Atomistry » Fluorine » PDB 7bj6-7ckn » 7bwv
Atomistry »
  Fluorine »
    PDB 7bj6-7ckn »
      7bwv »

Fluorine in PDB 7bwv: Crystal Structure of S. Thermophilus Nfeob E67A Bound to Gdp.ALF4-

Protein crystallography data

The structure of Crystal Structure of S. Thermophilus Nfeob E67A Bound to Gdp.ALF4-, PDB code: 7bwv was solved by S.Batra, B.Prakash, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 35.63 / 2.35
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 48.699, 73.614, 156.754, 90, 90, 90
R / Rfree (%) 19.3 / 23.2

Other elements in 7bwv:

The structure of Crystal Structure of S. Thermophilus Nfeob E67A Bound to Gdp.ALF4- also contains other interesting chemical elements:

Chlorine (Cl) 2 atoms
Aluminium (Al) 2 atoms
Potassium (K) 2 atoms
Magnesium (Mg) 2 atoms

Fluorine Binding Sites:

The binding sites of Fluorine atom in the Crystal Structure of S. Thermophilus Nfeob E67A Bound to Gdp.ALF4- (pdb code 7bwv). This binding sites where shown within 5.0 Angstroms radius around Fluorine atom.
In total 8 binding sites of Fluorine where determined in the Crystal Structure of S. Thermophilus Nfeob E67A Bound to Gdp.ALF4-, PDB code: 7bwv:
Jump to Fluorine binding site number: 1; 2; 3; 4; 5; 6; 7; 8;

Fluorine binding site 1 out of 8 in 7bwv

Go back to Fluorine Binding Sites List in 7bwv
Fluorine binding site 1 out of 8 in the Crystal Structure of S. Thermophilus Nfeob E67A Bound to Gdp.ALF4-


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 1 of Crystal Structure of S. Thermophilus Nfeob E67A Bound to Gdp.ALF4- within 5.0Å range:
probe atom residue distance (Å) B Occ
A:F302

b:33.5
occ:1.00
F1 A:ALF302 0.0 33.5 1.0
AL A:ALF302 1.6 37.7 1.0
MG A:MG303 1.9 30.0 1.0
F4 A:ALF302 2.3 41.9 1.0
F3 A:ALF302 2.3 33.1 1.0
O3B A:GDP301 2.7 32.3 1.0
O2B A:GDP301 2.7 31.7 1.0
O A:HOH425 3.0 31.2 1.0
O A:HOH439 3.0 28.1 1.0
PB A:GDP301 3.1 31.3 1.0
OG1 A:THR35 3.1 30.4 1.0
CB A:THR35 3.2 29.2 1.0
O A:HOH433 3.2 28.5 1.0
F2 A:ALF302 3.3 39.6 1.0
N A:THR35 3.5 37.0 1.0
CA A:THR35 4.0 31.3 1.0
OG1 A:THR15 4.1 28.6 1.0
O1B A:GDP301 4.1 32.1 1.0
NZ A:LYS14 4.2 29.0 1.0
K A:K304 4.2 35.6 1.0
O A:THR35 4.4 28.0 1.0
O3A A:GDP301 4.4 42.1 1.0
N A:GLY56 4.4 29.4 1.0
N A:VAL34 4.5 33.6 1.0
CG2 A:THR35 4.5 20.9 1.0
CE A:LYS14 4.5 31.3 1.0
C A:VAL34 4.6 35.8 1.0
O A:LEU54 4.7 26.1 1.0
C A:THR35 4.7 31.9 1.0
CB A:VAL34 4.8 35.5 1.0
CA A:PRO55 4.8 27.1 1.0
CA A:VAL34 4.9 40.2 1.0
O2A A:GDP301 4.9 29.1 1.0
O A:HOH465 5.0 30.5 1.0

Fluorine binding site 2 out of 8 in 7bwv

Go back to Fluorine Binding Sites List in 7bwv
Fluorine binding site 2 out of 8 in the Crystal Structure of S. Thermophilus Nfeob E67A Bound to Gdp.ALF4-


