Fluorine in PDB 7dfu: Crystal Structure of Xanthomonas Oryzae Clpp S68Y in Complex with ADEP4.
Enzymatic activity of Crystal Structure of Xanthomonas Oryzae Clpp S68Y in Complex with ADEP4.
All present enzymatic activity of Crystal Structure of Xanthomonas Oryzae Clpp S68Y in Complex with ADEP4.:
3.4.21.92;
Protein crystallography data
The structure of Crystal Structure of Xanthomonas Oryzae Clpp S68Y in Complex with ADEP4., PDB code: 7dfu
was solved by
C.-G.Yang,
T.Yang,
with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:
Resolution Low / High (Å)
|
29.69 /
1.90
|
Space group
|
P 42 21 2
|
Cell size a, b, c (Å), α, β, γ (°)
|
132.498,
132.498,
187.833,
90,
90,
90
|
R / Rfree (%)
|
21.7 /
24.3
|
Other elements in 7dfu:
The structure of Crystal Structure of Xanthomonas Oryzae Clpp S68Y in Complex with ADEP4. also contains other interesting chemical elements:
Fluorine Binding Sites:
Pages:
>>> Page 1 <<<
Page 2, Binding sites: 11 -
14;
Binding sites:
The binding sites of Fluorine atom in the Crystal Structure of Xanthomonas Oryzae Clpp S68Y in Complex with ADEP4.
(pdb code 7dfu). This binding sites where shown within
5.0 Angstroms radius around Fluorine atom.
In total 14 binding sites of Fluorine where determined in the
Crystal Structure of Xanthomonas Oryzae Clpp S68Y in Complex with ADEP4., PDB code: 7dfu:
Jump to Fluorine binding site number:
1;
2;
3;
4;
5;
6;
7;
8;
9;
10;
Fluorine binding site 1 out
of 14 in 7dfu
Go back to
Fluorine Binding Sites List in 7dfu
Fluorine binding site 1 out
of 14 in the Crystal Structure of Xanthomonas Oryzae Clpp S68Y in Complex with ADEP4.
Mono view
Stereo pair view
|
A full contact list of Fluorine with other atoms in the F binding
site number 1 of Crystal Structure of Xanthomonas Oryzae Clpp S68Y in Complex with ADEP4. within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:F401
b:24.6
occ:1.00
|
F1
|
A:EZA401
|
0.0
|
24.6
|
1.0
|
C12
|
A:EZA401
|
1.3
|
22.4
|
1.0
|
C13
|
A:EZA401
|
2.4
|
21.6
|
1.0
|
C11
|
A:EZA401
|
2.4
|
21.6
|
1.0
|
CD1
|
A:LEU122
|
3.1
|
27.6
|
1.0
|
CB
|
B:TYR90
|
3.2
|
15.7
|
1.0
|
CA
|
B:THR87
|
3.2
|
13.0
|
1.0
|
O
|
B:ASP86
|
3.4
|
10.1
|
1.0
|
C14
|
A:EZA401
|
3.6
|
25.2
|
1.0
|
C10
|
A:EZA401
|
3.6
|
23.6
|
1.0
|
N
|
B:THR87
|
3.7
|
12.3
|
1.0
|
C
|
B:ASP86
|
3.8
|
12.3
|
1.0
|
CG
|
B:TYR90
|
3.8
|
21.8
|
1.0
|
OG1
|
B:THR87
|
3.8
|
9.3
|
1.0
|
CG
|
A:LEU122
|
3.9
|
20.2
|
1.0
|
CB
|
B:THR87
|
3.9
|
11.1
|
1.0
|
CD2
|
B:TYR90
|
4.1
|
24.0
|
1.0
|
C15
|
A:EZA401
|
4.1
|
25.1
|
1.0
|
CG2
|
B:THR87
|
4.2
|
12.5
|
1.0
|
C
|
B:THR87
|
4.2
|
14.1
|
1.0
|
O
|
B:THR87
|
4.2
|
17.9
|
1.0
|
CD2
|
A:LEU122
|
4.5
|
22.1
|
1.0
|
CA
|
B:TYR90
|
4.6
|
19.2
|
1.0
|
CD1
|
B:TYR90
|
4.7
|
23.6
|
1.0
|
F2
|
A:EZA401
|
4.7
|
27.4
|
1.0
|
O
|
B:HOH524
|
4.8
|
14.7
|
1.0
|
N
|
B:TYR90
|
4.8
|
18.1
|
1.0
|
CB
|
B:ASP86
|
4.9
|
9.2
|
1.0
|
C9
|
A:EZA401
|
4.9
|
24.8
|
1.0
|
CA
|
B:ASP86
|
4.9
|
11.7
|
1.0
|
|
Fluorine binding site 2 out
of 14 in 7dfu
Go back to
Fluorine Binding Sites List in 7dfu
Fluorine binding site 2 out
of 14 in the Crystal Structure of Xanthomonas Oryzae Clpp S68Y in Complex with ADEP4.
