Atomistry » Fluorine » PDB 7bj6-7ckn » 7br3
Atomistry »
  Fluorine »
    PDB 7bj6-7ckn »
      7br3 »

Fluorine in PDB 7br3: Crystal Structure of the Protein 1

Protein crystallography data

The structure of Crystal Structure of the Protein 1, PDB code: 7br3 was solved by L.Cheng, Z.Shao, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 31.15 / 2.79
Space group P 31 2 1
Cell size a, b, c (Å), α, β, γ (°) 73.964, 73.964, 231.156, 90.00, 90.00, 120.00
R / Rfree (%) 24.3 / 28.4

Fluorine Binding Sites:

The binding sites of Fluorine atom in the Crystal Structure of the Protein 1 (pdb code 7br3). This binding sites where shown within 5.0 Angstroms radius around Fluorine atom.
In total 5 binding sites of Fluorine where determined in the Crystal Structure of the Protein 1, PDB code: 7br3:
Jump to Fluorine binding site number: 1; 2; 3; 4; 5;

Fluorine binding site 1 out of 5 in 7br3

Go back to Fluorine Binding Sites List in 7br3
Fluorine binding site 1 out of 5 in the Crystal Structure of the Protein 1


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 1 of Crystal Structure of the Protein 1 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:F1211

b:40.3
occ:1.00
 FBG A:F5O1211 0.0 40.3 1.0
CBF A:F5O1211 1.3 40.4 1.0
FBI A:F5O1211 2.2 39.4 1.0
FBH A:F5O1211 2.2 41.8 1.0
CBE A:F5O1211 2.4 40.3 1.0
OAW A:F5O1211 3.0 39.3 1.0
CAZ A:F5O1211 3.1 39.3 1.0
CAY A:F5O1211 3.2 38.2 1.0
CBD A:F5O1211 3.4 41.5 1.0
O A:ASN305 3.7 41.4 1.0
CE1 A:TYR283 3.7 37.9 1.0
ND2 A:ASN305 3.7 41.5 1.0
CD1 A:TYR283 3.8 37.4 1.0
CAP A:F5O1211 3.9 38.8 1.0
NAQ A:F5O1211 4.0 38.1 1.0
CG A:ASN305 4.1 42.1 1.0
N A:PHE309 4.2 36.0 1.0
OD1 A:ASN305 4.2 42.0 1.0
CB A:PHE309 4.3 35.6 1.0
CA A:PHE309 4.4 35.3 1.0
CBA A:F5O1211 4.4 39.5 1.0
C A:ASN305 4.6 42.7 1.0
C A:PHE308 4.6 35.8 1.0
CBC A:F5O1211 4.6 41.5 1.0
CA A:ASN305 4.8 43.2 1.0
CZ A:TYR283 4.8 37.7 1.0
CD1 A:PHE309 4.8 34.6 1.0
CB A:PHE308 4.9 37.0 1.0
O A:PHE308 4.9 35.0 1.0
CG A:TYR283 5.0 36.6 1.0

Fluorine binding site 2 out of 5 in 7br3

Go back to Fluorine Binding Sites List in 7br3
Fluorine binding site 2 out of 5 in the Crystal Structure of the Protein 1


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 2 of Crystal Structure of the Protein 1 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:F1211

