2.3
|
1.0
|
1.0
|
NH2
|
a:ARG212
|
2.5
|
0.3
|
1.0
|
F2
|
a:BEF1002
|
2.5
|
0.8
|
1.0
|
F1
|
a:BEF1002
|
2.5
|
0.8
|
1.0
|
O
|
a:HOH1102
|
3.2
|
0.7
|
1.0
|
CZ
|
a:ARG212
|
3.4
|
0.3
|
1.0
|
NH1
|
a:ARG212
|
3.5
|
0.3
|
1.0
|
PB
|
a:ADP1000
|
3.7
|
0.5
|
1.0
|
O1A
|
a:ADP1000
|
3.7
|
0.5
|
1.0
|
NH2
|
f:ARG366
|
4.0
|
0.1
|
1.0
|
OE2
|
a:GLU211
|
4.1
|
0.6
|
1.0
|
OG1
|
a:THR185
|
4.1
|
0.5
|
1.0
|
O3A
|
a:ADP1000
|
4.1
|
0.5
|
1.0
|
NZ
|
a:LYS184
|
4.2
|
0.2
|
1.0
|
OE2
|
a:GLU215
|
4.2
|
0.3
|
1.0
|
PA
|
a:ADP1000
|
4.3
|
0.5
|
1.0
|
O2B
|
a:ADP1000
|
4.5
|
0.5
|
1.0
|
O3B
|
a:ADP1000
|
4.6
|
0.5
|
1.0
|
O2A
|
a:ADP1000
|
4.6
|
0.5
|
1.0
|
NE
|
a:ARG212
|
4.7
|
0.3
|
1.0
|
CZ
|
f:ARG366
|
4.8
|
0.1
|
1.0
|
NH1
|
f:ARG366
|
4.9
|
0.1
|
1.0
|
|
Fluorine binding site 4 out
of 15 in 7ade
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Fluorine Binding Sites List in 7ade
Fluorine binding site 4 out
of 15 in the Transcription Termination Complex Iva
Mono view
Stereo pair view
|
A full contact list of Fluorine with other atoms in the F binding
site number 4 of Transcription Termination Complex Iva within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
b:F1002
b:93.5
occ:1.00
|
F1
|
b:BEF1002
|
0.0
|
93.5
|
1.0
|
BE
|
b:BEF1002
|
1.5
|
93.5
|
1.0
|
F3
|
b:BEF1002
|
2.5
|
93.5
|
1.0
|
F2
|
b:BEF1002
|
2.6
|
93.5
|
1.0
|
O2B
|
b:ADP1000
|
3.9
|
99.3
|
1.0
|
CB
|
b:PRO180
|
4.0
|
79.6
|
1.0
|
NH1
|
b:ARG212
|
4.1
|
96.8
|
1.0
|
NH2
|
a:ARG366
|
4.1
|
91.1
|
1.0
|
CA
|
b:PRO180
|
4.3
|
79.6
|
1.0
|
NH2
|
b:ARG212
|
4.5
|
96.8
|
1.0
|
CD1
|
b:LEU320
|
4.5
|
78.6
|
1.0
|
O
|
b:HOH1101
|
4.6
|
83.9
|
1.0
|
O
|
b:HOH1103
|
4.7
|
92.4
|
1.0
|
CG
|
b:PRO180
|
4.7
|
79.6
|
1.0
|
MG
|
b:MG1001
|
4.7
|
88.4
|
1.0
|
CZ
|
b:ARG212
|
4.7
|
96.8
|
1.0
|
CD2
|
b:LEU320
|
4.7
|
78.6
|
1.0
|
N
|
b:LYS181
|
4.8
|
86.2
|
1.0
|
NZ
|
b:LYS184
|
5.0
|
80.4
|
1.0
|
|
Fluorine binding site 5 out
of 15 in 7ade
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Fluorine Binding Sites List in 7ade
Fluorine binding site 5 out
of 15 in the Transcription Termination Complex Iva
Mono view
Stereo pair view
|
A full contact list of Fluorine with other atoms in the F binding
site number 5 of Transcription Termination Complex Iva within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
b:F1002
b:93.5
occ:1.00
|
F2
|
b:BEF1002
|
0.0
|
93.5
|
1.0
|
BE
|
b:BEF1002
|
1.6
|
93.5
|
1.0
|
F3
|
b:BEF1002
|
2.5
|
93.5
|
1.0
|
F1
|
b:BEF1002
|
2.6
|
93.5
|
1.0
|
O2B
|
b:ADP1000
|
2.8
|
99.3
|
1.0
|
O1B
|
b:ADP1000
|
3.2
|
99.3
|
1.0
|
CA
|
b:PRO180
|
3.3
|
79.6
|
1.0
|
CE
|
b:LYS184
|
3.4
|
80.4
|
1.0
|
PB
|
b:ADP1000
|
3.5
|
99.3
|
1.0
|
NZ
|
b:LYS184
|
3.7
|
80.4
|
1.0
|
N
|
b:LYS181
|
3.8
|
86.2
|
1.0
|
C
|
b:PRO180
|
4.0
|
79.6
|
1.0
|
CB
|
b:PRO180
|
4.0
|
79.6
|
1.0
|
MG
|
b:MG1001
|
4.1
|
88.4
|
1.0
|
O
|
b:PRO179
|
4.2
|
75.3
|
1.0
|
N
|
b:PRO180
|
4.3
|
79.6
|
1.0
|
CD1
|
b:LEU320
|
4.3
|
78.6
|
1.0
|
CD
|
b:LYS184
|
4.4
|
80.4
|
1.0
|
CG
|
b:LYS184
|
4.4
|
80.4
|
1.0
|
O3A
|
b:ADP1000
|
4.6
|
99.3
|
1.0
|
CG
|
b:LEU320
|
4.6
|
78.6
|
1.0
|
C
|
b:PRO179
|
4.7
|
75.3
|
1.0
|
O3B
|
b:ADP1000
|
4.7
|
99.3
|
1.0
|
CD2
|
b:LEU320
|
4.8
|
78.6
|
1.0
|
N
|
b:ALA182
|
4.8
|
91.0
|
1.0
|
CG
|
b:PRO180
|
4.8
|
79.6
|
1.0
|
O
|
b:HOH1103
|
4.8
|
92.4
|
1.0
|
O
|
b:HOH1102
|
4.8
|
68.3
|
1.0
|
CA
|
b:LYS181
|
5.0
|
86.2
|
1.0
|
|
Fluorine binding site 6 out
of 15 in 7ade
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Fluorine Binding Sites List in 7ade
Fluorine binding site 6 out
of 15 in the Transcription Termination Complex Iva
Mono view
Stereo pair view
|
A full contact list of Fluorine with other atoms in the F binding
site number 6 of Transcription Termination Complex Iva within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
b:F1002
b:93.5
occ:1.00
|
F3
|
b:BEF1002
|
0.0
|
93.5
|
1.0
|
BE
|
b:BEF1002
|
1.5
|
93.5
|
1.0
|
O2B
|
b:ADP1000
|
2.2
|
99.3
|
1.0
|
MG
|
b:MG1001
|
2.2
|
88.4
|
1.0
|
F2
|
b:BEF1002
|
2.5
|
93.5
|
1.0
|
F1
|
b:BEF1002
|
2.5
|
93.5
|
1.0
|
O
|
b:HOH1101
|
2.6
|
83.9
|
1.0
|
O
|
b:HOH1103
|
2.9
|
92.4
|
1.0
|
O
|
b:HOH1102
|
2.9
|
68.3
|
1.0
|
NZ
|
b:LYS184
|
3.1
|
80.4
|
1.0
|
NH2
|
b:ARG212
|
3.5
|
96.8
|
1.0
|
PB
|
b:ADP1000
|
3.6
|
99.3
|
1.0
|
CE
|
b:LYS184
|
3.9
|
80.4
|
1.0
|
NH1
|
b:ARG212
|
4.0
|
96.8
|
1.0
|
CZ
|
b:ARG212
|
4.2
|
96.8
|
1.0
|
O1B
|
b:ADP1000
|
4.3
|
99.3
|
1.0
|
OG1
|
b:THR185
|
4.3
|
85.0
|
1.0
|
O3B
|
b:ADP1000
|
4.4
|
99.3
|
1.0
|
OE2
|
b:GLU211
|
4.4
|
98.0
|
1.0
|
O3A
|
b:ADP1000
|
4.6
|
99.3
|
1.0
|
NH2
|
a:ARG366
|
4.7
|
91.1
|
1.0
|
CG
|
b:LYS184
|
4.8
|
80.4
|
1.0
|
CD1
|
b:LEU320
|
4.8
|
78.6
|
1.0
|
O1A
|
b:ADP1000
|
4.8
|
99.3
|
1.0
|
CD
|
b:LYS184
|
5.0
|
80.4
|
1.0
|
|
Fluorine binding site 7 out
of 15 in 7ade
Go back to
Fluorine Binding Sites List in 7ade
Fluorine binding site 7 out
