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Fluorine in PDB 7eob: Crystal Structure of KIF1A Motor-Neck Domain E239K Mutant with Adp-Mg- Alfx

Protein crystallography data

The structure of Crystal Structure of KIF1A Motor-Neck Domain E239K Mutant with Adp-Mg- Alfx, PDB code: 7eob was solved by T.Ogawa, X.Jiang, N.Hirokawa, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 30.00 / 1.76
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 41.655, 57.249, 155.041, 90, 90, 90
R / Rfree (%) 21.5 / 24

Other elements in 7eob:

The structure of Crystal Structure of KIF1A Motor-Neck Domain E239K Mutant with Adp-Mg- Alfx also contains other interesting chemical elements:

Aluminium (Al) 1 atom
Magnesium (Mg) 1 atom

Fluorine Binding Sites:

The binding sites of Fluorine atom in the Crystal Structure of KIF1A Motor-Neck Domain E239K Mutant with Adp-Mg- Alfx (pdb code 7eob). This binding sites where shown within 5.0 Angstroms radius around Fluorine atom.
In total 3 binding sites of Fluorine where determined in the Crystal Structure of KIF1A Motor-Neck Domain E239K Mutant with Adp-Mg- Alfx, PDB code: 7eob:
Jump to Fluorine binding site number: 1; 2; 3;

Fluorine binding site 1 out of 3 in 7eob

Go back to Fluorine Binding Sites List in 7eob
Fluorine binding site 1 out of 3 in the Crystal Structure of KIF1A Motor-Neck Domain E239K Mutant with Adp-Mg- Alfx


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 1 of Crystal Structure of KIF1A Motor-Neck Domain E239K Mutant with Adp-Mg- Alfx within 5.0Å range:
probe atom residue distance (Å) B Occ
A:F400

b:30.6
occ:1.00
F1 A:AF3400 0.0 30.6 1.0
MG A:MG401 1.9 30.0 1.0
AL A:AF3400 1.9 52.2 1.0
O3B A:ADP500 2.7 20.1 1.0
OG A:SER104 2.7 22.8 1.0
F2 A:AF3400 2.9 29.9 1.0
O1A A:ADP500 3.0 26.1 1.0
CB A:SER104 3.1 23.9 1.0
O A:HOH706 3.6 58.3 1.0
PB A:ADP500 3.6 23.1 1.0
F3 A:AF3400 3.6 29.8 1.0
O1B A:ADP500 3.8 22.9 1.0
O A:HOH698 3.8 35.7 1.0
PA A:ADP500 3.8 24.9 1.0
O A:HOH645 3.9 39.8 1.0
O3A A:ADP500 4.1 22.6 1.0
O2A A:ADP500 4.1 26.6 1.0
O A:HOH619 4.1 33.4 1.0
CA A:SER104 4.4 23.3 1.0
N A:SER104 4.6 24.3 1.0

Fluorine binding site 2 out of 3 in 7eob

Go back to Fluorine Binding Sites List in 7eob
Fluorine binding site 2 out of 3 in the Crystal Structure of KIF1A Motor-Neck Domain E239K Mutant with Adp-Mg- Alfx


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 2 of Crystal Structure of KIF1A Motor-Neck Domain E239K Mutant with Adp-Mg- Alfx within 5.0Å range:
probe atom residue distance (Å) B Occ
A:F400

b:29.9
occ:1.00
F2 A:AF3400 0.0 29.9 1.0
AL A:AF3400 1.8 52.2 1.0
MG A:MG401 2.4 30.0 1.0
O A:HOH645 2.6 39.8 1.0
O1B A:ADP500 2.6 22.9 1.0
F3 A:AF3400 2.9 29.8 1.0
F1 A:AF3400 2.9 30.6 1.0
O A:HOH647 3.1 29.7 1.0
O3B A:ADP500 3.2 20.1 1.0
PB A:ADP500 3.4 23.1 1.0
O A:HOH670 3.5 32.4 1.0
O A:HOH616 3.7 34.7 1.0
O A:HOH619 3.7 33.4 1.0
OG A:SER104 4.3 22.8 1.0
O2B A:ADP500 4.5 22.0 1.0
CA A:SER215 4.6 37.3 1.0
NZ A:LYS103 4.6 25.3 1.0
CG2 A:THR99 4.6 29.6 1.0
O3A A:ADP500 4.6 22.6 1.0
O1A A:ADP500 4.8 26.1 1.0
CB A:SER215 4.9 39.1 1.0
N A:GLY100 4.9 24.7 1.0
CE A:LYS103 4.9 25.1 1.0
O A:THR213 5.0 30.5 1.0

Fluorine binding site 3 out of 3 in 7eob

Go back to Fluorine Binding Sites List in 7eob
Fluorine binding site 3 out of 3 in the Crystal Structure of KIF1A Motor-Neck Domain E239K Mutant with Adp-Mg- Alfx


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 3 of Crystal Structure of KIF1A Motor-Neck Domain E239K Mutant with Adp-Mg- Alfx within 5.0Å range:
probe atom residue distance (Å) B Occ
A:F400

b:29.8
occ:1.00
F3 A:AF3400 0.0 29.8 1.0
MG A:MG401 1.8 30.0 1.0
AL A:AF3400 1.9 52.2 1.0
O A:HOH670 2.6 32.4 1.0
OG A:SER104 2.7 22.8 1.0
F2 A:AF3400 2.9 29.9 1.0
O3B A:ADP500 2.9 20.1 1.0
OD1 A:ASP248 3.0 26.6 1.0
OD2 A:ASP248 3.4 25.1 1.0
O A:HOH616 3.5 34.7 1.0
CG A:ASP248 3.5 25.1 1.0
CE A:LYS103 3.6 25.1 1.0
F1 A:AF3400 3.6 30.6 1.0
O A:LEU249 3.9 25.0 1.0
PB A:ADP500 3.9 23.1 1.0
O A:HOH647 3.9 29.7 1.0
CB A:SER104 4.0 23.9 1.0
CB A:LYS103 4.1 23.1 1.0
N A:SER104 4.1 24.3 1.0
O1B A:ADP500 4.1 22.9 1.0
NZ A:LYS103 4.2 25.3 1.0
O2B A:ADP500 4.5 22.0 1.0
NH2 A:ARG203 4.5 64.0 1.0
CA A:SER104 4.5 23.3 1.0
CD A:LYS103 4.6 23.7 1.0
C A:LYS103 4.9 24.2 1.0
NH1 A:ARG203 4.9 55.1 1.0
CG A:LYS103 4.9 22.5 1.0
CB A:ASP248 5.0 24.3 1.0

Reference:

M.Morikawa, T.Ogawa, N.Hirokawa. Crystal Structure of KIF1A Motor-Neck Domain with Adp-Mg-Alfx To Be Published.
Page generated: Thu Mar 31 02:59:11 2022

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