Fluorine in PDB 7bh2: Cryo-Em Structure of Kdpfabc in E2PI State with BEF3 and K+

All present enzymatic activity of Cryo-Em Structure of Kdpfabc in E2PI State with BEF3 and K+:
7.2.2.6;

The structure of Cryo-Em Structure of Kdpfabc in E2PI State with BEF3 and K+ also contains other interesting chemical elements:

Potassium	(K)	2 atoms
Magnesium	(Mg)	1 atom

The binding sites of Fluorine atom in the Cryo-Em Structure of Kdpfabc in E2PI State with BEF3 and K+ (pdb code 7bh2). This binding sites where shown within 5.0 Angstroms radius around Fluorine atom.
In total 3 binding sites of Fluorine where determined in the Cryo-Em Structure of Kdpfabc in E2PI State with BEF3 and K+, PDB code: 7bh2:
Jump to Fluorine binding site number: 1; 2; 3;

Fluorine binding site 1 out of 3 in the Cryo-Em Structure of Kdpfabc in E2PI State with BEF3 and K+


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 1 of Cryo-Em Structure of Kdpfabc in E2PI State with BEF3 and K+ within 5.0Å range: probe atom residue distance (Å) B Occ B:F803 b:89.8 occ:1.00 F1 B:BEF803 0.0 89.8 1.0 BE B:BEF803 1.4 89.8 1.0 F2 B:BEF803 2.2 89.8 1.0 F3 B:BEF803 2.3 89.8 1.0 H B:THR309 2.5 90.1 1.0 H B:GLY472 2.6 91.7 1.0 HG22 B:THR471 2.7 90.4 1.0 HB B:THR309 3.0 90.1 1.0 HB3 B:LYS308 3.2 90.3 1.0 H B:LYS308 3.3 90.3 1.0 N B:THR309 3.4 90.1 1.0 HA B:THR471 3.4 90.4 1.0 N B:GLY472 3.4 91.7 1.0 OD1 B:ASP307 3.5 84.8 1.0 OG1 B:THR309 3.5 90.1 1.0 CB B:THR309 3.6 90.1 1.0 CG2 B:THR471 3.7 90.4 1.0 HG1 B:THR309 3.7 90.1 1.0 HE3 B:LYS308 3.7 90.3 1.0 HA3 B:GLY160 3.9 92.5 1.0 HG23 B:THR471 4.0 90.4 1.0 HB2 B:ASP473 4.0 96.3 1.0 N B:LYS308 4.0 90.3 1.0 CA B:THR309 4.1 90.1 1.0 HG21 B:THR471 4.1 90.4 1.0 HA3 B:GLY472 4.1 91.7 1.0 CB B:LYS308 4.1 90.3 1.0 CA B:THR471 4.1 90.4 1.0 CG B:ASP307 4.2 84.8 1.0 C B:THR471 4.2 90.4 1.0 CA B:GLY472 4.2 91.7 1.0 H B:ASP473 4.3 96.3 1.0 C B:LYS308 4.4 90.3 1.0 CA B:LYS308 4.4 90.3 1.0 OD2 B:ASP307 4.4 84.8 1.0 HZ2 B:LYS499 4.5 86.0 1.0 O B:THR309 4.5 90.1 1.0 N B:ASP473 4.5 96.3 1.0 HD21 B:ASN521 4.5 86.3 1.0 CB B:THR471 4.5 90.4 1.0 C B:GLY472 4.6 91.7 1.0 HB2 B:LYS308 4.6 90.3 1.0 MG B:MG802 4.6 77.4 1.0 O B:THR159 4.7 93.6 1.0 CE B:LYS308 4.7 90.3 1.0 CA B:GLY160 4.8 92.5 1.0 C B:THR309 4.8 90.1 1.0 CB B:ASP473 4.9 96.3 1.0 HA B:THR309 4.9 90.1 1.0 CG2 B:THR309 4.9 90.1 1.0 HG2 B:LYS308 4.9 90.3 1.0 HB3 B:ASP473 5.0 96.3 1.0

Fluorine binding site 2 out of 3 in the Cryo-Em Structure of Kdpfabc in E2PI State with BEF3 and K+


