Fluorine in PDB 7cxc: Structure of Mouse Galectin-3 Crd Point Mutant (V160A) in Complex with Td-139 Belonging to P121 Space Group.
Protein crystallography data
The structure of Structure of Mouse Galectin-3 Crd Point Mutant (V160A) in Complex with Td-139 Belonging to P121 Space Group., PDB code: 7cxc
was solved by
A.Kumar,
with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:
Resolution Low / High (Å)
|
43.74 /
1.40
|
Space group
|
P 1 21 1
|
Cell size a, b, c (Å), α, β, γ (°)
|
35.513,
58.286,
68.085,
90,
103.56,
90
|
R / Rfree (%)
|
14.4 /
17.8
|
Fluorine Binding Sites:
The binding sites of Fluorine atom in the Structure of Mouse Galectin-3 Crd Point Mutant (V160A) in Complex with Td-139 Belonging to P121 Space Group.
(pdb code 7cxc). This binding sites where shown within
5.0 Angstroms radius around Fluorine atom.
In total 8 binding sites of Fluorine where determined in the
Structure of Mouse Galectin-3 Crd Point Mutant (V160A) in Complex with Td-139 Belonging to P121 Space Group., PDB code: 7cxc:
Jump to Fluorine binding site number:
1;
2;
3;
4;
5;
6;
7;
8;
Fluorine binding site 1 out
of 8 in 7cxc
Go back to
Fluorine Binding Sites List in 7cxc
Fluorine binding site 1 out
of 8 in the Structure of Mouse Galectin-3 Crd Point Mutant (V160A) in Complex with Td-139 Belonging to P121 Space Group.
Mono view
Stereo pair view
|
A full contact list of Fluorine with other atoms in the F binding
site number 1 of Structure of Mouse Galectin-3 Crd Point Mutant (V160A) in Complex with Td-139 Belonging to P121 Space Group. within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:F301
b:16.4
occ:0.50
|
F18
|
A:TD2301
|
0.0
|
16.4
|
0.5
|
H25
|
A:TD2301
|
0.4
|
13.0
|
0.5
|
C14
|
A:TD2301
|
1.4
|
14.1
|
0.5
|
C16
|
A:TD2301
|
1.4
|
13.7
|
0.5
|
C15
|
A:TD2301
|
2.3
|
12.7
|
0.5
|
C17
|
A:TD2301
|
2.3
|
10.8
|
0.5
|
C13
|
A:TD2301
|
2.4
|
10.1
|
0.5
|
C15
|
A:TD2301
|
2.4
|
13.0
|
0.5
|
HD22
|
A:ASN180
|
2.5
|
12.1
|
1.0
|
H26
|
A:TD2301
|
2.5
|
11.5
|
0.5
|
H24
|
A:TD2301
|
2.6
|
13.0
|
0.5
|
O
|
A:HOH490
|
2.6
|
26.5
|
1.0
|
H8
|
A:TD2301
|
2.6
|
10.5
|
0.5
|
H24
|
A:TD2301
|
2.7
|
13.3
|
0.5
|
O
|
A:HOH425
|
2.9
|
16.3
|
1.0
|
HD21
|
A:ASN180
|
3.0
|
11.9
|
1.0
|
ND2
|
A:ASN180
|
3.0
|
12.3
|
1.0
|
HG2
|
A:GLU179
|
3.0
|
10.3
|
1.0
|
OE1
|
A:GLU179
|
3.1
|
10.6
|
1.0
|
CD
|
A:GLU179
|
3.3
|
11.1
|
1.0
|
C16
|
A:TD2301
|
3.6
|
12.5
|
0.5
|
C12
|
A:TD2301
|
3.6
|
11.3
|
0.5
|
C12
|
A:TD2301
|
3.6
|
11.8
|
0.5
|
C14
|
A:TD2301
|
3.7
|
13.9
|
0.5
|
CG
|
A:GLU179
|
3.7
|
10.0
|
1.0
|
HH12
|
A:ARG200
|
3.8
|
9.8
|
1.0
|
HB2
|
A:ASN180
|
4.0
|
12.4
|
1.0
|
OE2
|
A:GLU179
|
4.0
|
9.7
|
1.0
|
CG
|
A:ASN180
|
4.1
|
10.7
|
1.0
|
C17
|
A:TD2301
|
4.1
|
11.4
|
0.5
|
C13
|
A:TD2301
|
4.2
|
12.2
|
0.5
|
HG3
|
A:GLU179
|
4.3
|
10.1
|
1.0
|
NH1
|
A:ARG200
|
4.3
|
10.4
|
1.0
|
H25
|
A:TD2301
|
4.4
|
12.4
|
0.5
|
HB3
|
A:GLU179
|
4.5
|
11.2
|
1.0
|
O
|
A:GLU179
|
4.5
|
11.0
|
1.0
|
CB
|
A:ASN180
|
4.6
|
12.5
|
1.0
|
HH22
|
A:ARG200
|
4.6
|
8.2
|
1.0
|
O
|
A:HOH515
|
4.6
|
18.7
|
1.0
|
CB
|
A:GLU179
|
4.7
|
11.4
|
1.0
|
HH11
|
A:ARG200
|
4.7
|
9.8
|
1.0
|
C9
|
A:TD2301
|
4.7
|
9.3
|
0.5
|
C9
|
A:TD2301
|
4.8
|
9.0
|
0.5
|
F18
|
A:TD2301
|
4.8
|
17.4
|
0.5
|
C
|
A:GLU179
|
4.8
|
11.1
|
1.0
|
H22
|
A:TD2301
|
4.8
|
9.2
|
0.5
|
H22
|
A:TD2301
|
4.9
|
8.7
|
0.5
|
CZ
|
A:ARG200
|
5.0
|
8.3
|
1.0
|
OD1
|
A:ASN180
|
5.0
|
14.9
|
1.0
|
|
Fluorine binding site 2 out
of 8 in 7cxc
Go back to
Fluorine Binding Sites List in 7cxc
Fluorine binding site 2 out
of 8 in the Structure of Mouse Galectin-3 Crd Point Mutant (V160A) in Complex with Td-139 Belonging to P121 Space Group.