of 15 in the Transcription Termination Complex Iva
Mono view
Stereo pair view
|
A full contact list of Fluorine with other atoms in the F binding
site number 7 of Transcription Termination Complex Iva within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
c:F1002
b:0.9
occ:1.00
|
F1
|
c:BEF1002
|
0.0
|
0.9
|
1.0
|
BE
|
c:BEF1002
|
1.5
|
0.9
|
1.0
|
F3
|
c:BEF1002
|
2.5
|
0.9
|
1.0
|
F2
|
c:BEF1002
|
2.6
|
0.9
|
1.0
|
NH1
|
c:ARG212
|
3.2
|
92.6
|
1.0
|
O2B
|
c:ADP1000
|
3.9
|
0.9
|
1.0
|
NH2
|
c:ARG212
|
3.9
|
92.6
|
1.0
|
CZ
|
c:ARG212
|
4.0
|
92.6
|
1.0
|
CD1
|
c:LEU320
|
4.3
|
86.7
|
1.0
|
O
|
c:HOH1101
|
4.3
|
0.5
|
1.0
|
NH2
|
b:ARG366
|
4.3
|
93.2
|
1.0
|
MG
|
c:MG1001
|
4.5
|
0.9
|
1.0
|
NZ
|
c:LYS184
|
4.6
|
0.0
|
1.0
|
O
|
b:GLY337
|
4.8
|
88.5
|
1.0
|
CA
|
b:GLY337
|
4.8
|
88.5
|
1.0
|
O
|
c:HOH1102
|
4.9
|
97.6
|
1.0
|
CD2
|
c:LEU320
|
4.9
|
86.7
|
1.0
|
CB
|
c:PRO180
|
5.0
|
85.8
|
1.0
|
|
Fluorine binding site 8 out
of 15 in 7ade
Go back to
Fluorine Binding Sites List in 7ade
Fluorine binding site 8 out
of 15 in the Transcription Termination Complex Iva
Mono view
Stereo pair view
|
A full contact list of Fluorine with other atoms in the F binding
site number 8 of Transcription Termination Complex Iva within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
c:F1002
b:0.9
occ:1.00
|
F2
|
c:BEF1002
|
0.0
|
0.9
|
1.0
|
BE
|
c:BEF1002
|
1.6
|
0.9
|
1.0
|
O2B
|
c:ADP1000
|
2.3
|
0.9
|
1.0
|
F3
|
c:BEF1002
|
2.5
|
0.9
|
1.0
|
F1
|
c:BEF1002
|
2.6
|
0.9
|
1.0
|
PB
|
c:ADP1000
|
3.3
|
0.9
|
1.0
|
NZ
|
c:LYS184
|
3.3
|
0.0
|
1.0
|
MG
|
c:MG1001
|
3.3
|
0.9
|
1.0
|
CE
|
c:LYS184
|
3.3
|
0.0
|
1.0
|
O1B
|
c:ADP1000
|
3.5
|
0.9
|
1.0
|
CA
|
c:PRO180
|
4.0
|
85.8
|
1.0
|
O3B
|
c:ADP1000
|
4.1
|
0.9
|
1.0
|
O
|
c:HOH1102
|
4.2
|
97.6
|
1.0
|
CD1
|
c:LEU320
|
4.3
|
86.7
|
1.0
|
N
|
c:LYS181
|
4.3
|
98.9
|
1.0
|
O
|
c:HOH1101
|
4.4
|
0.5
|
1.0
|
CD
|
c:LYS184
|
4.5
|
0.0
|
1.0
|
CG
|
c:LYS184
|
4.5
|
0.0
|
1.0
|
CB
|
c:PRO180
|
4.5
|
85.8
|
1.0
|
O3A
|
c:ADP1000
|
4.6
|
0.9
|
1.0
|
O
|
c:HOH1103
|
4.6
|
0.9
|
1.0
|
C
|
c:PRO180
|
4.7
|
85.8
|
1.0
|
CG
|
c:LEU320
|
4.8
|
86.7
|
1.0
|
O
|
c:PRO179
|
5.0
|
93.2
|
1.0
|
|
Fluorine binding site 9 out
of 15 in 7ade
Go back to
Fluorine Binding Sites List in 7ade
Fluorine binding site 9 out
of 15 in the Transcription Termination Complex Iva
Mono view
Stereo pair view
|
A full contact list of Fluorine with other atoms in the F binding