Mono view
Stereo pair view
|
A full contact list of Fluorine with other atoms in the F binding
site number 2 of Crystal Structure of Xanthomonas Oryzae Clpp S68Y in Complex with ADEP4. within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:F401
b:27.4
occ:1.00
|
F2
|
A:EZA401
|
0.0
|
27.4
|
1.0
|
C14
|
A:EZA401
|
1.3
|
25.2
|
1.0
|
C13
|
A:EZA401
|
2.4
|
21.6
|
1.0
|
C15
|
A:EZA401
|
2.4
|
25.1
|
1.0
|
CD2
|
A:TYR70
|
3.2
|
22.5
|
1.0
|
CE2
|
A:TYR70
|
3.2
|
23.0
|
1.0
|
CD1
|
B:LEU56
|
3.5
|
14.2
|
1.0
|
CG2
|
A:VAL100
|
3.5
|
21.5
|
1.0
|
C12
|
A:EZA401
|
3.6
|
22.4
|
1.0
|
C10
|
A:EZA401
|
3.6
|
23.6
|
1.0
|
CG1
|
B:VAL52
|
3.8
|
11.2
|
1.0
|
CG
|
A:TYR70
|
4.0
|
21.3
|
1.0
|
CZ
|
A:TYR70
|
4.0
|
22.1
|
1.0
|
C11
|
A:EZA401
|
4.1
|
21.6
|
1.0
|
CG
|
B:LEU56
|
4.5
|
18.3
|
1.0
|
CD2
|
B:LEU56
|
4.5
|
19.5
|
1.0
|
CG1
|
A:VAL100
|
4.6
|
22.6
|
1.0
|
OG1
|
B:THR87
|
4.6
|
9.3
|
1.0
|
CB
|
A:VAL100
|
4.6
|
21.6
|
1.0
|
CD1
|
A:TYR70
|
4.7
|
24.7
|
1.0
|
OH
|
A:TYR70
|
4.7
|
22.0
|
1.0
|
CE1
|
A:TYR70
|
4.7
|
23.0
|
1.0
|
CB
|
A:TYR70
|
4.7
|
13.5
|
1.0
|
CG2
|
A:ILE98
|
4.7
|
16.1
|
1.0
|
F1
|
A:EZA401
|
4.7
|
24.6
|
1.0
|
C9
|
A:EZA401
|
4.9
|
24.8
|
1.0
|
|
Fluorine binding site 3 out
of 14 in 7dfu
Go back to
Fluorine Binding Sites List in 7dfu
Fluorine binding site 3 out
of 14 in the Crystal Structure of Xanthomonas Oryzae Clpp S68Y in Complex with ADEP4.
