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Fluorine in PDB 7ctt: Cryo-Em Structure of Favipiravir Bound to Replicating Polymerase Complex of Sars-Cov-2 in the Pre-Catalytic State.

Enzymatic activity of Cryo-Em Structure of Favipiravir Bound to Replicating Polymerase Complex of Sars-Cov-2 in the Pre-Catalytic State.

All present enzymatic activity of Cryo-Em Structure of Favipiravir Bound to Replicating Polymerase Complex of Sars-Cov-2 in the Pre-Catalytic State.:
2.7.7.48;

Other elements in 7ctt:

The structure of Cryo-Em Structure of Favipiravir Bound to Replicating Polymerase Complex of Sars-Cov-2 in the Pre-Catalytic State. also contains other interesting chemical elements:

Magnesium (Mg) 1 atom
Zinc (Zn) 2 atoms

Fluorine Binding Sites:

The binding sites of Fluorine atom in the Cryo-Em Structure of Favipiravir Bound to Replicating Polymerase Complex of Sars-Cov-2 in the Pre-Catalytic State. (pdb code 7ctt). This binding sites where shown within 5.0 Angstroms radius around Fluorine atom.
In total only one binding site of Fluorine was determined in the Cryo-Em Structure of Favipiravir Bound to Replicating Polymerase Complex of Sars-Cov-2 in the Pre-Catalytic State., PDB code: 7ctt:

Fluorine binding site 1 out of 1 in 7ctt

Go back to Fluorine Binding Sites List in 7ctt
Fluorine binding site 1 out of 1 in the Cryo-Em Structure of Favipiravir Bound to Replicating Polymerase Complex of Sars-Cov-2 in the Pre-Catalytic State.


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 1 of Cryo-Em Structure of Favipiravir Bound to Replicating Polymerase Complex of Sars-Cov-2 in the Pre-Catalytic State. within 5.0Å range:
probe atom residue distance (Å) B Occ
A:F1004

b:63.1
occ:1.00
F01 A:GE61004 0.0 63.1 1.0
C07 A:GE61004 1.4 63.1 1.0
N03 A:GE61004 2.3 63.1 1.0
C06 A:GE61004 2.4 63.1 1.0
C08 A:GE61004 3.6 63.1 1.0
N02 A:GE61004 3.6 63.1 1.0
NE A:ARG555 4.1 68.5 1.0
C10 A:GE61004 4.1 63.1 1.0
N7 Q:A20 4.2 55.8 1.0
CD A:ARG555 4.2 68.5 1.0
NZ A:LYS545 4.2 68.7 1.0
CZ A:ARG555 4.2 68.5 1.0
NH1 A:ARG555 4.4 68.5 1.0
C8 Q:A20 4.5 55.8 1.0
C5 Q:A20 4.5 55.8 1.0
C05 A:GE61004 4.6 63.1 1.0
CG A:ARG555 4.6 68.5 1.0
O14 A:GE61004 4.7 63.1 1.0
NH2 A:ARG555 4.7 68.5 1.0
C03 A:GE61004 4.8 63.1 1.0
O01 A:GE61004 4.8 63.1 1.0
C09 A:GE61004 4.8 63.1 1.0
C6 Q:A20 4.9 55.8 1.0
O04 A:GE61004 5.0 63.1 1.0
O09 A:GE61004 5.0 63.1 1.0

Reference:

Q.Peng, R.Peng, S.Yi. Cryo-Em Structure of Favipiravir Bound to Replicating Polymerase Complex of Sars-Cov-2 in the Pre-Catalytic State. To Be Published.
Page generated: Fri Aug 2 06:16:00 2024

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