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 2 of Crystal Structure of S. Thermophilus Nfeob E67A Bound to Gdp.ALF4- within 5.0Å range:
probe atom residue distance (Å) B Occ
A:F302

b:39.6
occ:1.00
F2 A:ALF302 0.0 39.6 1.0
AL A:ALF302 1.6 37.7 1.0
F4 A:ALF302 2.3 41.9 1.0
F3 A:ALF302 2.3 33.1 1.0
O A:HOH439 2.7 28.1 1.0
N A:GLY33 2.8 30.1 1.0
O3B A:GDP301 2.9 32.3 1.0
N A:ASN11 3.1 38.1 1.0
F1 A:ALF302 3.3 33.5 1.0
CB A:PRO10 3.3 28.3 1.0
CA A:PRO10 3.3 34.5 1.0
O A:HOH465 3.4 30.5 1.0
CA A:PRO32 3.4 38.1 1.0
C A:PRO32 3.6 31.4 1.0
C A:PRO10 3.6 32.5 1.0
K A:K304 3.7 35.6 1.0
CA A:GLY33 3.8 31.3 1.0
CA A:ASN11 4.0 41.1 1.0
CB A:PRO32 4.1 35.1 1.0
N A:VAL34 4.1 33.6 1.0
PB A:GDP301 4.3 31.3 1.0
O A:TRP31 4.3 38.7 1.0
CG A:PRO10 4.5 33.7 1.0
C A:GLY33 4.5 33.9 1.0
CB A:ASN11 4.6 40.3 1.0
N A:PRO32 4.6 43.5 1.0
O A:HOH469 4.6 35.7 1.0
N A:GLY56 4.7 29.4 1.0
N A:PRO10 4.7 35.9 1.0
NZ A:LYS14 4.8 29.0 1.0
O A:PRO10 4.8 32.7 1.0
O A:PRO32 4.8 38.4 1.0
OD1 A:ASN11 4.8 44.5 1.0
CA A:GLY56 4.8 33.1 1.0
C A:TRP31 4.9 42.8 1.0
O1B A:GDP301 5.0 32.1 1.0

Fluorine binding site 3 out of 8 in 7bwv

Go back to Fluorine Binding Sites List in 7bwv
Fluorine binding site 3 out of 8 in the Crystal Structure of S. Thermophilus Nfeob E67A Bound to Gdp.ALF4-


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 3 of Crystal Structure of S. Thermophilus Nfeob E67A Bound to Gdp.ALF4- within 5.0Å range:
probe atom residue distance (Å) B Occ
A:F302

b:33.1
occ:1.00
F3 A:ALF302 0.0 33.1 1.0
AL A:ALF302 1.6 37.7 1.0
F1 A:ALF302 2.3 33.5 1.0
F2 A:ALF302 2.3 39.6 1.0
NZ A:LYS14 2.7 29.0 1.0
O3B A:GDP301 2.8 32.3 1.0
O A:HOH439 2.9 28.1 1.0
N A:GLY56 3.1 29.4 1.0
F4 A:ALF302 3.3 41.9 1.0
CA A:GLY56 3.3 33.1 1.0
CA A:PRO10 3.4 34.5 1.0
PB A:GDP301 3.4 31.3 1.0
N A:ASN11 3.6 38.1 1.0
CE A:LYS14 3.6 31.3 1.0
O A:HOH465 3.6 30.5 1.0
O1B A:GDP301 3.7 32.1 1.0
O2B A:GDP301 3.9 31.7 1.0
O A:HOH425 4.0 31.2 1.0
MG A:MG303 4.0 30.0 1.0
C A:PRO10 4.0 32.5 1.0
CB A:PRO10 4.1 28.3 1.0
C A:PRO55 4.1 25.3 1.0
O A:ASN9 4.3 28.8 1.0
N A:PRO10 4.4 35.9 1.0
CA A:PRO55 4.6 27.1 1.0
C A:ASN9 4.7 33.1 1.0
O A:LEU54 4.7 26.1 1.0
C A:GLY56 4.8 28.0 1.0
CA A:ASN11 4.8 41.1 1.0
CG A:PRO10 4.8 33.7 1.0
N A:GLY33 4.9 30.1 1.0
O3A A:GDP301 4.9 42.1 1.0
K A:K304 4.9 35.6 1.0