Mono view
Stereo pair view
|
A full contact list of Fluorine with other atoms in the F binding
site number 2 of Structure of Mouse Galectin-3 Crd Point Mutant (V160A) in Complex with Td-139 Belonging to P121 Space Group. within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:F301
b:17.4
occ:0.50
|
F18
|
A:TD2301
|
0.0
|
17.4
|
0.5
|
H25
|
A:TD2301
|
0.4
|
12.4
|
0.5
|
C14
|
A:TD2301
|
1.4
|
13.9
|
0.5
|
C16
|
A:TD2301
|
1.4
|
12.5
|
0.5
|
C17
|
A:TD2301
|
2.3
|
11.4
|
0.5
|
C13
|
A:TD2301
|
2.3
|
12.2
|
0.5
|
C15
|
A:TD2301
|
2.4
|
13.0
|
0.5
|
C15
|
A:TD2301
|
2.4
|
12.7
|
0.5
|
H26
|
A:TD2301
|
2.5
|
11.5
|
0.5
|
H8
|
A:TD2301
|
2.6
|
12.2
|
0.5
|
H24
|
A:TD2301
|
2.6
|
13.3
|
0.5
|
H24
|
A:TD2301
|
2.7
|
13.0
|
0.5
|
HD3
|
A:ARG200
|
3.2
|
10.8
|
1.0
|
O
|
A:HOH494
|
3.3
|
12.2
|
1.0
|
C16
|
A:TD2301
|
3.5
|
13.7
|
0.5
|
C12
|
A:TD2301
|
3.6
|
11.8
|
0.5
|
C12
|
A:TD2301
|
3.6
|
11.3
|
0.5
|
C14
|
A:TD2301
|
3.6
|
14.1
|
0.5
|
HH11
|
A:ARG200
|
3.8
|
9.8
|
1.0
|
CD
|
A:ARG200
|
4.0
|
11.0
|
1.0
|
HD2
|
A:ARG200
|
4.0
|
10.8
|
1.0
|
C17
|
A:TD2301
|
4.1
|
10.8
|
0.5
|
NH1
|
A:ARG200
|
4.2
|
10.4
|
1.0
|
C13
|
A:TD2301
|
4.2
|
10.1
|
0.5
|
NE
|
A:ARG200
|
4.3
|
10.1
|
1.0
|
H25
|
A:TD2301
|
4.4
|
13.0
|
0.5
|
CZ
|
A:ARG200
|
4.5
|
8.3
|
1.0
|
HH12
|
A:ARG200
|
4.6
|
9.8
|
1.0
|
F18
|
A:TD2301
|
4.8
|
16.4
|
0.5
|
C9
|
A:TD2301
|
4.8
|
9.0
|
0.5
|
C9
|
A:TD2301
|
4.8
|
9.3
|
0.5
|
HE
|
A:ARG200
|
4.9
|
9.4
|
1.0
|
|
Fluorine binding site 3 out
of 8 in 7cxc
Go back to
Fluorine Binding Sites List in 7cxc
Fluorine binding site 3 out
of 8 in the Structure of Mouse Galectin-3 Crd Point Mutant (V160A) in Complex with Td-139 Belonging to P121 Space Group.
Mono view
Stereo pair view
|
A full contact list of Fluorine with other atoms in the F binding
site number 3 of Structure of Mouse Galectin-3 Crd Point Mutant (V160A) in Complex with Td-139 Belonging to P121 Space Group. within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:F301
b:11.2
occ:0.50
|
F28
|
A:TD2301
|
0.0
|
11.2
|
0.5
|
F28
|
A:TD2301
|
0.0
|
12.2
|
0.5
|
C26
|
A:TD2301
|
1.3
|
10.5
|
0.5
|
C26
|
A:TD2301
|
1.4
|
10.6
|
0.5
|
C27
|
A:TD2301
|
2.3
|
9.0
|
0.5
|
C25
|
A:TD2301
|
2.4
|
12.4
|
0.5
|
C25
|
A:TD2301
|
2.4
|
12.5
|
0.5
|
C27
|
A:TD2301
|
2.4
|
8.7
|
0.5
|
H30
|
A:TD2301
|
2.6
|
9.5
|
0.5
|
HG3
|
A:ARG158
|
2.6
|
11.6
|
1.0
|
H30
|
A:TD2301
|
2.6
|
9.2
|
0.5
|
H29
|
A:TD2301
|
2.6
|
12.3
|
0.5
|
H29
|
A:TD2301
|
2.6
|
12.4
|
0.5
|
HB2
|
A:ARG158
|
2.8
|
9.7
|
1.0
|
HB2
|
A:ALA160
|
2.8
|
8.5
|
1.0
|
HD3
|
A:ARG158
|
2.9
|
13.5
|
1.0
|
HD22
|
A:ASN174
|
3.1
|
7.3
|
1.0
|
CG
|
A:ARG158
|
3.2
|
11.4
|
1.0
|
C
|
A:ILE159
|
3.2
|
7.2
|
1.0
|
HB3
|
A:ALA160
|
3.4
|
8.6
|
1.0
|
N
|
A:ALA160
|
3.4
|
8.0
|
1.0
|
CB
|
A:ARG158
|
3.4
|
9.9
|
1.0
|
O
|
A:ILE159
|
3.4
|
7.1
|
1.0
|
CD
|
A:ARG158
|
3.5
|
12.8
|
1.0
|
CB
|
A:ALA160
|
3.5
|
8.7
|
1.0
|
N
|
A:ILE159
|
3.5
|
7.6
|
1.0
|
HD21
|
A:ASN174
|
3.5
|
7.3
|
1.0
|
HA
|
A:ILE159
|
3.6
|
7.7
|
1.0
|
ND2
|
A:ASN174
|
3.6
|
7.6
|
1.0
|
C24
|
A:TD2301
|
3.6
|
14.9
|
0.5
|
C24
|
A:TD2301
|
3.6
|
14.5
|
0.5
|
C22
|
A:TD2301
|
3.6
|
10.7
|
0.5
|
C22
|
A:TD2301
|
3.6
|
9.7
|
0.5
|
CA
|
A:ILE159
|
3.6
|
7.5
|
1.0
|
H
|
A:ALA160
|
3.7
|
7.7
|
1.0
|
HA3
|
A:GLY252
|
3.7
|
11.3
|
1.0
|
C
|
A:ARG158
|
3.7
|
10.4
|
1.0
|
H
|
A:ILE159
|
3.7
|
7.9
|
1.0
|
HD2
|
A:ARG158
|
3.8
|
13.9
|
1.0
|
CA
|
A:ALA160
|
4.0
|
7.7
|
1.0
|
HA2
|
A:GLY252
|
4.0
|
11.4
|
1.0
|
HG2
|
A:ARG158
|
4.1
|
11.2
|
1.0
|
C23
|
A:TD2301
|
4.1
|
14.1
|
0.5
|
C23
|
A:TD2301
|
4.1
|
13.3
|
0.5
|
O
|
A:ARG158
|
4.1
|
10.4
|
1.0
|
CA
|
A:ARG158
|
4.2
|
8.1
|
1.0
|
HB3
|
A:ARG158
|
4.2
|
9.7
|
1.0
|
CA
|
A:GLY252
|
4.3
|
11.5
|
1.0
|
HB1
|
A:ALA160
|
4.3
|
8.4
|
1.0
|
O
|
A:HOH488
|
4.4
|
16.3
|
1.0
|
HB2
|
A:SER251
|
4.4
|
12.3
|
1.0
|
HA
|
A:ALA160
|
4.4
|
8.0
|
1.0
|
O
|
A:SER251
|
4.5
|
9.0
|
1.0
|
H28
|
A:TD2301
|
4.5
|
13.7
|
0.5
|
H28
|
A:TD2301
|
4.5
|
13.3
|
0.5
|
HA
|
A:ARG158
|
4.7
|
8.5
|
1.0
|
N
|
A:GLY252
|
4.7
|
10.5
|
1.0
|
CG
|
A:ASN174
|
4.7
|
6.3
|
1.0
|
NE
|
A:ARG158
|
4.7
|
21.1
|
1.0
|
C
|
A:SER251
|
4.7
|
8.9
|
1.0
|
HE
|
A:ARG158
|
4.8
|
19.4
|
1.0
|
C10
|
A:TD2301
|
4.8
|
11.0
|
0.5
|
C10
|
A:TD2301
|
4.8
|
9.4
|
0.5
|
H23
|
A:TD2301
|
5.0
|
7.8
|
0.5
|
H23
|
A:TD2301
|
5.0
|
8.1
|
0.5
|
|
Fluorine binding site 4 out
of 8 in 7cxc
Go back to
Fluorine Binding Sites List in 7cxc
Fluorine binding site 4 out
of 8 in the Structure of Mouse Galectin-3 Crd Point Mutant (V160A) in Complex with Td-139 Belonging to P121 Space Group.