b:41.8
occ:1.00
 FBH A:F5O1211 0.0 41.8 1.0
CBF A:F5O1211 1.4 40.4 1.0
FBG A:F5O1211 2.2 40.3 1.0
FBI A:F5O1211 2.2 39.4 1.0
CBE A:F5O1211 2.4 40.3 1.0
CBD A:F5O1211 2.6 41.5 1.0
O A:ASN305 3.3 41.4 1.0
CA A:ASN305 3.5 43.2 1.0
CD1 A:LEU286 3.6 39.1 1.0
CG A:ASN305 3.6 42.1 1.0
OD1 A:ASN305 3.7 42.0 1.0
CAZ A:F5O1211 3.7 39.3 1.0
CB A:PHE308 3.8 37.0 1.0
C A:ASN305 3.9 42.7 1.0
ND2 A:ASN305 4.0 41.5 1.0
CBC A:F5O1211 4.0 41.5 1.0
CB A:ASN305 4.1 43.3 1.0
O A:VAL304 4.2 41.1 1.0
CAY A:F5O1211 4.4 38.2 1.0
N A:PHE309 4.5 36.0 1.0
N A:ASN305 4.5 44.8 1.0
C A:PHE308 4.6 35.8 1.0
CA A:PHE308 4.6 36.6 1.0
CD2 A:PHE308 4.7 39.0 1.0
CG A:PHE308 4.7 37.8 1.0
CBA A:F5O1211 4.8 39.5 1.0
C A:VAL304 4.8 42.1 1.0
OAW A:F5O1211 4.8 39.3 1.0
N A:PHE308 4.9 37.5 1.0
CBB A:F5O1211 4.9 40.4 1.0
CG A:LEU286 4.9 39.2 1.0

Fluorine binding site 3 out of 5 in 7br3

Go back to Fluorine Binding Sites List in 7br3
Fluorine binding site 3 out of 5 in the Crystal Structure of the Protein 1


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 3 of Crystal Structure of the Protein 1 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:F1211

b:39.4
occ:1.00
 FBI A:F5O1211 0.0 39.4 1.0
CBF A:F5O1211 1.4 40.4 1.0
FBG A:F5O1211 2.2 40.3 1.0
FBH A:F5O1211 2.2 41.8 1.0
CBE A:F5O1211 2.4 40.3 1.0
CAY A:F5O1211 3.0 38.2 1.0
CAZ A:F5O1211 3.1 39.3 1.0
CD1 A:LEU286 3.3 39.1 1.0
CD1 A:TYR283 3.3 37.4 1.0
CBD A:F5O1211 3.5 41.5 1.0
CA A:TYR283 3.7 37.0 1.0
CB A:PHE308 3.7 37.0 1.0
O A:TYR283 3.9 37.1 1.0
CE1 A:TYR283 4.0 37.9 1.0
CG A:TYR283 4.1 36.6 1.0
C A:PHE308 4.2 35.8 1.0
O A:PHE308 4.2 35.0 1.0
CB A:TYR283 4.3 36.3 1.0
C A:TYR283 4.3 36.7 1.0
NAQ A:F5O1211 4.4 38.1 1.0
CBA A:F5O1211 4.4 39.5 1.0
N A:PHE309 4.4 36.0 1.0
CG A:LEU286 4.4 39.2 1.0
OAW A:F5O1211 4.4 39.3 1.0
O A:PRO282 4.5 37.2 1.0
N A:TYR283 4.6 37.1 1.0
CB A:LEU286 4.6 38.8 1.0
CA A:PHE308 4.6 36.6 1.0
CBC A:F5O1211 4.7 41.5 1.0
O A:ASN305 4.7 41.4 1.0
CG A:PHE308 4.9 37.8 1.0
CAP A:F5O1211 4.9 38.8 1.0
C A:PRO282 4.9 36.7 1.0
CA A:PHE309 5.0 35.3 1.0

Fluorine binding site 4 out of 5 in 7br3

Go back to Fluorine Binding Sites List in 7br3
Fluorine binding site 4 out of 5 in the Crystal Structure of the Protein 1


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 4 of Crystal Structure of the Protein 1 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:F1211

