Atomistry » Fluorine » PDB 7bj6-7ckn » 7bvu
Atomistry »
  Fluorine »
    PDB 7bj6-7ckn »
      7bvu »

Fluorine in PDB 7bvu: Crystal Structure of S. Thermophilus Nfeob E66A.E67A Bound to Gdp.ALF4-

Protein crystallography data

The structure of Crystal Structure of S. Thermophilus Nfeob E66A.E67A Bound to Gdp.ALF4-, PDB code: 7bvu was solved by S.Batra, B.Prakash, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 29.83 / 2.50
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 48.619, 72.402, 157.957, 90, 90, 90
R / Rfree (%) 19.1 / 22.9

Other elements in 7bvu:

The structure of Crystal Structure of S. Thermophilus Nfeob E66A.E67A Bound to Gdp.ALF4- also contains other interesting chemical elements:

Aluminium (Al) 2 atoms
Potassium (K) 2 atoms
Chlorine (Cl) 2 atoms
Magnesium (Mg) 2 atoms

Fluorine Binding Sites:

The binding sites of Fluorine atom in the Crystal Structure of S. Thermophilus Nfeob E66A.E67A Bound to Gdp.ALF4- (pdb code 7bvu). This binding sites where shown within 5.0 Angstroms radius around Fluorine atom.
In total 8 binding sites of Fluorine where determined in the Crystal Structure of S. Thermophilus Nfeob E66A.E67A Bound to Gdp.ALF4-, PDB code: 7bvu:
Jump to Fluorine binding site number: 1; 2; 3; 4; 5; 6; 7; 8;

Fluorine binding site 1 out of 8 in 7bvu

Go back to Fluorine Binding Sites List in 7bvu
Fluorine binding site 1 out of 8 in the Crystal Structure of S. Thermophilus Nfeob E66A.E67A Bound to Gdp.ALF4-


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 1 of Crystal Structure of S. Thermophilus Nfeob E66A.E67A Bound to Gdp.ALF4- within 5.0Å range:
probe atom residue distance (Å) B Occ
A:F303

b:35.3
occ:1.00
 F1 A:ALF303 0.0 35.3 1.0
AL A:ALF303 1.8 28.8 1.0
N A:VAL34 2.5 33.9 1.0
F4 A:ALF303 2.5 31.9 1.0
F3 A:ALF303 2.5 32.3 1.0
K A:K305 2.8 38.2 1.0
O A:HOH420 2.9 29.6 1.0
O1B A:GDP302 3.0 25.9 1.0
N A:GLY33 3.1 34.6 1.0
N A:THR35 3.2 29.6 1.0
CA A:VAL34 3.2 31.4 1.0
CB A:VAL34 3.2 34.9 1.0
C A:GLY33 3.4 28.7 1.0
F2 A:ALF303 3.6 30.4 1.0
CA A:GLY33 3.6 30.6 1.0
C A:VAL34 3.7 32.6 1.0
O A:HOH438 3.7 25.2 1.0
CG2 A:VAL34 3.7 28.7 1.0
MG A:MG304 3.8 24.4 1.0
C A:PRO32 4.1 32.4 1.0
O A:TRP31 4.1 36.3 1.0
PB A:GDP302 4.3 27.8 1.0
CA A:THR35 4.4 28.4 1.0
CA A:PRO32 4.4 36.3 1.0
O3B A:GDP302 4.4 24.1 1.0
O A:GLY33 4.5 35.5 1.0
OG1 A:THR35 4.5 29.9 1.0
O A:THR35 4.5 30.2 1.0
O A:HOH470 4.5 28.9 1.0
CB A:THR35 4.5 26.8 1.0
O1A A:GDP302 4.5 22.9 1.0
CG1 A:VAL34 4.5 27.0 1.0
N A:ASN11 4.9 30.1 1.0
O A:VAL34 4.9 32.5 1.0
C A:THR35 4.9 30.3 1.0

Fluorine binding site 2 out of 8 in 7bvu

Go back to Fluorine Binding Sites List in 7bvu
Fluorine binding site 2 out of 8 in the Crystal Structure of S. Thermophilus Nfeob E66A.E67A Bound to Gdp.ALF4-