Fluorine binding site 4 out of 8 in 7bwv

Go back to Fluorine Binding Sites List in 7bwv
Fluorine binding site 4 out of 8 in the Crystal Structure of S. Thermophilus Nfeob E67A Bound to Gdp.ALF4-


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 4 of Crystal Structure of S. Thermophilus Nfeob E67A Bound to Gdp.ALF4- within 5.0Å range:
probe atom residue distance (Å) B Occ
A:F302

b:41.9
occ:1.00
F4 A:ALF302 0.0 41.9 1.0
AL A:ALF302 1.6 37.7 1.0
F1 A:ALF302 2.3 33.5 1.0
F2 A:ALF302 2.3 39.6 1.0
N A:VAL34 2.7 33.6 1.0
K A:K304 2.7 35.6 1.0
O A:HOH439 2.9 28.1 1.0
O3B A:GDP301 2.9 32.3 1.0
F3 A:ALF302 3.3 33.1 1.0
CB A:VAL34 3.3 35.5 1.0
N A:GLY33 3.3 30.1 1.0
N A:THR35 3.3 37.0 1.0
CA A:VAL34 3.4 40.2 1.0
O A:HOH433 3.6 28.5 1.0
C A:GLY33 3.6 33.9 1.0
MG A:MG303 3.7 30.0 1.0
CG2 A:VAL34 3.8 24.5 1.0
CA A:GLY33 3.9 31.3 1.0
C A:VAL34 3.9 35.8 1.0
O A:TRP31 4.0 38.7 1.0
PB A:GDP301 4.0 31.3 1.0
O2B A:GDP301 4.2 31.7 1.0
C A:PRO32 4.2 31.4 1.0
OG1 A:THR35 4.4 30.4 1.0
CA A:PRO32 4.5 38.1 1.0
CA A:THR35 4.5 31.3 1.0
CB A:THR35 4.5 29.2 1.0
CG1 A:VAL34 4.6 28.8 1.0
O2A A:GDP301 4.6 29.1 1.0
N A:ASN11 4.7 38.1 1.0
O3A A:GDP301 4.7 42.1 1.0
O A:GLY33 4.8 32.5 1.0
O A:THR35 4.8 28.0 1.0
O A:HOH465 4.8 30.5 1.0

Fluorine binding site 5 out of 8 in 7bwv

Go back to Fluorine Binding Sites List in 7bwv
Fluorine binding site 5 out of 8 in the Crystal Structure of S. Thermophilus Nfeob E67A Bound to Gdp.ALF4-


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 5 of Crystal Structure of S. Thermophilus Nfeob E67A Bound to Gdp.ALF4- within 5.0Å range:
probe atom residue distance (Å) B Occ
B:F302

b:32.3
occ:1.00
F1 B:ALF302 0.0 32.3 1.0
AL B:ALF302 1.6 31.9 1.0
F4 B:ALF302 2.3 33.1 1.0
F3 B:ALF302 2.3 33.9 1.0
O B:HOH456 2.7 26.8 1.0
O1B B:GDP301 2.7 28.9 1.0
N B:GLY33 2.9 28.7 1.0
N B:ASN11 3.1 26.1 1.0
F2 B:ALF302 3.3 31.6 1.0
O B:HOH479 3.4 29.8 1.0
CA B:PRO10 3.4 30.4 1.0
CB B:PRO10 3.4 25.8 1.0
CA B:PRO32 3.4 28.2 1.0
K B:K304 3.6 32.7 1.0
C B:PRO32 3.7 34.7 1.0
C B:PRO10 3.7 31.7 1.0
CA B:GLY33 3.9 28.1 1.0
CA B:ASN11 4.0 27.4 1.0
N B:VAL34 4.1 29.8 1.0
PB B:GDP301 4.1 27.6 1.0
CB B:PRO32 4.1 29.8 1.0
O B:TRP31 4.3 30.3 1.0
C B:GLY33 4.5 33.6 1.0
CB B:ASN11 4.6 28.7 1.0
CG B:PRO10 4.6 33.2 1.0
N B:PRO32 4.6 32.8 1.0
N B:GLY56 4.7 31.6 1.0
OD1 B:ASN11 4.8 35.3 1.0
O3B B:GDP301 4.8 28.0 1.0
NZ B:LYS14 4.8 28.4 1.0
N B:PRO10 4.8 35.2 1.0
O B:PRO10 4.9 28.1 1.0
O B:PRO32 4.9 35.6 1.0
CA B:GLY56 4.9 31.7 1.0
O2B B:GDP301 4.9 36.0 1.0
C B:TRP31 4.9 33.7 1.0
CG B:ASN11 5.0 31.5 1.0