b:38.8
occ:1.00
 FBJ A:F5O1211 0.0 38.8 1.0
CBA A:F5O1211 1.4 39.5 1.0
CAZ A:F5O1211 2.3 39.3 1.0
CBB A:F5O1211 2.4 40.4 1.0
CAY A:F5O1211 2.8 38.2 1.0
NAQ A:F5O1211 2.8 38.1 1.0
CAR A:F5O1211 3.1 37.7 1.0
CA A:GLY287 3.4 38.2 1.0
CAX A:F5O1211 3.4 37.1 1.0
CAN A:F5O1211 3.4 40.2 1.0
CAP A:F5O1211 3.5 38.8 1.0
CAM A:F5O1211 3.5 40.7 1.0
N A:GLY287 3.6 38.2 1.0
CBE A:F5O1211 3.6 40.3 1.0
CBC A:F5O1211 3.6 41.5 1.0
O A:LEU286 3.8 39.5 1.0
C A:LEU286 3.8 38.6 1.0
OAW A:F5O1211 3.9 39.3 1.0
FBS A:F5O1211 3.9 38.4 1.0
CAO A:F5O1211 3.9 40.2 1.0
CAS A:F5O1211 4.0 38.2 1.0
CBD A:F5O1211 4.1 41.5 1.0
CAL A:F5O1211 4.1 41.2 1.0
NAU A:F5O1211 4.3 39.2 1.0
CAJ A:F5O1211 4.5 40.5 1.0
CAT A:F5O1211 4.5 38.9 1.0
O A:TYR283 4.5 37.1 1.0
CAK A:F5O1211 4.6 41.0 1.0
C A:GLY287 4.6 39.2 1.0
CB A:TYR290 4.6 41.4 1.0
CB A:LEU286 4.7 38.8 1.0
O A:GLY287 4.9 40.0 1.0
CA A:LEU286 4.9 38.7 1.0
CBL A:F5O1211 4.9 38.5 1.0
CBF A:F5O1211 5.0 40.4 1.0
CBK A:F5O1211 5.0 38.3 1.0

Fluorine binding site 5 out of 5 in 7br3

Go back to Fluorine Binding Sites List in 7br3
Fluorine binding site 5 out of 5 in the Crystal Structure of the Protein 1


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 5 of Crystal Structure of the Protein 1 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:F1211

b:38.4
occ:1.00
 FBS A:F5O1211 0.0 38.4 1.0
CBL A:F5O1211 1.4 38.5 1.0
CBM A:F5O1211 2.4 38.8 1.0
CBK A:F5O1211 2.4 38.3 1.0
OBQ A:F5O1211 2.8 38.9 1.0
CAS A:F5O1211 2.8 38.2 1.0
CAR A:F5O1211 3.2 37.7 1.0
CAX A:F5O1211 3.3 37.1 1.0
CAT A:F5O1211 3.7 38.9 1.0
CBN A:F5O1211 3.7 39.2 1.0
CBP A:F5O1211 3.7 38.6 1.0
CG2 A:ILE21 3.7 45.8 1.0
FBJ A:F5O1211 3.9 38.8 1.0
CAO A:F5O1211 4.1 40.2 1.0
CZ A:PHE216 4.1 39.1 1.0
OAV A:F5O1211 4.1 39.7 1.0
CA A:GLY287 4.1 38.2 1.0
CBO A:F5O1211 4.2 39.1 1.0
CBR A:F5O1211 4.2 39.4 1.0
CAN A:F5O1211 4.3 40.2 1.0
NAQ A:F5O1211 4.3 38.1 1.0
CE1 A:PHE216 4.3 38.9 1.0
NAU A:F5O1211 4.6 39.2 1.0
CD1 A:LEU23 4.7 40.3 1.0
CAP A:F5O1211 4.8 38.8 1.0
O A:GLY287 4.8 40.0 1.0
C A:GLY287 4.8 39.2 1.0
CD1 A:ILE21 4.9 44.6 1.0

Reference:

W.Yan, L.Cheng, W.Wang, C.Wu, X.Yang, X.Du, L.Ma, S.Qi, Y.Wei, Z.Lu, S.Yang, Z.Shao. Structure of the Human Gonadotropin-Releasing Hormone Receptor GNRH1R Reveals An Unusual Ligand Binding Mode. Nat Commun V. 11 5287 2020.
ISSN: ESSN 2041-1723
PubMed: 33082324
DOI: 10.1038/S41467-020-19109-W
Page generated: Fri Aug 2 06:03:01 2024

Last articles

Zn in 9JYW
Zn in 9IR4
Zn in 9IR3
Zn in 9GMX
Zn in 9GMW
Zn in 9JEJ
Zn in 9ERF
Zn in 9ERE
Zn in 9EGV
Zn in 9EGW
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy