Fluorine in PDB 7axx: Structure of WDR5:Cs-VIP8 Crystal After Illumination at 405 Nm and Room Temperature

Protein crystallography data

The structure of Structure of WDR5:Cs-VIP8 Crystal After Illumination at 405 Nm and Room Temperature, PDB code: 7axx was solved by L.Werel, L.-O.Essen, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 44.01 / 1.79
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 46.03, 46.9, 126.32, 90, 90, 90
R / Rfree (%) 16.6 / 21.4

Fluorine Binding Sites:

The binding sites of Fluorine atom in the Structure of WDR5:Cs-VIP8 Crystal After Illumination at 405 Nm and Room Temperature (pdb code 7axx). This binding sites where shown within 5.0 Angstroms radius around Fluorine atom.
In total 4 binding sites of Fluorine where determined in the Structure of WDR5:Cs-VIP8 Crystal After Illumination at 405 Nm and Room Temperature, PDB code: 7axx:
Jump to Fluorine binding site number: 1; 2; 3; 4;

Fluorine binding site 1 out of 4 in 7axx

Go back to Fluorine Binding Sites List in 7axx
Fluorine binding site 1 out of 4 in the Structure of WDR5:Cs-VIP8 Crystal After Illumination at 405 Nm and Room Temperature


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 1 of Structure of WDR5:Cs-VIP8 Crystal After Illumination at 405 Nm and Room Temperature within 5.0Å range:
probe atom residue distance (Å) B Occ
B:F103

b:55.5
occ:1.00
FA2 B:S7Z103 0.0 55.5 1.0
CA2 B:S7Z103 1.4 52.4 1.0
CA3 B:S7Z103 2.3 49.6 1.0
CA1 B:S7Z103 2.4 52.3 1.0
NA1 B:S7Z103 2.9 55.5 1.0
CA4 B:S7Z103 3.6 46.6 1.0
CA6 B:S7Z103 3.7 49.8 1.0
FB2 B:S7Z103 3.8 56.9 1.0
NB1 B:S7Z103 3.9 56.0 1.0
CA5 B:S7Z103 4.1 47.0 1.0
CB2 B:S7Z103 4.6 54.2 1.0
CB1 B:S7Z103 4.7 54.5 1.0
FA6 B:S7Z103 4.8 50.2 1.0
CA B:S7Z103 4.8 43.6 1.0

Fluorine binding site 2 out of 4 in 7axx

Go back to Fluorine Binding Sites List in 7axx
Fluorine binding site 2 out of 4 in the Structure of WDR5:Cs-VIP8 Crystal After Illumination at 405 Nm and Room Temperature


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 2 of Structure of WDR5:Cs-VIP8 Crystal After Illumination at 405 Nm and Room Temperature within 5.0Å range:
probe atom residue distance (Å) B Occ
B:F103

b:50.2
occ:1.00
FA6 B:S7Z103 0.0 50.2 1.0
CA6 B:S7Z103 1.4 49.8 1.0
CA5 B:S7Z103 2.4 47.0 1.0
CA1 B:S7Z103 2.4 52.3 1.0
NA1 B:S7Z103 2.9 55.5 1.0
FB6 B:S7Z103 3.1 54.7 1.0
CB6 B:S7Z103 3.1 53.3 1.0
CB1 B:S7Z103 3.2 54.5 1.0
NB1 B:S7Z103 3.3 56.0 1.0
CD1 B:DPN5 3.4 41.2 1.0
CE1 B:DPN5 3.4 42.4 1.0
CA2 B:S7Z103 3.7 52.4 1.0
CA4 B:S7Z103 3.7 46.6 1.0
CB5 B:S7Z103 3.9 51.6 1.0
CB2 B:S7Z103 4.1 54.2 1.0
CA3 B:S7Z103 4.2 49.6 1.0
CG B:DPN5 4.2 39.7 1.0
CZ B:DPN5 4.2 42.0 1.0
CB4 B:S7Z103 4.6 51.2 1.0
CB3 B:S7Z103 4.7 52.3 1.0
FB2 B:S7Z103 4.8 56.9 1.0
FA2 B:S7Z103 4.8 55.5 1.0
CD2 B:DPN5 4.8 39.0 1.0
CE2 B:DPN5 4.8 40.2 1.0
CB B:DPN5 4.9 39.3 1.0
CA B:S7Z103 4.9 43.6 1.0

Fluorine binding site 3 out of 4 in 7axx

Go back to Fluorine Binding Sites List in 7axx
Fluorine binding site 3 out of 4 in the Structure of WDR5:Cs-VIP8 Crystal After Illumination at 405 Nm and Room Temperature


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 3 of Structure of WDR5:Cs-VIP8 Crystal After Illumination at 405 Nm and Room Temperature within 5.0Å range:
probe atom residue distance (Å) B Occ
B:F103

b:56.9
occ:1.00
FB2 B:S7Z103 0.0 56.9 1.0
CB2 B:S7Z103 1.4 54.2 1.0
CB1 B:S7Z103 2.4 54.5 1.0
CB3 B:S7Z103 2.4 52.3 1.0
NB1 B:S7Z103 2.7 56.0 1.0
NA1 B:S7Z103 3.3 55.5 1.0
CA1 B:S7Z103 3.5 52.3 1.0
CB6 B:S7Z103 3.6 53.3 1.0
CB4 B:S7Z103 3.7 51.2 1.0
CA2 B:S7Z103 3.7 52.4 1.0
FA2 B:S7Z103 3.8 55.5 1.0
CB5 B:S7Z103 4.1 51.6 1.0
CA6 B:S7Z103 4.3 49.8 1.0
CA3 B:S7Z103 4.6 49.6 1.0
FB6 B:S7Z103 4.7 54.7 1.0
FA6 B:S7Z103 4.8 50.2 1.0
CB B:S7Z103 4.9 50.4 1.0

Fluorine binding site 4 out of 4 in 7axx

Go back to Fluorine Binding Sites List in 7axx
Fluorine binding site 4 out of 4 in the Structure of WDR5:Cs-VIP8 Crystal After Illumination at 405 Nm and Room Temperature


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 4 of Structure of WDR5:Cs-VIP8 Crystal After Illumination at 405 Nm and Room Temperature within 5.0Å range:
probe atom residue distance (Å) B Occ
B:F103

b:54.7
occ:1.00
FB6 B:S7Z103 0.0 54.7 1.0
CB6 B:S7Z103 1.4 53.3 1.0
CB5 B:S7Z103 2.4 51.6 1.0
CB1 B:S7Z103 2.4 54.5 1.0
NB1 B:S7Z103 2.9 56.0 1.0
FA6 B:S7Z103 3.1 50.2 1.0
CB2 B:S7Z103 3.6 54.2 1.0
CB4 B:S7Z103 3.7 51.2 1.0
NA1 B:S7Z103 3.7 55.5 1.0
CA6 B:S7Z103 4.1 49.8 1.0
CB3 B:S7Z103 4.1 52.3 1.0
CA1 B:S7Z103 4.4 52.3 1.0
FB2 B:S7Z103 4.7 56.9 1.0
CD1 B:DPN5 4.9 41.2 1.0
CB B:S7Z103 4.9 50.4 1.0
CE1 B:DPN5 4.9 42.4 1.0

Reference:

L.Albert, J.Nagpal, W.Steinchen, L.Zhang, L.Werel, N.Djokovic, D.Ruzic, M.Hoffarth, J.Xu, J.Kaspareit, F.Abendroth, A.Royant, G.Bange, K.Nikolic, S.Ryu, Y.Dou, L.-O.Essen, O.Vazquez. Bistable Photoswitch Allows in Vivo Control of Hematopoiesis To Be Published.
Page generated: Fri Dec 17 09:10:17 2021

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