Mono view
Stereo pair view
|
A full contact list of Fluorine with other atoms in the F binding
site number 3 of Crystal Structure of Xanthomonas Oryzae Clpp S68Y in Complex with ADEP4. within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:F401
b:41.5
occ:1.00
|
F1
|
B:EZA401
|
0.0
|
41.5
|
1.0
|
C12
|
B:EZA401
|
1.3
|
40.7
|
1.0
|
C13
|
B:EZA401
|
2.4
|
40.1
|
1.0
|
C11
|
B:EZA401
|
2.4
|
41.2
|
1.0
|
CB
|
C:TYR90
|
3.1
|
25.4
|
1.0
|
CA
|
C:THR87
|
3.3
|
14.9
|
1.0
|
O
|
C:ASP86
|
3.6
|
14.7
|
1.0
|
C14
|
B:EZA401
|
3.6
|
41.9
|
1.0
|
C10
|
B:EZA401
|
3.6
|
41.0
|
1.0
|
CG
|
C:TYR90
|
3.6
|
33.8
|
1.0
|
CD2
|
B:LEU122
|
3.7
|
17.8
|
1.0
|
CD1
|
B:LEU122
|
3.7
|
21.6
|
1.0
|
CD2
|
C:TYR90
|
3.8
|
38.3
|
1.0
|
N
|
C:THR87
|
3.9
|
13.6
|
1.0
|
OG1
|
C:THR87
|
4.0
|
15.4
|
1.0
|
CB
|
C:THR87
|
4.0
|
16.7
|
1.0
|
C
|
C:ASP86
|
4.0
|
14.1
|
1.0
|
O
|
C:THR87
|
4.0
|
18.4
|
1.0
|
CG2
|
C:THR87
|
4.1
|
16.8
|
1.0
|
C15
|
B:EZA401
|
4.1
|
41.8
|
1.0
|
C
|
C:THR87
|
4.2
|
16.8
|
1.0
|
CG
|
B:LEU122
|
4.3
|
16.2
|
1.0
|
CA
|
C:TYR90
|
4.4
|
22.3
|
1.0
|
CD1
|
C:TYR90
|
4.7
|
36.8
|
1.0
|
N
|
C:TYR90
|
4.7
|
19.8
|
1.0
|
F2
|
B:EZA401
|
4.7
|
43.3
|
1.0
|
CG2
|
C:ILE91
|
4.8
|
16.1
|
1.0
|
N
|
C:ILE91
|
4.8
|
22.6
|
1.0
|
C9
|
B:EZA401
|
4.9
|
40.8
|
1.0
|
CE2
|
C:TYR90
|
4.9
|
41.8
|
1.0
|
C
|
C:TYR90
|
5.0
|
21.6
|
1.0
|
O
|
C:HOH522
|
5.0
|
13.1
|
1.0
|
|
Fluorine binding site 4 out
of 14 in 7dfu
Go back to
Fluorine Binding Sites List in 7dfu
Fluorine binding site 4 out
of 14 in the Crystal Structure of Xanthomonas Oryzae Clpp S68Y in Complex with ADEP4.
Mono view
Stereo pair view
|
A full contact list of Fluorine with other atoms in the F binding
site number 4 of Crystal Structure of Xanthomonas Oryzae Clpp S68Y in Complex with ADEP4. within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:F401
b:43.3
occ:1.00
|
F2
|
B:EZA401
|
0.0
|
43.3
|
1.0
|
C14
|
B:EZA401
|
1.3
|
41.9
|
1.0
|
C13
|
B:EZA401
|
2.4
|
40.1
|
1.0
|
C15
|
B:EZA401
|
2.4
|
41.8
|
1.0
|
CD2
|
B:TYR70
|
3.0
|
34.9
|
1.0
|
CE2
|
B:TYR70
|
3.2
|
37.2
|
1.0
|
CG2
|
B:VAL100
|
3.4
|
29.3
|
1.0
|
CD1
|
C:LEU56
|
3.6
|
17.5
|
1.0
|
C12
|
B:EZA401
|
3.6
|
40.7
|
1.0
|
C10
|
B:EZA401
|
3.6
|
41.0
|
1.0
|
CG
|
B:TYR70
|
3.8
|
31.0
|
1.0
|
CZ
|
B:TYR70
|
4.0
|
35.5
|
1.0
|
CG1
|
C:VAL52
|
4.1
|
12.1
|
1.0
|
C11
|
B:EZA401
|
4.1
|
41.2
|
1.0
|
CD2
|
C:LEU56
|
4.5
|
18.3
|
1.0
|
CD1
|
B:TYR70
|
4.5
|
34.3
|
1.0
|
CB
|
B:TYR70
|
4.5
|
21.1
|
1.0
|
CG2
|
B:ILE98
|
4.5
|
12.4
|
1.0
|
CG
|
C:LEU56
|
4.5
|
18.4
|
1.0
|
CE1
|
B:TYR70
|
4.6
|
35.9
|
1.0
|
CB
|
B:VAL100
|
4.6
|
25.0
|
1.0
|
OG1
|
C:THR87
|
4.7
|
15.4
|
1.0
|
CG1
|
B:VAL100
|
4.7
|
27.9
|
1.0
|
CD1
|
B:LEU122
|
4.7
|
21.6
|
1.0
|
OH
|
B:TYR70
|
4.7
|
31.6
|
1.0
|
F1
|
B:EZA401
|
4.7
|
41.5
|
1.0
|
C9
|
B:EZA401
|
4.9
|
40.8
|
1.0
|
|
Fluorine binding site 5 out
of 14 in 7dfu
Go back to
Fluorine Binding Sites List in 7dfu
Fluorine binding site 5 out
of 14 in the Crystal Structure of Xanthomonas Oryzae Clpp S68Y in Complex with ADEP4.
Mono view
Stereo pair view
|
A full contact list of Fluorine with other atoms in the F binding
site number 5 of Crystal Structure of Xanthomonas Oryzae Clpp S68Y in Complex with ADEP4. within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
C:F401
b:29.5
occ:1.00
|
F1
|
C:EZA401
|
0.0
|
29.5
|
1.0
|
C12
|
C:EZA401
|
1.3
|
28.4
|
1.0
|
C13
|
C:EZA401
|
2.4
|
25.6
|
1.0
|
C11
|
C:EZA401
|
2.4
|
30.2
|
1.0
|
CB
|
D:TYR90
|
3.2
|
17.9
|
1.0
|
CA
|
D:THR87
|
3.3
|
11.3
|
1.0
|
CD1
|
C:LEU122
|
3.3
|
15.6
|
1.0
|
O
|
D:ASP86
|
3.6
|
6.4
|
1.0
|
C14
|
C:EZA401
|
3.6
|
28.1
|
1.0
|
C10
|
C:EZA401
|
3.6
|
30.7
|
1.0
|
CG
|
D:TYR90
|
3.7
|
22.7
|
1.0
|
OG1
|
D:THR87
|
3.8
|
9.8
|
1.0
|
N
|
D:THR87
|
3.8
|
7.6
|
1.0
|
CD2
|
D:TYR90
|
3.9
|
25.3
|
1.0
|
CB
|
D:THR87
|
3.9
|
11.0
|
1.0
|
C
|
D:ASP86
|
3.9
|
8.7
|
1.0
|
CG
|
C:LEU122
|
4.0
|
16.8
|
1.0
|
C15
|
C:EZA401
|
4.1
|
29.2
|
1.0
|
CG2
|
D:THR87
|
4.1
|
7.2
|
1.0
|
O
|
D:THR87
|
4.1
|
16.0
|
1.0
|
C
|
D:THR87
|
4.2
|
15.4
|
1.0
|
CD2
|
C:LEU122
|
4.5
|
17.3
|
1.0
|
CA
|
D:TYR90
|
4.5
|
16.3
|
1.0
|
CD1
|
D:TYR90
|
4.7
|
27.1
|
1.0
|
F2
|
C:EZA401
|
4.7
|
27.1
|
1.0
|
N
|
D:TYR90
|
4.8
|
14.6
|
1.0
|
C9
|
C:EZA401
|
4.9
|
32.8
|
1.0
|
CG2
|
D:ILE91
|
5.0
|
10.0
|
1.0
|
N
|
D:ILE91
|
5.0
|
14.3
|
1.0
|
|
Fluorine binding site 6 out
of 14 in 7dfu
Go back to
Fluorine Binding Sites List in 7dfu
Fluorine binding site 6 out
of 14 in the Crystal Structure of Xanthomonas Oryzae Clpp S68Y in Complex with ADEP4.
Mono view
Stereo pair view
|
A full contact list of Fluorine with other atoms in the F binding
site number 6 of Crystal Structure of Xanthomonas Oryzae Clpp S68Y in Complex with ADEP4. within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
C:F401
b:27.1
occ:1.00
|
F2
|
C:EZA401
|
0.0
|
27.1
|
1.0
|
C14
|
C:EZA401
|
1.3
|
28.1
|
1.0
|
C13
|
C:EZA401
|
2.4
|
25.6
|
1.0
|
C15
|
C:EZA401
|
2.4
|
29.2
|
1.0
|
CD2
|
C:TYR70
|
3.0
|
31.0
|
1.0
|
CE2
|
C:TYR70
|
3.2
|
33.9
|
1.0
|
CG2
|
C:VAL100
|
3.4
|
24.5
|
1.0
|
C12
|
C:EZA401
|
3.6
|
28.4
|
1.0
|
C10
|
C:EZA401
|
3.6
|
30.7
|
1.0
|
CD1
|
D:LEU56
|
3.7
|
10.5
|
1.0
|
CG
|
C:TYR70
|
3.8
|
26.8
|
1.0
|
CG1
|
D:VAL52
|
4.0
|
10.0
|
1.0
|
CZ
|
C:TYR70
|
4.0
|
32.8
|
1.0
|
C11
|
C:EZA401
|
4.1
|
30.2
|
1.0
|
CB
|
C:TYR70
|
4.4
|
19.0
|
1.0
|
CD1
|
C:TYR70
|
4.5
|
29.8
|
1.0
|
CG2
|
C:ILE98
|
4.5
|
13.3
|
1.0
|
CB
|
C:VAL100
|
4.5
|
20.2
|
1.0
|
CD2
|
D:LEU56
|
4.6
|
13.4
|
1.0
|
CG1
|
C:VAL100
|
4.6
|
21.6
|
1.0
|
CE1
|
C:TYR70
|
4.6
|
31.5
|
1.0
|
CG
|
D:LEU56
|
4.6
|
12.2
|
1.0
|
OG1
|
D:THR87
|
4.7
|
9.8
|
1.0
|
F1
|
C:EZA401
|
4.7
|
29.5
|
1.0
|
OH
|
C:TYR70
|
4.8
|
32.3
|
1.0
|
C9
|
C:EZA401
|
4.9
|
32.8
|
1.0
|
|
Fluorine binding site 7 out
of 14 in 7dfu
Go back to
Fluorine Binding Sites List in 7dfu
Fluorine binding site 7 out
of 14 in the Crystal Structure of Xanthomonas Oryzae Clpp S68Y in Complex with ADEP4.
Mono view
Stereo pair view
|
A full contact list of Fluorine with other atoms in the F binding
site number 7 of Crystal Structure of Xanthomonas Oryzae Clpp S68Y in Complex with ADEP4. within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
D:F401
b:30.4
occ:1.00
|
F1
|
D:EZA401
|
0.0
|
30.4
|
1.0
|
C12
|
D:EZA401
|
1.3
|
31.3
|
1.0
|
C13
|
D:EZA401
|
2.4
|
29.1
|
1.0
|
C11
|
D:EZA401
|
2.4
|
31.6
|
1.0
|
CB
|
E:TYR90
|
3.1
|
24.0
|
1.0
|
CA
|
E:THR87
|
3.2
|
18.3
|
1.0
|
O
|
E:ASP86
|
3.3
|
17.0
|
1.0
|
CD2
|
D:LEU122
|
3.4
|
26.2
|
1.0
|
CD1
|
D:LEU122
|
3.4
|
28.0
|
1.0
|
C14
|
D:EZA401
|
3.6
|
29.3
|
1.0
|
C10
|
D:EZA401
|
3.6
|
31.1
|
1.0
|
N
|
E:THR87
|
3.7
|
15.2
|
1.0
|
C
|
E:ASP86
|
3.7
|
17.2
|
1.0
|
CG
|
E:TYR90
|
3.8
|
30.4
|
1.0
|
OG1
|
E:THR87
|
3.9
|
16.7
|
1.0
|
CB
|
E:THR87
|
4.0
|
16.5
|
1.0
|
CG
|
D:LEU122
|
4.0
|
24.8
|
1.0
|
CD2
|
E:TYR90
|
4.1
|
34.1
|
1.0
|
C15
|
D:EZA401
|
4.1
|
30.3
|
1.0
|
O
|
E:THR87
|
4.2
|
19.5
|
1.0
|
C
|
E:THR87
|
4.2
|
20.1
|
1.0
|
CG2
|
E:THR87
|
4.3
|
18.1
|
1.0
|
CA
|
E:TYR90
|
4.4
|
22.1
|
1.0
|
N
|
E:TYR90
|
4.7
|
16.9
|
1.0
|
O
|
E:HOH545
|
4.7
|
15.4
|
1.0
|
F2
|
D:EZA401
|
4.7
|
28.8
|
1.0
|
CD1
|
E:TYR90
|
4.8
|
35.0
|
1.0
|
CB
|
E:ASP86
|
4.8
|
14.4
|
1.0
|
C9
|
D:EZA401
|
4.9
|
32.3
|
1.0
|
CA
|
E:ASP86
|
4.9
|
14.5
|
1.0
|
|
Fluorine binding site 8 out
of 14 in 7dfu
Go back to
Fluorine Binding Sites List in 7dfu
Fluorine binding site 8 out
of 14 in the Crystal Structure of Xanthomonas Oryzae Clpp S68Y in Complex with ADEP4.