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 2 of Crystal Structure of S. Thermophilus Nfeob E66A.E67A Bound to Gdp.ALF4- within 5.0Å range:
probe atom residue distance (Å) B Occ
A:F303

b:30.4
occ:1.00
 F2 A:ALF303 0.0 30.4 1.0
AL A:ALF303 1.8 28.8 1.0
NZ A:LYS14 2.5 26.8 1.0
F4 A:ALF303 2.5 31.9 1.0
F3 A:ALF303 2.5 32.3 1.0
O1B A:GDP302 2.8 25.9 1.0
N A:GLY56 3.0 27.0 1.0
CA A:GLY56 3.2 26.1 1.0
O A:HOH420 3.2 29.6 1.0
O2B A:GDP302 3.3 29.7 1.0
CA A:PRO10 3.4 31.8 1.0
CE A:LYS14 3.4 31.0 1.0
N A:ASN11 3.5 30.1 1.0
PB A:GDP302 3.5 27.8 1.0
O A:HOH470 3.5 28.9 1.0
F1 A:ALF303 3.6 35.3 1.0
C A:PRO10 3.9 30.9 1.0
O3B A:GDP302 4.0 24.1 1.0
C A:PRO55 4.1 28.7 1.0
O A:ASN9 4.1 24.5 1.0
CB A:PRO10 4.2 27.9 1.0
O A:HOH416 4.2 28.1 1.0
MG A:MG304 4.2 24.4 1.0
N A:PRO10 4.2 30.3 1.0
C A:ASN9 4.5 26.7 1.0
CA A:PRO55 4.6 28.3 1.0
C A:GLY56 4.6 25.2 1.0
CA A:ASN11 4.7 32.8 1.0
O A:LEU54 4.7 29.3 1.0
CD A:LYS14 4.8 26.1 1.0
CG A:PRO10 4.8 27.2 1.0
O A:PRO55 4.9 28.4 1.0
O3A A:GDP302 5.0 30.8 1.0

Fluorine binding site 3 out of 8 in 7bvu

Go back to Fluorine Binding Sites List in 7bvu
Fluorine binding site 3 out of 8 in the Crystal Structure of S. Thermophilus Nfeob E66A.E67A Bound to Gdp.ALF4-


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 3 of Crystal Structure of S. Thermophilus Nfeob E66A.E67A Bound to Gdp.ALF4- within 5.0Å range:
probe atom residue distance (Å) B Occ
A:F303

b:32.3
occ:1.00
 F3 A:ALF303 0.0 32.3 1.0
AL A:ALF303 1.8 28.8 1.0
F1 A:ALF303 2.5 35.3 1.0
F2 A:ALF303 2.5 30.4 1.0
N A:GLY33 2.8 34.6 1.0
N A:ASN11 2.9 30.1 1.0
O1B A:GDP302 3.0 25.9 1.0
O A:HOH420 3.0 29.6 1.0
O A:HOH470 3.1 28.9 1.0
CA A:PRO32 3.3 36.3 1.0
CA A:PRO10 3.3 31.8 1.0
CB A:PRO10 3.3 27.9 1.0
C A:PRO32 3.5 32.4 1.0
C A:PRO10 3.5 30.9 1.0
F4 A:ALF303 3.6 31.9 1.0
K A:K305 3.7 38.2 1.0
CB A:PRO32 3.8 33.1 1.0
CA A:GLY33 3.8 30.6 1.0
CA A:ASN11 3.9 32.8 1.0
N A:VAL34 4.2 33.9 1.0
CB A:ASN11 4.4 33.1 1.0
PB A:GDP302 4.4 27.8 1.0
CG A:PRO10 4.5 27.2 1.0
O A:TRP31 4.5 36.3 1.0
C A:GLY33 4.5 28.7 1.0
N A:PRO32 4.5 40.1 1.0
O A:HOH480 4.6 31.8 1.0
N A:PRO10 4.7 30.3 1.0
O A:PRO10 4.7 32.5 1.0
OD1 A:ASN11 4.7 35.5 1.0
O2B A:GDP302 4.7 29.7 1.0
O A:PRO32 4.7 36.5 1.0
N A:GLY56 4.7 27.0 1.0
NZ A:LYS14 4.8 26.8 1.0
CA A:GLY56 4.8 26.1 1.0
CG A:ASN11 5.0 35.4 1.0
C A:TRP31 5.0 38.2 1.0