Mono view
Stereo pair view
|
A full contact list of Fluorine with other atoms in the F binding
site number 4 of Structure of Mouse Galectin-3 Crd Point Mutant (V160A) in Complex with Td-139 Belonging to P121 Space Group. within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:F301
b:12.2
occ:0.50
|
F28
|
A:TD2301
|
0.0
|
12.2
|
0.5
|
F28
|
A:TD2301
|
0.0
|
11.2
|
0.5
|
C26
|
A:TD2301
|
1.3
|
10.5
|
0.5
|
C26
|
A:TD2301
|
1.3
|
10.6
|
0.5
|
C27
|
A:TD2301
|
2.3
|
9.0
|
0.5
|
C27
|
A:TD2301
|
2.3
|
8.7
|
0.5
|
C25
|
A:TD2301
|
2.4
|
12.4
|
0.5
|
C25
|
A:TD2301
|
2.4
|
12.5
|
0.5
|
H30
|
A:TD2301
|
2.5
|
9.5
|
0.5
|
H30
|
A:TD2301
|
2.5
|
9.2
|
0.5
|
HG3
|
A:ARG158
|
2.6
|
11.6
|
1.0
|
H29
|
A:TD2301
|
2.6
|
12.3
|
0.5
|
H29
|
A:TD2301
|
2.7
|
12.4
|
0.5
|
HB2
|
A:ARG158
|
2.8
|
9.7
|
1.0
|
HB2
|
A:ALA160
|
2.8
|
8.5
|
1.0
|
HD3
|
A:ARG158
|
2.9
|
13.5
|
1.0
|
HD22
|
A:ASN174
|
3.1
|
7.3
|
1.0
|
CG
|
A:ARG158
|
3.2
|
11.4
|
1.0
|
C
|
A:ILE159
|
3.2
|
7.2
|
1.0
|
HB3
|
A:ALA160
|
3.4
|
8.6
|
1.0
|
N
|
A:ALA160
|
3.4
|
8.0
|
1.0
|
CB
|
A:ARG158
|
3.4
|
9.9
|
1.0
|
O
|
A:ILE159
|
3.4
|
7.1
|
1.0
|
CB
|
A:ALA160
|
3.5
|
8.7
|
1.0
|
CD
|
A:ARG158
|
3.5
|
12.8
|
1.0
|
N
|
A:ILE159
|
3.5
|
7.6
|
1.0
|
HD21
|
A:ASN174
|
3.5
|
7.3
|
1.0
|
HA
|
A:ILE159
|
3.6
|
7.7
|
1.0
|
ND2
|
A:ASN174
|
3.6
|
7.6
|
1.0
|
C22
|
A:TD2301
|
3.6
|
10.7
|
0.5
|
C22
|
A:TD2301
|
3.6
|
9.7
|
0.5
|
C24
|
A:TD2301
|
3.6
|
14.9
|
0.5
|
C24
|
A:TD2301
|
3.6
|
14.5
|
0.5
|
H
|
A:ALA160
|
3.7
|
7.7
|
1.0
|
CA
|
A:ILE159
|
3.7
|
7.5
|
1.0
|
HA3
|
A:GLY252
|
3.7
|
11.3
|
1.0
|
H
|
A:ILE159
|
3.7
|
7.9
|
1.0
|
C
|
A:ARG158
|
3.7
|
10.4
|
1.0
|
HD2
|
A:ARG158
|
3.8
|
13.9
|
1.0
|
CA
|
A:ALA160
|
4.0
|
7.7
|
1.0
|
HA2
|
A:GLY252
|
4.1
|
11.4
|
1.0
|
HG2
|
A:ARG158
|
4.1
|
11.2
|
1.0
|
C23
|
A:TD2301
|
4.1
|
14.1
|
0.5
|
C23
|
A:TD2301
|
4.1
|
13.3
|
0.5
|
O
|
A:ARG158
|
4.1
|
10.4
|
1.0
|
CA
|
A:ARG158
|
4.2
|
8.1
|
1.0
|
HB3
|
A:ARG158
|
4.2
|
9.7
|
1.0
|
HB1
|
A:ALA160
|
4.3
|
8.4
|
1.0
|
CA
|
A:GLY252
|
4.3
|
11.5
|
1.0
|
O
|
A:HOH488
|
4.3
|
16.3
|
1.0
|
HB2
|
A:SER251
|
4.4
|
12.3
|
1.0
|
HA
|
A:ALA160
|
4.4
|
8.0
|
1.0
|
O
|
A:SER251
|
4.5
|
9.0
|
1.0
|
H28
|
A:TD2301
|
4.5
|
13.7
|
0.5
|
H28
|
A:TD2301
|
4.5
|
13.3
|
0.5
|
HA
|
A:ARG158
|
4.7
|
8.5
|
1.0
|
CG
|
A:ASN174
|
4.7
|
6.3
|
1.0
|
NE
|
A:ARG158
|
4.7
|
21.1
|
1.0
|
N
|
A:GLY252
|
4.7
|
10.5
|
1.0
|
C
|
A:SER251
|
4.8
|
8.9
|
1.0
|
HE
|
A:ARG158
|
4.8
|
19.4
|
1.0
|
C10
|
A:TD2301
|
4.8
|
11.0
|
0.5
|
C10
|
A:TD2301
|
4.8
|
9.4
|
0.5
|
H23
|
A:TD2301
|
4.9
|
7.8
|
0.5
|
H23
|
A:TD2301
|
4.9
|
8.1
|
0.5
|
|
Fluorine binding site 5 out
of 8 in 7cxc
Go back to
Fluorine Binding Sites List in 7cxc
Fluorine binding site 5 out
of 8 in the Structure of Mouse Galectin-3 Crd Point Mutant (V160A) in Complex with Td-139 Belonging to P121 Space Group.
Mono view
Stereo pair view
|
A full contact list of Fluorine with other atoms in the F binding
site number 5 of Structure of Mouse Galectin-3 Crd Point Mutant (V160A) in Complex with Td-139 Belonging to P121 Space Group. within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:F301
b:12.7
occ:0.50
|
F18
|
B:TD2301
|
0.0
|
12.7
|
0.5
|
H25
|
B:TD2301
|
0.1
|
9.2
|
0.5
|
C16
|
B:TD2301
|
1.2
|
9.2
|
0.5
|
C14
|
B:TD2301
|
1.3
|
10.4
|
0.5
|
C15
|
B:TD2301
|
2.1
|
9.7
|
0.5
|
C17
|
B:TD2301
|
2.2
|
7.8
|
0.5
|
C15
|
B:TD2301
|
2.3
|
11.5
|
0.5
|
C13
|
B:TD2301
|
2.3
|
9.4
|
0.5
|
H24
|
B:TD2301
|
2.4
|
9.2
|
0.5
|
HD22
|
B:ASN180
|
2.4
|
15.4
|
1.0
|
H26
|
B:TD2301
|
2.5
|
7.7
|
0.5
|
H8
|
B:TD2301
|
2.5
|
9.7
|
0.5
|
H24
|
B:TD2301
|
2.6
|
10.8
|
0.5
|
O
|
B:HOH488
|
2.9
|
15.3
|
1.0
|
HD21
|
B:ASN180
|
2.9
|
15.6
|
1.0
|
HG2
|
B:GLU179
|
2.9
|
9.2
|
1.0
|
ND2
|
B:ASN180
|
2.9
|
16.4
|
1.0
|
O
|
B:HOH423
|
3.0
|
12.2
|
1.0
|
OE1
|
B:GLU179
|
3.2
|
10.2
|
1.0
|
CD
|
B:GLU179
|
3.4
|
9.7
|
1.0
|
C14
|
B:TD2301
|
3.4
|
9.6
|
0.5
|
C12
|
B:TD2301
|
3.5
|
6.3
|
0.5
|
C16
|
B:TD2301
|
3.5
|
11.3
|
0.5
|
C12
|
B:TD2301
|
3.6
|
9.4
|
0.5
|
CG
|
B:GLU179
|
3.6
|
9.2
|
1.0
|
C13
|
B:TD2301
|
3.9
|
9.2
|
0.5
|
OE2
|
B:GLU179
|
4.0
|
9.6
|
1.0
|
HH12
|
B:ARG200
|
4.0
|
9.0
|
1.0
|
C17
|
B:TD2301
|
4.1
|
11.4
|
0.5
|
CG
|
B:ASN180
|
4.1
|
14.4
|
1.0
|
HG3
|
B:GLU179
|
4.2
|
9.3
|
1.0
|
HB2
|
B:ASN180
|
4.2
|
12.8
|
1.0
|
H25
|
B:TD2301
|
4.4
|
11.1
|
0.5
|
HB3
|
B:GLU179
|
4.5
|
9.0
|
1.0
|
O
|
B:GLU179
|
4.5
|
10.3
|
1.0
|
F18
|
B:TD2301
|
4.5
|
12.8
|
0.5
|
NH1
|
B:ARG200
|
4.6
|
9.2
|
1.0
|
CB
|
B:GLU179
|
4.6
|
9.1
|
1.0
|
C9
|
B:TD2301
|
4.7
|
6.1
|
0.5
|
C9
|
B:TD2301
|
4.7
|
10.1
|
0.5
|
CB
|
B:ASN180
|
4.7
|
12.3
|
1.0
|
HH22
|
B:ARG200
|
4.8
|
8.4
|
1.0
|
C
|
B:GLU179
|
4.8
|
9.5
|
1.0
|
HD2
|
B:ARG182
|
4.9
|
24.0
|
1.0
|
HH11
|
B:ARG200
|
4.9
|
8.8
|
1.0
|
H22
|
B:TD2301
|
4.9
|
9.6
|
0.5
|
H22
|
B:TD2301
|
4.9
|
6.7
|
0.5
|
|
Fluorine binding site 6 out
of 8 in 7cxc
Go back to
Fluorine Binding Sites List in 7cxc
Fluorine binding site 6 out
of 8 in the Structure of Mouse Galectin-3 Crd Point Mutant (V160A) in Complex with Td-139 Belonging to P121 Space Group.
Mono view
Stereo pair view
|
A full contact list of Fluorine with other atoms in the F binding
site number 6 of Structure of Mouse Galectin-3 Crd Point Mutant (V160A) in Complex with Td-139 Belonging to P121 Space Group. within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:F301
b:12.8
occ:0.50
|
F18
|
B:TD2301
|
0.0
|
12.8
|
0.5
|
H25
|
B:TD2301
|
0.3
|
11.1
|
0.5
|
C16
|
B:TD2301
|
1.3
|
11.3
|
0.5
|
C14
|
B:TD2301
|
1.4
|
9.6
|
0.5
|
C15
|
B:TD2301
|
2.2
|
11.5
|
0.5
|
C13
|
B:TD2301
|
2.4
|
9.2
|
0.5
|
C17
|
B:TD2301
|
2.4
|
11.4
|
0.5
|
C15
|
B:TD2301
|
2.4
|
9.7
|
0.5
|
H24
|
B:TD2301
|
2.5
|
10.8
|
0.5
|
H8
|
B:TD2301
|
2.6
|
8.3
|
0.5
|
H24
|
B:TD2301
|
2.7
|
9.2
|
0.5
|
H26
|
B:TD2301
|
2.7
|
10.8
|
0.5
|
O
|
B:HOH485
|
3.4
|
10.1
|
1.0
|
C14
|
B:TD2301
|
3.5
|
10.4
|
0.5
|
C16
|
B:TD2301
|
3.6
|
9.2
|
0.5
|
C12
|
B:TD2301
|
3.6
|
9.4
|
0.5
|
C12
|
B:TD2301
|
3.7
|
6.3
|
0.5
|
HH11
|
B:ARG200
|
3.9
|
8.8
|
1.0
|
HD3
|
B:ARG200
|
3.9
|
8.9
|
1.0
|
C13
|
B:TD2301
|
4.0
|
9.4
|
0.5
|
C17
|
B:TD2301
|
4.1
|
7.8
|
0.5
|
NH1
|
B:ARG200
|
4.2
|
9.2
|
1.0
|
HD2
|
B:ARG200
|
4.5
|
8.8
|
1.0
|
H25
|
B:TD2301
|
4.5
|
9.2
|
0.5
|
F18
|
B:TD2301
|
4.5
|
12.7
|
0.5
|
CD
|
B:ARG200
|
4.6
|
9.0
|
1.0
|
HH12
|
B:ARG200
|
4.6
|
9.0
|
1.0
|
CZ
|
B:ARG200
|
4.7
|
8.9
|
1.0
|
NE
|
B:ARG200
|
4.8
|
8.7
|
1.0
|
C9
|
B:TD2301
|
4.9
|
10.1
|
0.5
|
C9
|
B:TD2301
|
4.9
|
6.1
|
0.5
|
|
Fluorine binding site 7 out
of 8 in 7cxc
Go back to
Fluorine Binding Sites List in 7cxc
Fluorine binding site 7 out
of 8 in the Structure of Mouse Galectin-3 Crd Point Mutant (V160A) in Complex with Td-139 Belonging to P121 Space Group.
Mono view
Stereo pair view
|
A full contact list of Fluorine with other atoms in the F binding
site number 7 of Structure of Mouse Galectin-3 Crd Point Mutant (V160A) in Complex with Td-139 Belonging to P121 Space Group. within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:F301
b:11.5
occ:0.50
|
F28
|
B:TD2301
|
0.0
|
11.5
|
0.5
|
F28
|
B:TD2301
|
0.0
|
13.4
|
0.5
|
C26
|
B:TD2301
|
1.3
|
10.6
|
0.5
|
C26
|
B:TD2301
|
1.3
|
11.5
|
0.5
|
C25
|
B:TD2301
|
2.3
|
13.6
|
0.5
|
C25
|
B:TD2301
|
2.3
|
14.1
|
0.5
|
C27
|
B:TD2301
|
2.4
|
10.5
|
0.5
|
C27
|
B:TD2301
|
2.4
|
10.3
|
0.5
|
HG3
|
B:ARG158
|
2.6
|
11.7
|
1.0
|
H30
|
B:TD2301
|
2.6
|
10.9
|
0.5
|
H30
|
B:TD2301
|
2.6
|
10.6
|
0.5
|
H29
|
B:TD2301
|
2.6
|
12.6
|
0.5
|
H29
|
B:TD2301
|
2.6
|
13.2
|
0.5
|
HB2
|
B:ALA160
|
2.8
|
8.8
|
1.0
|
HB2
|
B:ARG158
|
2.8
|
9.5
|
1.0
|
HD3
|
B:ARG158
|
3.0
|
15.6
|
1.0
|
C
|
B:ILE159
|
3.1
|
8.6
|
1.0
|
HD22
|
B:ASN174
|
3.1
|
7.5
|
1.0
|
CG
|
B:ARG158
|
3.2
|
11.3
|
1.0
|
HB3
|
B:ALA160
|
3.3
|
9.0
|
1.0
|
N
|
B:ALA160
|
3.3
|
7.5
|
1.0
|
O
|
B:ILE159
|
3.4
|
7.8
|
1.0
|
CB
|
B:ALA160
|
3.4
|
9.2
|
1.0
|
CB
|
B:ARG158
|
3.4
|
9.6
|
1.0
|
N
|
B:ILE159
|
3.5
|
8.9
|
1.0
|
HD21
|
B:ASN174
|
3.5
|
7.5
|
1.0
|
HA
|
B:ILE159
|
3.5
|
8.4
|
1.0
|
CD
|
B:ARG158
|
3.6
|
15.9
|
1.0
|
ND2
|
B:ASN174
|
3.6
|
7.8
|
1.0
|
C24
|
B:TD2301
|
3.6
|
16.7
|
0.5
|
C24
|
B:TD2301
|
3.6
|
17.1
|
0.5
|
CA
|
B:ILE159
|
3.6
|
8.4
|
1.0
|
C22
|
B:TD2301
|
3.6
|
11.4
|
0.5
|
C22
|
B:TD2301
|
3.6
|
11.6
|
0.5
|
H
|
B:ALA160
|
3.6
|
7.6
|
1.0
|
C
|
B:ARG158
|
3.7
|
8.8
|
1.0
|
HA3
|
B:GLY252
|
3.7
|
10.6
|
1.0
|
H
|
B:ILE159
|
3.8
|
8.8
|
1.0
|
HD2
|
B:ARG158
|
3.9
|
16.0
|
1.0
|
CA
|
B:ALA160
|
3.9
|
7.5
|
1.0
|
HG2
|
B:ARG158
|
4.1
|
11.4
|
1.0
|
O
|
B:ARG158
|
4.2
|
10.2
|
1.0
|
C23
|
B:TD2301
|
4.2
|
16.0
|
0.5
|
C23
|
B:TD2301
|
4.2
|
16.0
|
0.5
|
HB3
|
B:ARG158
|
4.2
|
9.3
|
1.0
|
CA
|
B:ARG158
|
4.2
|
7.6
|
1.0
|
HA2
|
B:GLY252
|
4.2
|
10.4
|
1.0
|
HB1
|
B:ALA160
|
4.2
|
8.8
|
1.0
|
HA
|
B:ALA160
|
4.2
|
7.7
|
1.0
|
HB2
|
B:SER251
|
4.3
|
12.2
|
0.5
|
O
|
B:HOH492
|
4.4
|
17.7
|
1.0
|
CA
|
B:GLY252
|
4.4
|
10.4
|
1.0
|
O
|
B:SER251
|
4.4
|
9.2
|
0.5
|
H28
|
B:TD2301
|
4.5
|
15.5
|
0.5
|
O
|
B:SER251
|
4.5
|
8.9
|
0.5
|
H28
|
B:TD2301
|
4.5
|
15.8
|
0.5
|
OG
|
B:SER251
|
4.6
|
9.8
|
0.5
|
HA
|
B:ARG158
|
4.6
|
8.0
|
1.0
|
CG
|
B:ASN174
|
4.7
|
7.0
|
1.0
|
HG
|
B:SER251
|
4.8
|
9.9
|
0.5
|
C
|
B:SER251
|
4.8
|
9.8
|
0.5
|
C
|
B:SER251
|
4.8
|
9.8
|
0.5
|
N
|
B:GLY252
|
4.8
|
10.3
|
1.0
|
C10
|
B:TD2301
|
4.8
|
9.6
|
0.5
|
C10
|
B:TD2301
|
4.8
|
10.4
|
0.5
|
NE
|
B:ARG158
|
4.9
|
21.9
|
1.0
|
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Fluorine binding site 8 out
of 8 in 7cxc
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Fluorine Binding Sites List in 7cxc
Fluorine binding site 8 out
of 8 in the Structure of Mouse Galectin-3 Crd Point Mutant (V160A) in Complex with Td-139 Belonging to P121 Space Group.
Mono view
Stereo pair view
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A full contact list of Fluorine with other atoms in the F binding
site number 8 of Structure of Mouse Galectin-3 Crd Point Mutant (V160A) in Complex with Td-139 Belonging to P121 Space Group. within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:F301
b:13.4
occ:0.50
|
F28
|
B:TD2301
|
0.0
|
13.4
|
0.5
|
F28
|
B:TD2301
|
0.0
|
11.5
|
0.5
|
C26
|
B:TD2301
|
1.3
|
10.6
|
0.5
|
C26
|
B:TD2301
|
1.3
|
11.5
|
0.5
|
C25
|
B:TD2301
|
2.3
|
13.6
|
0.5
|
C25
|
B:TD2301
|
2.3
|
14.1
|
0.5
|
C27
|
B:TD2301
|
2.4
|
10.5
|
0.5
|
C27
|
B:TD2301
|
2.4
|
10.3
|
0.5
|
HG3
|
B:ARG158
|
2.5
|
11.7
|
1.0
|
H30
|
B:TD2301
|
2.6
|
10.9
|
0.5
|
H30
|
B:TD2301
|
2.6
|
10.6
|
0.5
|
H29
|
B:TD2301
|
2.6
|
12.6
|
0.5
|
H29
|
B:TD2301
|
2.6
|
13.2
|
0.5
|
HB2
|
B:ARG158
|
2.8
|
9.5
|
1.0
|
HB2
|
B:ALA160
|
2.8
|
8.8
|
1.0
|
HD3
|
B:ARG158
|
3.0
|
15.6
|
1.0
|
C
|
B:ILE159
|
3.1
|
8.6
|
1.0
|
HD22
|
B:ASN174
|
3.1
|
7.5
|
1.0
|
CG
|
B:ARG158
|
3.2
|
11.3
|
1.0
|
HB3
|
B:ALA160
|
3.3
|
9.0
|
1.0
|
N
|
B:ALA160
|
3.4
|
7.5
|
1.0
|
O
|
B:ILE159
|
3.4
|
7.8
|
1.0
|
CB
|
B:ARG158
|
3.4
|
9.6
|
1.0
|
CB
|
B:ALA160
|
3.4
|
9.2
|
1.0
|
N
|
B:ILE159
|
3.5
|
8.9
|
1.0
|
CD
|
B:ARG158
|
3.5
|
15.9
|
1.0
|
HA
|
B:ILE159
|
3.5
|
8.4
|
1.0
|
HD21
|
B:ASN174
|
3.6
|
7.5
|
1.0
|
C24
|
B:TD2301
|
3.6
|
16.7
|
0.5
|
ND2
|
B:ASN174
|
3.6
|
7.8
|
1.0
|
C24
|
B:TD2301
|
3.6
|
17.1
|
0.5
|
CA
|
B:ILE159
|
3.6
|
8.4
|
1.0
|
C22
|
B:TD2301
|
3.6
|
11.4
|
0.5
|
C22
|
B:TD2301
|
3.6
|
11.6
|
0.5
|
H
|
B:ALA160
|
3.6
|
7.6
|
1.0
|
C
|
B:ARG158
|
3.7
|
8.8
|
1.0
|
HA3
|
B:GLY252
|
3.7
|
10.6
|
1.0
|
H
|
B:ILE159
|
3.8
|
8.8
|
1.0
|
HD2
|
B:ARG158
|
3.8
|
16.0
|
1.0
|
CA
|
B:ALA160
|
3.9
|
7.5
|
1.0
|
HG2
|
B:ARG158
|
4.0
|
11.4
|
1.0
|
O
|
B:ARG158
|
4.1
|
10.2
|
1.0
|
C23
|
B:TD2301
|
4.2
|
16.0
|
0.5
|
C23
|
B:TD2301
|
4.2
|
16.0
|
0.5
|
HB3
|
B:ARG158
|
4.2
|
9.3
|
1.0
|
CA
|
B:ARG158
|
4.2
|
7.6
|
1.0
|
HA2
|
B:GLY252
|
4.2
|
10.4
|
1.0
|
HB1
|
B:ALA160
|
4.3
|
8.8
|
1.0
|
HA
|
B:ALA160
|
4.3
|
7.7
|
1.0
|
HB2
|
B:SER251
|
4.3
|
12.2
|
0.5
|
O
|
B:HOH492
|
4.4
|
17.7
|
1.0
|
CA
|
B:GLY252
|
4.4
|
10.4
|
1.0
|
O
|
B:SER251
|
4.4
|
9.2
|
0.5
|
H28
|
B:TD2301
|
4.5
|
15.5
|
0.5
|
H28
|
B:TD2301
|
4.5
|
15.8
|
0.5
|
O
|
B:SER251
|
4.5
|
8.9
|
0.5
|
OG
|
B:SER251
|
4.6
|
9.8
|
0.5
|
HA
|
B:ARG158
|
4.6
|
8.0
|
1.0
|
CG
|
B:ASN174
|
4.7
|
7.0
|
1.0
|
HG
|
B:SER251
|
4.8
|
9.9
|
0.5
|
C
|
B:SER251
|
4.8
|
9.8
|
0.5
|
C
|
B:SER251
|
4.8
|
9.8
|
0.5
|
N
|
B:GLY252
|
4.8
|
10.3
|
1.0
|
C10
|
B:TD2301
|
4.8
|
9.6
|
0.5
|
C10
|
B:TD2301
|
4.8
|
10.4
|
0.5
|
NE
|
B:ARG158
|
4.9
|
21.9
|
1.0
|
HE
|
B:ARG158
|
5.0
|
22.1
|
1.0
|
|
Reference:
A.Kumar,
M.Paul,
M.Panda,
S.Jayaram,
N.Kalidindi,
H.Sale,
M.Vetrichelvan,
A.Gupta,
A.Mathur,
B.Beno,
A.Regueiro-Ren,
D.Cheng,
M.Ramarao,
K.Ghosh.
Molecular Mechanism of Interspecies Differences in the Binding Affinity of TD139 to Galectin-3. Glycobiology 2021.
ISSN: ESSN 1460-2423
PubMed: 34228782
DOI: 10.1093/GLYCOB/CWAB072
Page generated: Fri Aug 2 06:18:18 2024
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