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Fluorine in PDB 7ayj: Metallo Beta-Lactamse Vim-1 with A Sulfamoyl Inhibitor.

Protein crystallography data

The structure of Metallo Beta-Lactamse Vim-1 with A Sulfamoyl Inhibitor., PDB code: 7ayj was solved by A.J.M.Farley, I.Ermolovich, K.Calvopina, P.Rabe, J.Brem, C.J.Schofield, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 40.19 / 1.21
Space group P 1 21 1
Cell size a, b, c (Å), α, β, γ (°) 39.533, 67.43, 40.267, 90, 93.51, 90
R / Rfree (%) 17 / 19.5

Other elements in 7ayj:

The structure of Metallo Beta-Lactamse Vim-1 with A Sulfamoyl Inhibitor. also contains other interesting chemical elements:

Zinc (Zn) 2 atoms

Fluorine Binding Sites:

The binding sites of Fluorine atom in the Metallo Beta-Lactamse Vim-1 with A Sulfamoyl Inhibitor. (pdb code 7ayj). This binding sites where shown within 5.0 Angstroms radius around Fluorine atom.
In total only one binding site of Fluorine was determined in the Metallo Beta-Lactamse Vim-1 with A Sulfamoyl Inhibitor., PDB code: 7ayj:

Fluorine binding site 1 out of 1 in 7ayj

Go back to Fluorine Binding Sites List in 7ayj
Fluorine binding site 1 out of 1 in the Metallo Beta-Lactamse Vim-1 with A Sulfamoyl Inhibitor.


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 1 of Metallo Beta-Lactamse Vim-1 with A Sulfamoyl Inhibitor. within 5.0Å range:
probe atom residue distance (Å) B Occ
A:F303

b:41.0
occ:0.75
F A:S9N303 0.0 41.0 0.8
C6 A:S9N303 1.4 26.1 0.8
C7 A:S9N303 2.3 33.1 0.8
C5 A:S9N303 2.3 27.5 0.8
H2 A:S9N303 2.6 33.0 0.8
H3 A:S9N303 2.6 39.7 0.8
O A:HOH641 2.8 36.9 1.0
O A:HOH561 2.8 35.9 1.0
HE1 A:HIS240 2.9 17.9 0.2
O A:HOH669 2.9 40.4 1.0
HA2 A:GLY209 3.4 32.7 1.0
O A:HOH559 3.5 32.5 1.0
CE1 A:HIS240 3.6 14.9 0.2
C8 A:S9N303 3.6 26.8 0.8
C4 A:S9N303 3.6 28.5 0.8
O A:HOH507 3.9 20.6 0.8
NE2 A:HIS240 3.9 19.6 0.2
C3 A:S9N303 4.1 28.4 0.8
CA A:GLY209 4.2 27.2 1.0
HG A:SER207 4.2 47.5 1.0
OG A:SER207 4.3 39.6 1.0
HA3 A:GLY209 4.3 32.7 1.0
O A:HOH661 4.4 34.6 1.0
HE1 A:TYR67 4.4 35.0 1.0
H4 A:S9N303 4.5 32.1 0.8
H1 A:S9N303 4.5 34.2 0.8
H A:GLY209 4.5 33.3 1.0
ND1 A:HIS240 4.7 21.2 0.2
N A:GLY209 4.8 27.8 1.0
HD1 A:TYR67 4.8 28.4 1.0
O A:HOH628 4.8 23.2 0.8
HE1 A:HIS201 5.0 26.2 0.5
HD1 A:HIS240 5.0 25.5 0.2

Reference:

A.J.M.Farley, A.J.M.Farley, I.Ermolovich, K.Calvopina, P.Rabe, J.Brem, C.J.Schofield. N/A N/A.
Page generated: Fri Aug 2 05:50:37 2024

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