site number 9 of Transcription Termination Complex Iva within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
c:F1002
b:0.9
occ:1.00
|
F3
|
c:BEF1002
|
0.0
|
0.9
|
1.0
|
BE
|
c:BEF1002
|
1.5
|
0.9
|
1.0
|
MG
|
c:MG1001
|
2.2
|
0.9
|
1.0
|
O2B
|
c:ADP1000
|
2.2
|
0.9
|
1.0
|
O
|
c:HOH1101
|
2.3
|
0.5
|
1.0
|
F2
|
c:BEF1002
|
2.5
|
0.9
|
1.0
|
F1
|
c:BEF1002
|
2.5
|
0.9
|
1.0
|
O
|
c:HOH1103
|
2.5
|
0.9
|
1.0
|
NH2
|
c:ARG212
|
2.6
|
92.6
|
1.0
|
O
|
c:HOH1102
|
3.3
|
97.6
|
1.0
|
CZ
|
c:ARG212
|
3.5
|
92.6
|
1.0
|
NH1
|
c:ARG212
|
3.5
|
92.6
|
1.0
|
PB
|
c:ADP1000
|
3.5
|
0.9
|
1.0
|
NH2
|
b:ARG366
|
3.7
|
93.2
|
1.0
|
O3B
|
c:ADP1000
|
3.9
|
0.9
|
1.0
|
O2A
|
c:ADP1000
|
3.9
|
0.9
|
1.0
|
NZ
|
c:LYS184
|
4.1
|
0.0
|
1.0
|
OE2
|
c:GLU211
|
4.1
|
0.6
|
1.0
|
OG1
|
c:THR185
|
4.2
|
1.0
|
1.0
|
OE2
|
c:GLU215
|
4.4
|
0.8
|
1.0
|
O3A
|
c:ADP1000
|
4.4
|
0.9
|
1.0
|
O1B
|
c:ADP1000
|
4.6
|
0.9
|
1.0
|
PA
|
c:ADP1000
|
4.6
|
0.9
|
1.0
|
CZ
|
b:ARG366
|
4.7
|
93.2
|
1.0
|
NE
|
c:ARG212
|
4.7
|
92.6
|
1.0
|
NH1
|
b:ARG366
|
4.8
|
93.2
|
1.0
|
CE
|
c:LYS184
|
4.9
|
0.0
|
1.0
|
|
Fluorine binding site 10 out
of 15 in 7ade
Go back to
Fluorine Binding Sites List in 7ade
Fluorine binding site 10 out
of 15 in the Transcription Termination Complex Iva
Mono view
Stereo pair view
|
A full contact list of Fluorine with other atoms in the F binding
site number 10 of Transcription Termination Complex Iva within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
d:F1002
b:0.0
occ:1.00
|
F1
|
d:BEF1002
|
0.0
|
0.0
|
1.0
|
BE
|
d:BEF1002
|
1.5
|
0.0
|
1.0
|
NH1
|
d:ARG212
|
2.5
|
0.2
|
1.0
|
F3
|
d:BEF1002
|
2.5
|
0.0
|
1.0
|
F2
|
d:BEF1002
|
2.6
|
0.0
|
1.0
|
NH2
|
d:ARG212
|
3.1
|
0.2
|
1.0
|
CZ
|
d:ARG212
|
3.1
|
0.2
|
1.0
|
NH2
|
c:ARG366
|
3.4
|
97.3
|
1.0
|
O2B
|
d:ADP1000
|
4.0
|
0.5
|
1.0
|
O
|
d:HOH1102
|
4.1
|
0.8
|
1.0
|
O
|
d:HOH1101
|
4.2
|
1.0
|
1.0
|
NH1
|
c:ARG366
|
4.3
|
97.3
|
1.0
|
O
|
c:GLY337
|
4.3
|
89.1
|
1.0
|
CZ
|
c:ARG366
|
4.3
|
97.3
|
1.0
|
NE
|
d:ARG212
|
4.3
|
0.2
|
1.0
|
CA
|
c:GLY337
|
4.4
|
89.1
|
1.0
|
MG
|
d:MG1001
|
4.5
|
0.0
|
1.0
|
C
|
c:GLY337
|
4.7
|
89.1
|
1.0
|
OE2
|
d:GLU211
|
4.9
|
0.0
|
1.0
|
|
Reference:
N.Said,
T.Hilal,
N.D.Sunday,
A.Khatri,
J.Buerger,
T.Mielke,
B.Loll,
R.Sen,
I.Artsimovitch,
M.C.Wahl.
Snapshots Along A Factor-Mediated, Elongation Complex-Dependent Path to Transcription Termination To Be Published.
Page generated: Fri Aug 2 05:35:41 2024
|