Fluorine binding site 6 out of 8 in 7bwv

Go back to Fluorine Binding Sites List in 7bwv
Fluorine binding site 6 out of 8 in the Crystal Structure of S. Thermophilus Nfeob E67A Bound to Gdp.ALF4-


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 6 of Crystal Structure of S. Thermophilus Nfeob E67A Bound to Gdp.ALF4- within 5.0Å range:
probe atom residue distance (Å) B Occ
B:F302

b:31.6
occ:1.00
F2 B:ALF302 0.0 31.6 1.0
AL B:ALF302 1.6 31.9 1.0
MG B:MG303 2.0 27.8 1.0
F3 B:ALF302 2.3 33.9 1.0
F4 B:ALF302 2.3 33.1 1.0
O3B B:GDP301 2.6 28.0 1.0
O1B B:GDP301 2.8 28.9 1.0
O B:HOH456 2.9 26.8 1.0
O B:HOH426 3.0 26.4 1.0
OG1 B:THR35 3.0 28.5 1.0
PB B:GDP301 3.1 27.6 1.0
CB B:THR35 3.1 25.9 1.0
O B:HOH404 3.2 24.0 1.0
F1 B:ALF302 3.3 32.3 1.0
N B:THR35 3.5 31.9 1.0
CA B:THR35 3.9 32.3 1.0
OG1 B:THR15 4.1 23.0 1.0
NZ B:LYS14 4.2 28.4 1.0
O2B B:GDP301 4.2 36.0 1.0
CE B:LYS14 4.3 27.8 1.0
O B:THR35 4.3 33.1 1.0
N B:GLY56 4.3 31.6 1.0
CG2 B:THR35 4.4 22.3 1.0
K B:K304 4.4 32.7 1.0
O B:LEU54 4.5 26.3 1.0
O3A B:GDP301 4.6 31.1 1.0
N B:VAL34 4.6 29.8 1.0
C B:THR35 4.6 30.3 1.0
C B:VAL34 4.7 33.2 1.0
O1A B:GDP301 4.7 28.3 1.0
CA B:PRO55 4.7 31.1 1.0
CB B:VAL34 4.9 30.5 1.0
C B:PRO55 4.9 29.4 1.0
O B:HOH479 4.9 29.8 1.0
CA B:VAL34 5.0 32.3 1.0

Fluorine binding site 7 out of 8 in 7bwv

Go back to Fluorine Binding Sites List in 7bwv
Fluorine binding site 7 out of 8 in the Crystal Structure of S. Thermophilus Nfeob E67A Bound to Gdp.ALF4-


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 7 of Crystal Structure of S. Thermophilus Nfeob E67A Bound to Gdp.ALF4- within 5.0Å range:
probe atom residue distance (Å) B Occ
B:F302