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 2 of Cryo-Em Structure of Kdpfabc in E2PI State with BEF3 and K+ within 5.0Å range: probe atom residue distance (Å) B Occ B:F803 b:89.8 occ:1.00 F2 B:BEF803 0.0 89.8 1.0 BE B:BEF803 1.4 89.8 1.0 F3 B:BEF803 2.2 89.8 1.0 F1 B:BEF803 2.2 89.8 1.0 MG B:MG802 2.5 77.4 1.0 OD2 B:ASP307 2.7 84.8 1.0 HB B:THR309 2.8 90.1 1.0 H B:THR309 2.9 90.1 1.0 OD1 B:ASP307 2.9 84.8 1.0 CG B:ASP307 3.1 84.8 1.0 O B:THR309 3.1 90.1 1.0 HA3 B:GLY160 3.2 92.5 1.0 HD21 B:ASN521 3.6 86.3 1.0 N B:THR309 3.6 90.1 1.0 CB B:THR309 3.7 90.1 1.0 H B:LYS308 3.8 90.3 1.0 C B:THR309 3.9 90.1 1.0 CA B:THR309 3.9 90.1 1.0 CA B:GLY160 4.0 92.5 1.0 HA2 B:GLY160 4.1 92.5 1.0 HZ2 B:LYS499 4.2 86.0 1.0 CB B:ASP307 4.4 84.8 1.0 HB3 B:ASP307 4.4 84.8 1.0 H B:GLY472 4.4 91.7 1.0 N B:LYS308 4.4 90.3 1.0 OG1 B:THR309 4.4 90.1 1.0 ND2 B:ASN521 4.4 86.3 1.0 C B:GLY160 4.5 92.5 1.0 HG22 B:THR309 4.6 90.1 1.0 O B:GLY160 4.6 92.5 1.0 HG1 B:THR309 4.6 90.1 1.0 OD1 B:ASN521 4.7 86.3 1.0 O B:THR159 4.7 93.6 1.0 C B:LYS308 4.7 90.3 1.0 CG2 B:THR309 4.7 90.1 1.0 HZ1 B:LYS499 4.7 86.0 1.0 HB3 B:LYS308 4.8 90.3 1.0 NZ B:LYS499 4.8 86.0 1.0 HG22 B:THR471 4.8 90.4 1.0 HA B:THR471 4.8 90.4 1.0 HA B:THR309 4.9 90.1 1.0 OD1 B:ASP518 4.9 83.8 1.0

Fluorine binding site 3 out of 3 in the Cryo-Em Structure of Kdpfabc in E2PI State with BEF3 and K+


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 3 of Cryo-Em Structure of Kdpfabc in E2PI State with BEF3 and K+ within 5.0Å range: probe atom residue distance (Å) B Occ B:F803 b:89.8 occ:1.00 F3 B:BEF803 0.0 89.8 1.0 BE B:BEF803 1.4 89.8 1.0 F2 B:BEF803 2.2 89.8 1.0 F1 B:BEF803 2.3 89.8 1.0 HZ2 B:LYS499 2.3 86.0 1.0 OD1 B:ASP307 2.6 84.8 1.0 HD21 B:ASN521 2.7 86.3 1.0 H B:GLY472 2.9 91.7 1.0 NZ B:LYS499 3.2 86.0 1.0 N B:GLY472 3.2 91.7 1.0 HA3 B:GLY472 3.3 91.7 1.0 HZ1 B:LYS499 3.4 86.0 1.0 HA B:THR471 3.4 90.4 1.0 ND2 B:ASN521 3.4 86.3 1.0 CG B:ASP307 3.4 84.8 1.0 HA3 B:GLY160 3.5 92.5 1.0 HZ3 B:LYS499 3.5 86.0 1.0 OD2 B:ASP307 3.6 84.8 1.0 O B:THR159 3.6 93.6 1.0 C B:THR471 3.8 90.4 1.0 HD22 B:ASN521 3.8 86.3 1.0 CA B:GLY472 3.8 91.7 1.0 HG22 B:THR471 4.0 90.4 1.0 H B:LYS308 4.0 90.3 1.0 CA B:THR471 4.1 90.4 1.0 CE B:LYS499 4.2 86.0 1.0 HE2 B:LYS499 4.2 86.0 1.0 H B:THR309 4.2 90.1 1.0 HE3 B:LYS499 4.3 86.0 1.0 CG B:ASN521 4.3 86.3 1.0 MG B:MG802 4.4 77.4 1.0 CA B:GLY160 4.4 92.5 1.0 OD1 B:ASN521 4.5 86.3 1.0 HA2 B:GLY472 4.5 91.7 1.0 O B:THR471 4.5 90.4 1.0 HB B:THR309 4.5 90.1 1.0 HA2 B:GLY160 4.7 92.5 1.0 C B:THR159 4.7 93.6 1.0 HA B:ASP307 4.8 84.8 1.0 C B:GLY472 4.8 91.7 1.0 CB B:ASP307 4.9 84.8 1.0 CG2 B:THR471 4.9 90.4 1.0 N B:LYS308 4.9 90.3 1.0 N B:THR471 5.0 90.4 1.0 HB3 B:LYS308 5.0 90.3 1.0

M.E.Sweet, C.Larsen, B.P.Pedersen, D.L.Stokes. Cryo-Em Structure of Kdpfabc in E2-P State with BEF3 and K+ To Be Published.