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Fluorine in PDB 7dhc: The Co-Crystal Structure of DYRK2 with A Small Molecule Inhibitor 10

Enzymatic activity of The Co-Crystal Structure of DYRK2 with A Small Molecule Inhibitor 10

All present enzymatic activity of The Co-Crystal Structure of DYRK2 with A Small Molecule Inhibitor 10:
2.7.12.1;

Protein crystallography data

The structure of The Co-Crystal Structure of DYRK2 with A Small Molecule Inhibitor 10, PDB code: 7dhc was solved by T.Wei, J.Xiao, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 46.09 / 2.59
Space group C 2 2 21
Cell size a, b, c (Å), α, β, γ (°) 64.427, 128.382, 132.446, 90, 90, 90
R / Rfree (%) 16.4 / 21.8

Fluorine Binding Sites:

The binding sites of Fluorine atom in the The Co-Crystal Structure of DYRK2 with A Small Molecule Inhibitor 10 (pdb code 7dhc). This binding sites where shown within 5.0 Angstroms radius around Fluorine atom.
In total 2 binding sites of Fluorine where determined in the The Co-Crystal Structure of DYRK2 with A Small Molecule Inhibitor 10, PDB code: 7dhc:
Jump to Fluorine binding site number: 1; 2;

Fluorine binding site 1 out of 2 in 7dhc

Go back to Fluorine Binding Sites List in 7dhc
Fluorine binding site 1 out of 2 in the The Co-Crystal Structure of DYRK2 with A Small Molecule Inhibitor 10


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 1 of The Co-Crystal Structure of DYRK2 with A Small Molecule Inhibitor 10 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:F601

b:49.5
occ:1.00
F28 A:H99601 0.0 49.5 1.0
C27 A:H99601 1.4 47.4 1.0
F29 A:H99601 2.3 55.3 1.0
C11 A:H99601 2.5 36.1 1.0
N07 A:H99601 2.7 28.9 1.0
C10 A:H99601 3.0 32.1 1.0
N A:ASP368 3.4 32.8 1.0
CZ A:PHE301 3.6 30.7 1.0
CE2 A:PHE301 3.6 30.6 1.0
C12 A:H99601 3.7 42.9 1.0
CA A:ASP368 3.8 29.3 1.0
CE1 A:PHE301 3.9 34.2 1.0
CD2 A:PHE301 3.9 30.3 1.0
C04 A:H99601 4.0 31.9 1.0
CD1 A:PHE301 4.1 30.8 1.0
CG A:PHE301 4.2 25.9 1.0
CB A:ILE367 4.3 25.2 1.0
C09 A:H99601 4.4 34.6 1.0
C03 A:H99601 4.5 30.8 1.0
CG2 A:ILE285 4.5 30.5 1.0
C A:ILE367 4.5 28.1 1.0
CB A:ASP368 4.7 34.1 1.0
O A:HOH701 4.7 30.0 1.0
CA A:ILE367 4.7 21.9 1.0
OE2 A:GLU266 4.8 47.5 1.0
CG1 A:ILE285 4.8 25.8 1.0
N A:PHE369 4.9 35.3 1.0
C A:ASP368 4.9 33.4 1.0
C13 A:H99601 4.9 48.4 1.0
CD1 A:ILE367 5.0 26.1 1.0

Fluorine binding site 2 out of 2 in 7dhc

Go back to Fluorine Binding Sites List in 7dhc
Fluorine binding site 2 out of 2 in the The Co-Crystal Structure of DYRK2 with A Small Molecule Inhibitor 10


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 2 of The Co-Crystal Structure of DYRK2 with A Small Molecule Inhibitor 10 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:F601

b:55.3
occ:1.00
F29 A:H99601 0.0 55.3 1.0
C27 A:H99601 1.4 47.4 1.0
F28 A:H99601 2.3 49.5 1.0
C11 A:H99601 2.4 36.1 1.0
C12 A:H99601 3.0 42.9 1.0
CD A:LYS251 3.0 32.8 1.0
O A:HOH701 3.0 30.0 1.0
NZ A:LYS251 3.3 54.0 1.0
CZ A:PHE301 3.5 30.7 1.0
OE2 A:GLU266 3.6 47.5 1.0
C10 A:H99601 3.6 32.1 1.0
CE1 A:PHE301 3.6 34.2 1.0
CE A:LYS251 3.6 41.3 1.0
N07 A:H99601 4.0 28.9 1.0
CG A:LYS251 4.1 35.1 1.0
CE2 A:PHE301 4.3 30.6 1.0
C13 A:H99601 4.3 48.4 1.0
CB A:LYS251 4.4 40.0 1.0
CA A:ASP368 4.4 29.3 1.0
CD1 A:PHE301 4.5 30.8 1.0
OD1 A:ASP368 4.7 38.8 1.0
CD A:GLU266 4.7 48.2 1.0
C09 A:H99601 4.7 34.6 1.0
N A:ASP368 4.8 32.8 1.0
C26 A:H99601 5.0 48.2 1.0

Reference:

T.Wei, J.Xiao. The Co-Crystal Structure of DYRK2 with A Small Molecule Inhibitor 10 To Be Published.
Page generated: Fri Aug 2 06:27:51 2024

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