Mono view
Stereo pair view
|
A full contact list of Fluorine with other atoms in the F binding
site number 8 of Crystal Structure of Xanthomonas Oryzae Clpp S68Y in Complex with ADEP4. within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
D:F401
b:28.8
occ:1.00
|
F2
|
D:EZA401
|
0.0
|
28.8
|
1.0
|
C14
|
D:EZA401
|
1.3
|
29.3
|
1.0
|
C13
|
D:EZA401
|
2.4
|
29.1
|
1.0
|
C15
|
D:EZA401
|
2.4
|
30.3
|
1.0
|
CD2
|
D:TYR70
|
3.1
|
33.7
|
1.0
|
CE2
|
D:TYR70
|
3.1
|
36.9
|
1.0
|
CD1
|
E:LEU56
|
3.5
|
19.3
|
1.0
|
CG2
|
D:VAL100
|
3.6
|
24.0
|
1.0
|
C12
|
D:EZA401
|
3.6
|
31.3
|
1.0
|
C10
|
D:EZA401
|
3.6
|
31.1
|
1.0
|
CG1
|
E:VAL52
|
3.9
|
10.3
|
1.0
|
CG
|
D:TYR70
|
3.9
|
31.1
|
1.0
|
CZ
|
D:TYR70
|
4.0
|
39.0
|
1.0
|
C11
|
D:EZA401
|
4.1
|
31.6
|
1.0
|
CD2
|
E:LEU56
|
4.3
|
19.1
|
1.0
|
CG
|
E:LEU56
|
4.4
|
18.6
|
1.0
|
OG1
|
E:THR87
|
4.5
|
16.7
|
1.0
|
CB
|
D:TYR70
|
4.6
|
21.6
|
1.0
|
CD1
|
D:TYR70
|
4.6
|
37.2
|
1.0
|
CE1
|
D:TYR70
|
4.7
|
40.0
|
1.0
|
CB
|
D:VAL100
|
4.7
|
22.6
|
1.0
|
CG1
|
D:VAL100
|
4.7
|
24.4
|
1.0
|
F1
|
D:EZA401
|
4.7
|
30.4
|
1.0
|
OH
|
D:TYR70
|
4.7
|
37.8
|
1.0
|
CD1
|
D:LEU122
|
4.8
|
28.0
|
1.0
|
CG2
|
D:ILE98
|
4.9
|
16.6
|
1.0
|
C9
|
D:EZA401
|
4.9
|
32.3
|
1.0
|
|
Fluorine binding site 9 out
of 14 in 7dfu
Go back to
Fluorine Binding Sites List in 7dfu
Fluorine binding site 9 out
of 14 in the Crystal Structure of Xanthomonas Oryzae Clpp S68Y in Complex with ADEP4.
Mono view
Stereo pair view
|
A full contact list of Fluorine with other atoms in the F binding
site number 9 of Crystal Structure of Xanthomonas Oryzae Clpp S68Y in Complex with ADEP4. within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
E:F401
b:41.8
occ:1.00
|
F1
|
E:EZA401
|
0.0
|
41.8
|
1.0
|
C12
|
E:EZA401
|
1.3
|
41.0
|
1.0
|
C13
|
E:EZA401
|
2.4
|
39.1
|
1.0
|
C11
|
E:EZA401
|
2.4
|
41.8
|
1.0
|
CB
|
F:TYR90
|
3.2
|
29.3
|
1.0
|
CA
|
F:THR87
|
3.3
|
14.9
|
1.0
|
CD2
|
E:LEU122
|
3.5
|
24.1
|
1.0
|
CD1
|
E:LEU122
|
3.6
|
27.7
|
1.0
|
O
|
F:ASP86
|
3.6
|
13.6
|
1.0
|
C14
|
E:EZA401
|
3.6
|
38.4
|
1.0
|
C10
|
E:EZA401
|
3.6
|
41.5
|
1.0
|
CG
|
F:TYR90
|
3.7
|
31.9
|
1.0
|
N
|
F:THR87
|
3.8
|
14.2
|
1.0
|
OG1
|
F:THR87
|
3.8
|
15.2
|
1.0
|
CB
|
F:THR87
|
3.9
|
15.1
|
1.0
|
CD2
|
F:TYR90
|
3.9
|
33.4
|
1.0
|
C
|
F:ASP86
|
3.9
|
17.0
|
1.0
|
CG2
|
F:THR87
|
4.1
|
15.9
|
1.0
|
C15
|
E:EZA401
|
4.1
|
39.5
|
1.0
|
CG
|
E:LEU122
|
4.1
|
23.1
|
1.0
|
O
|
F:THR87
|
4.2
|
20.4
|
1.0
|
C
|
F:THR87
|
4.2
|
17.1
|
1.0
|
CA
|
F:TYR90
|
4.5
|
26.0
|
1.0
|
F2
|
E:EZA401
|
4.7
|
36.8
|
1.0
|
CD1
|
F:TYR90
|
4.7
|
35.6
|
1.0
|
N
|
F:TYR90
|
4.8
|
23.5
|
1.0
|
C9
|
E:EZA401
|
4.9
|
43.8
|
1.0
|
|
Fluorine binding site 10 out
of 14 in 7dfu
Go back to
Fluorine Binding Sites List in 7dfu
Fluorine binding site 10 out
of 14 in the Crystal Structure of Xanthomonas Oryzae Clpp S68Y in Complex with ADEP4.
Mono view
Stereo pair view
|
A full contact list of Fluorine with other atoms in the F binding
site number 10 of Crystal Structure of Xanthomonas Oryzae Clpp S68Y in Complex with ADEP4. within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
E:F401
b:36.8
occ:1.00
|
F2
|
E:EZA401
|
0.0
|
36.8
|
1.0
|
C14
|
E:EZA401
|
1.3
|
38.4
|
1.0
|
C13
|
E:EZA401
|
2.4
|
39.1
|
1.0
|
C15
|
E:EZA401
|
2.4
|
39.5
|
1.0
|
CD2
|
E:TYR70
|
3.0
|
36.7
|
1.0
|
CE2
|
E:TYR70
|
3.0
|
38.5
|
1.0
|
CG2
|
E:VAL100
|
3.5
|
25.9
|
1.0
|
CD1
|
F:LEU56
|
3.6
|
21.2
|
1.0
|
C12
|
E:EZA401
|
3.6
|
41.0
|
1.0
|
C10
|
E:EZA401
|
3.6
|
41.5
|
1.0
|
CG
|
E:TYR70
|
3.8
|
32.6
|
1.0
|
CZ
|
E:TYR70
|
3.8
|
38.4
|
1.0
|
C11
|
E:EZA401
|
4.1
|
41.8
|
1.0
|
CG1
|
F:VAL52
|
4.1
|
11.6
|
1.0
|
CD2
|
F:LEU56
|
4.4
|
18.8
|
1.0
|
CD1
|
E:TYR70
|
4.4
|
36.0
|
1.0
|
CG2
|
E:ILE98
|
4.5
|
15.0
|
1.0
|
CE1
|
E:TYR70
|
4.5
|
38.5
|
1.0
|
CG
|
F:LEU56
|
4.5
|
17.8
|
1.0
|
CB
|
E:TYR70
|
4.5
|
21.6
|
1.0
|
OH
|
E:TYR70
|
4.6
|
34.1
|
1.0
|
F1
|
E:EZA401
|
4.7
|
41.8
|
1.0
|
CB
|
E:VAL100
|
4.7
|
20.5
|
1.0
|
CD1
|
E:LEU122
|
4.7
|
27.7
|
1.0
|
OG1
|
F:THR87
|
4.8
|
15.2
|
1.0
|
CG1
|
E:VAL100
|
4.8
|
23.5
|
1.0
|
C9
|
E:EZA401
|
4.9
|
43.8
|
1.0
|
|
Reference:
C.-G.Yang,
T.Yang.
Crystal Structure of Xanthomonas Oryzae Clpp S68Y in Complex with ADEP4. To Be Published.
Page generated: Fri Aug 2 06:27:47 2024
|