b:33.9
occ:1.00
F3 B:ALF302 0.0 33.9 1.0
AL B:ALF302 1.6 31.9 1.0
F1 B:ALF302 2.3 32.3 1.0
F2 B:ALF302 2.3 31.6 1.0
K B:K304 2.7 32.7 1.0
O1B B:GDP301 2.8 28.9 1.0
N B:VAL34 2.8 29.8 1.0
O B:HOH456 2.8 26.8 1.0
F4 B:ALF302 3.3 33.1 1.0
N B:THR35 3.3 31.9 1.0
CB B:VAL34 3.3 30.5 1.0
O B:HOH404 3.4 24.0 1.0
CA B:VAL34 3.5 32.3 1.0
N B:GLY33 3.5 28.7 1.0
MG B:MG303 3.6 27.8 1.0
C B:GLY33 3.8 33.6 1.0
PB B:GDP301 3.9 27.6 1.0
C B:VAL34 3.9 33.2 1.0
CG2 B:VAL34 3.9 24.3 1.0
O3B B:GDP301 3.9 28.0 1.0
CA B:GLY33 4.0 28.1 1.0
O B:TRP31 4.1 30.3 1.0
O1A B:GDP301 4.3 28.3 1.0
OG1 B:THR35 4.3 28.5 1.0
C B:PRO32 4.4 34.7 1.0
CA B:THR35 4.4 32.3 1.0
CB B:THR35 4.4 25.9 1.0
CA B:PRO32 4.6 28.2 1.0
CG1 B:VAL34 4.6 25.7 1.0
N B:ASN11 4.7 26.1 1.0
O3A B:GDP301 4.8 31.1 1.0
O B:THR35 4.8 33.1 1.0
O B:HOH479 4.8 29.8 1.0
O B:GLY33 4.9 28.1 1.0

Fluorine binding site 8 out of 8 in 7bwv

Go back to Fluorine Binding Sites List in 7bwv
Fluorine binding site 8 out of 8 in the Crystal Structure of S. Thermophilus Nfeob E67A Bound to Gdp.ALF4-


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 8 of Crystal Structure of S. Thermophilus Nfeob E67A Bound to Gdp.ALF4- within 5.0Å range:
probe atom residue distance (Å) B Occ
B:F302

b:33.1
occ:1.00
F4 B:ALF302 0.0 33.1 1.0
AL B:ALF302 1.6 31.9 1.0
F1 B:ALF302 2.3 32.3 1.0
F2 B:ALF302 2.3 31.6 1.0
O B:HOH456 2.7 26.8 1.0
O1B B:GDP301 2.8 28.9 1.0
NZ B:LYS14 2.9 28.4 1.0
N B:GLY56 3.0 31.6 1.0
CA B:GLY56 3.3 31.7 1.0
F3 B:ALF302 3.3 33.9 1.0
CA B:PRO10 3.4 30.4 1.0
O B:HOH479 3.5 29.8 1.0
PB B:GDP301 3.5 27.6 1.0
CE B:LYS14 3.5 27.8 1.0
N B:ASN11 3.6 26.1 1.0
O3B B:GDP301 3.8 28.0 1.0
O2B B:GDP301 3.9 36.0 1.0
CB B:PRO10 4.0 25.8 1.0
C B:PRO10 4.1 31.7 1.0
C B:PRO55 4.1 29.4 1.0
MG B:MG303 4.1 27.8 1.0
O B:HOH426 4.3 26.4 1.0
O B:ASN9 4.3 29.0 1.0
N B:PRO10 4.4 35.2 1.0
CA B:PRO55 4.6 31.1 1.0
CG B:PRO10 4.7 33.2 1.0
C B:GLY56 4.7 31.2 1.0
C B:ASN9 4.7 33.4 1.0
O B:LEU54 4.7 26.3 1.0
CA B:ASN11 4.8 27.4 1.0
N B:GLY33 4.9 28.7 1.0
O B:PRO55 5.0 27.6 1.0
CB B:THR35 5.0 25.9 1.0

Reference:

S.Batra, B.Prakash. Crystal Structure of S. Thermophilus Nfeob E67A Bound to Gdp.ALF4- To Be Published.
Page generated: Fri Aug 2 06:05:24 2024

Last articles

Cl in 3E15
Cl in 3E1T
Cl in 3E18
Cl in 3E0R
Cl in 3DZU
Cl in 3DZZ
Cl in 3DZT
Cl in 3E00
Cl in 3DZC
Cl in 3DXB
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy