Fluorine in PDB 7eo4: Cryo-Em of Sphingosine 1-Phosphate Receptor 1 / Gi Complex Bound to BAF312
Fluorine Binding Sites:
The binding sites of Fluorine atom in the Cryo-Em of Sphingosine 1-Phosphate Receptor 1 / Gi Complex Bound to BAF312
(pdb code 7eo4). This binding sites where shown within
5.0 Angstroms radius around Fluorine atom.
In total 3 binding sites of Fluorine where determined in the
Cryo-Em of Sphingosine 1-Phosphate Receptor 1 / Gi Complex Bound to BAF312, PDB code: 7eo4:
Jump to Fluorine binding site number:
1;
2;
3;
Fluorine binding site 1 out
of 3 in 7eo4
Go back to
Fluorine Binding Sites List in 7eo4
Fluorine binding site 1 out
of 3 in the Cryo-Em of Sphingosine 1-Phosphate Receptor 1 / Gi Complex Bound to BAF312
Mono view
Stereo pair view
|
A full contact list of Fluorine with other atoms in the F binding
site number 1 of Cryo-Em of Sphingosine 1-Phosphate Receptor 1 / Gi Complex Bound to BAF312 within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:F401
b:33.3
occ:1.00
|
F26
|
A:J8C401
|
0.0
|
33.3
|
1.0
|
C25
|
A:J8C401
|
1.4
|
33.3
|
1.0
|
F27
|
A:J8C401
|
2.1
|
33.3
|
1.0
|
F28
|
A:J8C401
|
2.1
|
33.3
|
1.0
|
C15
|
A:J8C401
|
2.6
|
33.3
|
1.0
|
O
|
A:CYS206
|
2.7
|
30.3
|
1.0
|
C19
|
A:J8C401
|
2.9
|
33.3
|
1.0
|
C
|
A:CYS206
|
2.9
|
30.3
|
1.0
|
CB
|
A:CYS206
|
3.0
|
30.3
|
1.0
|
C16
|
A:J8C401
|
3.1
|
33.3
|
1.0
|
CA
|
A:CYS206
|
3.5
|
30.3
|
1.0
|
N
|
A:THR207
|
3.5
|
24.8
|
1.0
|
C14
|
A:J8C401
|
3.8
|
33.3
|
1.0
|
C24
|
A:J8C401
|
3.8
|
33.3
|
1.0
|
CB
|
A:PHE210
|
3.9
|
27.2
|
1.0
|
CA
|
A:THR207
|
3.9
|
24.8
|
1.0
|
C20
|
A:J8C401
|
4.0
|
33.3
|
1.0
|
C17
|
A:J8C401
|
4.4
|
33.3
|
1.0
|
SG
|
A:CYS206
|
4.6
|
30.3
|
1.0
|
CG
|
A:PHE210
|
4.7
|
27.2
|
1.0
|
OG1
|
A:THR207
|
4.8
|
24.8
|
1.0
|
N
|
A:CYS206
|
4.8
|
30.3
|
1.0
|
N
|
A:PHE210
|
4.9
|
27.2
|
1.0
|
C
|
A:THR207
|
4.9
|
24.8
|
1.0
|
|
Fluorine binding site 2 out
of 3 in 7eo4
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Fluorine Binding Sites List in 7eo4
Fluorine binding site 2 out
of 3 in the Cryo-Em of Sphingosine 1-Phosphate Receptor 1 / Gi Complex Bound to BAF312
Mono view
Stereo pair view
|
A full contact list of Fluorine with other atoms in the F binding
site number 2 of Cryo-Em of Sphingosine 1-Phosphate Receptor 1 / Gi Complex Bound to BAF312 within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:F401
b:33.3
occ:1.00
|
F27
|
A:J8C401
|
0.0
|
33.3
|
1.0
|
C25
|
A:J8C401
|
1.4
|
33.3
|
1.0
|
F26
|
A:J8C401
|
2.1
|
33.3
|
1.0
|
F28
|
A:J8C401
|
2.1
|
33.3
|
1.0
|
C15
|
A:J8C401
|
2.5
|
33.3
|
1.0
|
C14
|
A:J8C401
|
2.9
|
33.3
|
1.0
|
CD1
|
A:LEU276
|
3.3
|
28.3
|
1.0
|
CB
|
A:CYS206
|
3.4
|
30.3
|
1.0
|
C16
|
A:J8C401
|
3.7
|
33.3
|
1.0
|
C13
|
A:J8C401
|
4.3
|
33.3
|
1.0
|
C
|
A:CYS206
|
4.3
|
30.3
|
1.0
|
C19
|
A:J8C401
|
4.3
|
33.3
|
1.0
|
CA
|
A:CYS206
|
4.5
|
30.3
|
1.0
|
N
|
A:THR207
|
4.5
|
24.8
|
1.0
|
SG
|
A:CYS206
|
4.5
|
30.3
|
1.0
|
O
|
A:CYS206
|
4.6
|
30.3
|
1.0
|
CG
|
A:LEU276
|
4.7
|
28.3
|
1.0
|
C17
|
A:J8C401
|
4.8
|
33.3
|
1.0
|
O11
|
A:J8C401
|
4.9
|
33.3
|
1.0
|
O
|
A:ILE203
|
4.9
|
28.1
|
1.0
|
CB
|
A:LEU276
|
5.0
|
28.3
|
1.0
|
OG1
|
A:THR207
|
5.0
|
24.8
|
1.0
|
|
Fluorine binding site 3 out
of 3 in 7eo4
Go back to
Fluorine Binding Sites List in 7eo4
Fluorine binding site 3 out
of 3 in the Cryo-Em of Sphingosine 1-Phosphate Receptor 1 / Gi Complex Bound to BAF312
Mono view
Stereo pair view
|
A full contact list of Fluorine with other atoms in the F binding
site number 3 of Cryo-Em of Sphingosine 1-Phosphate Receptor 1 / Gi Complex Bound to BAF312 within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:F401
b:33.3
occ:1.00
|
F28
|
A:J8C401
|
0.0
|
33.3
|
1.0
|
C25
|
A:J8C401
|
1.4
|
33.3
|
1.0
|
F27
|
A:J8C401
|
2.1
|
33.3
|
1.0
|
F26
|
A:J8C401
|
2.1
|
33.3
|
1.0
|
C15
|
A:J8C401
|
2.5
|
33.3
|
1.0
|
C14
|
A:J8C401
|
3.1
|
33.3
|
1.0
|
C16
|
A:J8C401
|
3.5
|
33.3
|
1.0
|
CD1
|
A:LEU276
|
4.0
|
28.3
|
1.0
|
C19
|
A:J8C401
|
4.0
|
33.3
|
1.0
|
CD2
|
A:LEU272
|
4.2
|
26.8
|
1.0
|
C24
|
A:J8C401
|
4.4
|
33.3
|
1.0
|
C13
|
A:J8C401
|
4.4
|
33.3
|
1.0
|
CZ3
|
A:TRP269
|
4.5
|
26.1
|
1.0
|
CB
|
A:PHE210
|
4.5
|
27.2
|
1.0
|
CG
|
A:PHE210
|
4.6
|
27.2
|
1.0
|
C17
|
A:J8C401
|
4.7
|
33.3
|
1.0
|
O
|
A:CYS206
|
4.7
|
30.3
|
1.0
|
CB
|
A:CYS206
|
4.9
|
30.3
|
1.0
|
CD1
|
A:PHE210
|
4.9
|
27.2
|
1.0
|
CD1
|
A:PHE273
|
4.9
|
28.1
|
1.0
|
C
|
A:CYS206
|
4.9
|
30.3
|
1.0
|
CD2
|
A:PHE210
|
5.0
|
27.2
|
1.0
|
|
Reference:
Z.Xu,
T.Ikuta,
K.Kawakami,
R.Kise,
Y.Qian,
R.Xia,
M.X.Sun,
A.Zhang,
C.Guo,
X.H.Cai,
Z.Huang,
A.Inoue,
Y.He.
Structural Basis of Sphingosine-1-Phosphate Receptor 1 Activation and Biased Agonism. Nat.Chem.Biol. 2021.
ISSN: ESSN 1552-4469
PubMed: 34937912
DOI: 10.1038/S41589-021-00930-3
Page generated: Thu Mar 31 02:59:12 2022
|