Fluorine binding site 4 out of 8 in 7bvu

Go back to Fluorine Binding Sites List in 7bvu
Fluorine binding site 4 out of 8 in the Crystal Structure of S. Thermophilus Nfeob E66A.E67A Bound to Gdp.ALF4-


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 4 of Crystal Structure of S. Thermophilus Nfeob E66A.E67A Bound to Gdp.ALF4- within 5.0Å range:
probe atom residue distance (Å) B Occ
A:F303

b:31.9
occ:1.00
 F4 A:ALF303 0.0 31.9 1.0
AL A:ALF303 1.8 28.8 1.0
MG A:MG304 2.0 24.4 1.0
F2 A:ALF303 2.5 30.4 1.0
F1 A:ALF303 2.5 35.3 1.0
O1B A:GDP302 2.8 25.9 1.0
O A:HOH416 2.9 28.1 1.0
O3B A:GDP302 3.0 24.1 1.0
O A:HOH420 3.1 29.6 1.0
CB A:THR35 3.1 26.8 1.0
OG1 A:THR35 3.1 29.9 1.0
PB A:GDP302 3.4 27.8 1.0
O A:HOH438 3.5 25.2 1.0
N A:THR35 3.5 29.6 1.0
F3 A:ALF303 3.6 32.3 1.0
CA A:THR35 3.8 28.4 1.0
O2B A:GDP302 4.0 29.7 1.0
OG1 A:THR15 4.0 28.4 1.0
O A:THR35 4.1 30.2 1.0
NZ A:LYS14 4.2 26.8 1.0
N A:GLY56 4.3 27.0 1.0
CG2 A:THR35 4.4 24.7 1.0
CE A:LYS14 4.4 31.0 1.0
O A:LEU54 4.4 29.3 1.0
K A:K305 4.4 38.2 1.0
C A:THR35 4.5 30.3 1.0
N A:VAL34 4.6 33.9 1.0
CA A:PRO55 4.6 28.3 1.0
C A:VAL34 4.6 32.6 1.0
O A:HOH470 4.8 28.9 1.0
O3A A:GDP302 4.8 30.8 1.0
CB A:VAL34 4.8 34.9 1.0
C A:PRO55 4.8 28.7 1.0
O1A A:GDP302 4.9 22.9 1.0
CA A:VAL34 4.9 31.4 1.0

Fluorine binding site 5 out of 8 in 7bvu

Go back to Fluorine Binding Sites List in 7bvu
Fluorine binding site 5 out of 8 in the Crystal Structure of S. Thermophilus Nfeob E66A.E67A Bound to Gdp.ALF4-


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 5 of Crystal Structure of S. Thermophilus Nfeob E66A.E67A Bound to Gdp.ALF4- within 5.0Å range:
probe atom residue distance (Å) B Occ
B:F303

b:28.8
occ:1.00
 F1 B:ALF303 0.0 28.8 1.0
AL B:ALF303 1.8 27.0 1.0
F3 B:ALF303 2.5 27.1 1.0
F4 B:ALF303 2.5 30.1 1.0
NZ B:LYS14 2.6 24.1 1.0
O3B B:GDP302 2.9 21.7 1.0
N B:GLY56 3.0 25.9 1.0
O B:HOH439 3.1 29.9 1.0
CA B:GLY56 3.1 25.2 1.0
CA B:PRO10 3.3 25.8 1.0
CE B:LYS14 3.5 22.4 1.0
O B:HOH473 3.5 28.2 1.0
O1B B:GDP302 3.5 28.6 1.0
F2 B:ALF303 3.6 30.2 1.0
N B:ASN11 3.6 25.6 1.0
PB B:GDP302 3.6 25.2 1.0
C B:PRO10 4.0 26.7 1.0
C B:PRO55 4.1 24.1 1.0
O2B B:GDP302 4.1 23.7 1.0
O B:ASN9 4.1 26.7 1.0
CB B:PRO10 4.1 24.5 1.0
N B:PRO10 4.2 27.7 1.0
O B:HOH426 4.2 24.4 1.0
MG B:MG304 4.2 25.2 1.0
C B:GLY56 4.5 25.6 1.0
C B:ASN9 4.5 25.6 1.0
CA B:PRO55 4.6 25.6 1.0
CG B:PRO10 4.7 25.8 1.0
CA B:ASN11 4.8 28.3 1.0
O B:LEU54 4.8 25.4 1.0
CD B:LYS14 4.9 22.7 1.0
O B:PRO55 4.9 22.1 1.0
N B:GLY33 5.0 30.2 1.0

Fluorine binding site 6 out of 8 in 7bvu

Go back to Fluorine Binding Sites List in 7bvu
Fluorine binding site 6 out of 8 in the Crystal Structure of S. Thermophilus Nfeob E66A.E67A Bound to Gdp.ALF4-


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 6 of Crystal Structure of S. Thermophilus Nfeob E66A.E67A Bound to Gdp.ALF4- within 5.0Å range:
probe atom residue distance (Å) B Occ
B:F303

b:30.2
occ:1.00
 F2 B:ALF303 0.0 30.2 1.0
AL B:ALF303 1.8 27.0 1.0
F3 B:ALF303 2.5 27.1 1.0
F4 B:ALF303 2.5 30.1 1.0
N B:VAL34 2.6 27.1 1.0
K B:K305 2.8 33.0 1.0
O3B B:GDP302 3.0 21.7 1.0
O B:HOH439 3.0 29.9 1.0
N B:THR35 3.1 26.4 1.0
CB B:VAL34 3.2 27.8 1.0
CA B:VAL34 3.3 25.3 1.0
O B:HOH424 3.4 24.2 1.0
N B:GLY33 3.4 30.2 1.0
F1 B:ALF303 3.6 28.8 1.0
C B:GLY33 3.6 28.6 1.0
C B:VAL34 3.7 29.0 1.0
MG B:MG304 3.7 25.2 1.0
CG2 B:VAL34 3.8 25.3 1.0
CA B:GLY33 3.9 26.8 1.0
PB B:GDP302 4.2 25.2 1.0
O B:TRP31 4.2 30.6 1.0
O2B B:GDP302 4.3 23.7 1.0
O2A B:GDP302 4.3 25.4 1.0
CA B:THR35 4.3 26.9 1.0
C B:PRO32 4.3 33.8 1.0
CB B:THR35 4.4 26.4 1.0
OG1 B:THR35 4.4 30.8 1.0
CG1 B:VAL34 4.5 25.4 1.0
O B:THR35 4.5 28.2 1.0
CA B:PRO32 4.6 33.8 1.0
O B:GLY33 4.6 33.7 1.0
O B:HOH473 4.9 28.2 1.0
O B:VAL34 4.9 28.5 1.0
C B:THR35 4.9 27.8 1.0
N B:ASN11 5.0 25.6 1.0

Fluorine binding site 7 out of 8 in 7bvu

Go back to Fluorine Binding Sites List in 7bvu
Fluorine binding site 7 out of 8 in the Crystal Structure of S. Thermophilus Nfeob E66A.E67A Bound to Gdp.ALF4-


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 7 of Crystal Structure of S. Thermophilus Nfeob E66A.E67A Bound to Gdp.ALF4- within 5.0Å range:
probe atom residue distance (Å) B Occ
B:F303

b:27.1
occ:1.00
 F3 B:ALF303 0.0 27.1 1.0
AL B:ALF303 1.8 27.0 1.0
MG B:MG304 2.0 25.2 1.0
F1 B:ALF303 2.5 28.8 1.0
F2 B:ALF303 2.5 30.2 1.0
O B:HOH426 2.8 24.4 1.0
O3B B:GDP302 2.9 21.7 1.0
O2B B:GDP302 2.9 23.7 1.0
CB B:THR35 3.1 26.4 1.0
O B:HOH439 3.2 29.9 1.0
OG1 B:THR35 3.3 30.8 1.0
PB B:GDP302 3.4 25.2 1.0
O B:HOH424 3.4 24.2 1.0
F4 B:ALF303 3.6 30.1 1.0
N B:THR35 3.6 26.4 1.0
CA B:THR35 3.9 26.9 1.0
OG1 B:THR15 4.0 22.1 1.0
O1B B:GDP302 4.0 28.6 1.0
NZ B:LYS14 4.1 24.1 1.0
O B:THR35 4.2 28.2 1.0
N B:GLY56 4.2 25.9 1.0
CE B:LYS14 4.2 22.4 1.0
O B:LEU54 4.3 25.4 1.0
CG2 B:THR35 4.3 24.0 1.0
C B:THR35 4.5 27.8 1.0
K B:K305 4.6 33.0 1.0
CA B:PRO55 4.6 25.6 1.0
N B:VAL34 4.7 27.1 1.0
C B:VAL34 4.8 29.0 1.0
C B:PRO55 4.8 24.1 1.0
O3A B:GDP302 4.8 30.8 1.0
O2A B:GDP302 4.9 25.4 1.0
O B:HOH473 5.0 28.2 1.0

Fluorine binding site 8 out of 8 in 7bvu

Go back to Fluorine Binding Sites List in 7bvu
Fluorine binding site 8 out of 8 in the Crystal Structure of S. Thermophilus Nfeob E66A.E67A Bound to Gdp.ALF4-


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 8 of Crystal Structure of S. Thermophilus Nfeob E66A.E67A Bound to Gdp.ALF4- within 5.0Å range:
probe atom residue distance (Å) B Occ
B:F303

b:30.1
occ:1.00
 F4 B:ALF303 0.0 30.1 1.0
AL B:ALF303 1.8 27.0 1.0
F1 B:ALF303 2.5 28.8 1.0
F2 B:ALF303 2.5 30.2 1.0
N B:GLY33 2.7 30.2 1.0
O B:HOH439 2.9 29.9 1.0
O3B B:GDP302 3.0 21.7 1.0
N B:ASN11 3.1 25.6 1.0
CA B:PRO32 3.3 33.8 1.0
O B:HOH473 3.3 28.2 1.0
CA B:PRO10 3.4 25.8 1.0
CB B:PRO10 3.5 24.5 1.0
C B:PRO32 3.5 33.8 1.0
K B:K305 3.5 33.0 1.0
F3 B:ALF303 3.6 27.1 1.0
C B:PRO10 3.7 26.7 1.0
CA B:GLY33 3.7 26.8 1.0
CB B:PRO32 3.9 33.2 1.0
CA B:ASN11 4.0 28.3 1.0
N B:VAL34 4.1 27.1 1.0
O B:TRP31 4.4 30.6 1.0
PB B:GDP302 4.4 25.2 1.0
C B:GLY33 4.4 28.6 1.0
N B:PRO32 4.6 32.9 1.0
CB B:ASN11 4.6 28.8 1.0
CG B:PRO10 4.6 25.8 1.0
OD1 B:ASN11 4.7 29.8 1.0
O B:PRO32 4.7 34.1 1.0
O B:HOH491 4.8 28.5 1.0
N B:PRO10 4.8 27.7 1.0
N B:GLY56 4.8 25.9 1.0
O1B B:GDP302 4.9 28.6 1.0
O B:PRO10 4.9 28.0 1.0
CA B:GLY56 4.9 25.2 1.0
NZ B:LYS14 4.9 24.1 1.0
C B:TRP31 4.9 32.1 1.0

Reference:

S.Batra, B.Prakash. Crystal Structure of S. Thermophilus Nfeob E66A.E67A Bound to Gdp.ALF4- To Be Published.
Page generated: Fri Aug 2 06:04:52 2024

Last articles

Zn in 9JYW
Zn in 9IR4
Zn in 9IR3
Zn in 9GMX
Zn in 9GMW
Zn in 9JEJ
Zn in 9ERF
Zn in 9ERE
Zn in 9EGV
Zn in 9EGW
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy