Fluorine in PDB 7egp: The Structure of Swi/Snf-Nucleosome Complex

The structure of The Structure of Swi/Snf-Nucleosome Complex also contains other interesting chemical elements:

Magnesium

(Mg)

1 atom

The binding sites of Fluorine atom in the The Structure of Swi/Snf-Nucleosome Complex (pdb code 7egp). This binding sites where shown within 5.0 Angstroms radius around Fluorine atom.
In total 3 binding sites of Fluorine where determined in the The Structure of Swi/Snf-Nucleosome Complex, PDB code: 7egp:
Jump to Fluorine binding site number: 1; 2; 3;

Fluorine binding site 1 out of 3 in the The Structure of Swi/Snf-Nucleosome Complex


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 1 of The Structure of Swi/Snf-Nucleosome Complex within 5.0Å range: probe atom residue distance (Å) B Occ A:F1502 b:55.0 occ:1.00 F1 A:BEF1502 0.0 55.0 1.0 BE A:BEF1502 1.7 53.2 1.0 O1B A:ADP1501 2.4 47.3 1.0 F3 A:BEF1502 2.6 51.3 1.0 F2 A:BEF1502 2.8 55.7 1.0 MG A:MG1503 3.1 21.3 1.0 NH2 A:ARG1196 3.3 1000.0 1.0 NH1 A:ARG1196 3.4 1000.0 1.0 PB A:ADP1501 3.6 47.3 1.0 CZ A:ARG1196 3.6 1000.0 1.0 O1A A:ADP1501 3.7 47.3 1.0 O3B A:ADP1501 3.8 47.3 1.0 CG A:MET794 3.8 1000.0 1.0 NH1 A:ARG1199 3.9 1000.0 1.0 SD A:MET794 4.3 1000.0 1.0 NH2 A:ARG1199 4.4 1000.0 1.0 O3A A:ADP1501 4.5 47.3 1.0 OE1 A:GLN1192 4.5 1000.0 1.0 NE A:ARG1196 4.6 1000.0 1.0 CZ A:ARG1199 4.6 1000.0 1.0 OE2 A:GLU895 4.6 1000.0 1.0 O2B A:ADP1501 4.7 47.3 1.0 PA A:ADP1501 4.7 47.3 1.0 CD A:LYS798 4.8 1000.0 1.0

Fluorine binding site 2 out of 3 in the The Structure of Swi/Snf-Nucleosome Complex


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 2 of The Structure of Swi/Snf-Nucleosome Complex within 5.0Å range: probe atom residue distance (Å) B Occ A:F1502 b:55.7 occ:1.00 F2 A:BEF1502 0.0 55.7 1.0 BE A:BEF1502 1.7 53.2 1.0 NH2 A:ARG1199 1.8 1000.0 1.0 NH2 A:ARG1196 2.0 1000.0 1.0 CZ A:ARG1199 2.6 1000.0 1.0 CZ A:ARG1196 2.7 1000.0 1.0 F3 A:BEF1502 2.7 51.3 1.0 NH1 A:ARG1199 2.8 1000.0 1.0 F1 A:BEF1502 2.8 55.0 1.0 NE A:ARG1196 3.1 1000.0 1.0 CD A:ARG1196 3.1 1000.0 1.0 O A:LEU1170 3.4 1000.0 1.0 NH1 A:ARG1196 3.6 1000.0 1.0 NE A:ARG1199 3.9 1000.0 1.0 O1B A:ADP1501 4.1 47.3 1.0 CG A:MET794 4.3 1000.0 1.0 SD A:MET794 4.4 1000.0 1.0 CG A:ARG1196 4.4 1000.0 1.0 O1A A:ADP1501 4.4 47.3 1.0 CA A:ASN1171 4.6 1000.0 1.0 C A:LEU1170 4.6 1000.0 1.0 CA A:ARG1196 4.6 1000.0 1.0 O A:ASP1195 4.6 1000.0 1.0 OD1 A:ASN1171 4.7 1000.0 1.0 CG A:ASN1171 4.7 1000.0 1.0 CB A:ARG1196 4.9 1000.0 1.0 CB A:ASN1171 5.0 1000.0 1.0

Fluorine binding site 3 out of 3 in the The Structure of Swi/Snf-Nucleosome Complex


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 3 of The Structure of Swi/Snf-Nucleosome Complex within 5.0Å range: probe atom residue distance (Å) B Occ A:F1502 b:51.3 occ:1.00 F3 A:BEF1502 0.0 51.3 1.0 BE A:BEF1502 1.7 53.2 1.0 NH1 A:ARG1199 1.9 1000.0 1.0 O1B A:ADP1501 2.2 47.3 1.0 O1A A:ADP1501 2.2 47.3 1.0 F1 A:BEF1502 2.6 55.0 1.0 F2 A:BEF1502 2.7 55.7 1.0 CZ A:ARG1199 2.8 1000.0 1.0 O3A A:ADP1501 3.1 47.3 1.0 PA A:ADP1501 3.1 47.3 1.0 PB A:ADP1501 3.2 47.3 1.0 NH2 A:ARG1199 3.2 1000.0 1.0 ND2 A:ASN1171 3.5 1000.0 1.0 NE A:ARG1199 3.7 1000.0 1.0 CG A:ASN1171 3.8 1000.0 1.0 O5' A:ADP1501 3.8 47.3 1.0 OD1 A:ASN1171 3.8 1000.0 1.0 O3B A:ADP1501 3.9 47.3 1.0 N A:GLY795 4.0 1000.0 1.0 NH2 A:ARG1196 4.1 1000.0 1.0 CG A:MET794 4.2 1000.0 1.0 CD A:ARG1199 4.2 1000.0 1.0 CA A:GLY795 4.3 1000.0 1.0 O2B A:ADP1501 4.4 47.3 1.0 O2A A:ADP1501 4.5 47.3 1.0 CB A:ASN1171 4.7 1000.0 1.0 MG A:MG1503 4.8 21.3 1.0 C5' A:ADP1501 4.8 47.3 1.0 CZ A:ARG1196 4.9 1000.0 1.0

Z.Y.He, K.J.Chen, Y.P.Ye, Z.C.Chen. Structure of the Swi/Snf Complex Bound to the Nucleosome and Insights Into the Functional Modularity. Cell Discov V. 7 28 2021.
ISSN: ESSN 2056-5968
PubMed: 33907182
DOI: 10.1038/S41421-021-00262-5