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Fluorine in PDB 7ew7: Cryo-Em Structure of SEW2871-Bound Sphingosine-1-Phosphate Receptor 1 in Complex with Gi Protein

Fluorine Binding Sites:

The binding sites of Fluorine atom in the Cryo-Em Structure of SEW2871-Bound Sphingosine-1-Phosphate Receptor 1 in Complex with Gi Protein (pdb code 7ew7). This binding sites where shown within 5.0 Angstroms radius around Fluorine atom.
In total 6 binding sites of Fluorine where determined in the Cryo-Em Structure of SEW2871-Bound Sphingosine-1-Phosphate Receptor 1 in Complex with Gi Protein, PDB code: 7ew7:
Jump to Fluorine binding site number: 1; 2; 3; 4; 5; 6;

Fluorine binding site 1 out of 6 in 7ew7

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Fluorine binding site 1 out of 6 in the Cryo-Em Structure of SEW2871-Bound Sphingosine-1-Phosphate Receptor 1 in Complex with Gi Protein


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 1 of Cryo-Em Structure of SEW2871-Bound Sphingosine-1-Phosphate Receptor 1 in Complex with Gi Protein within 5.0Å range:
probe atom residue distance (Å) B Occ
D:F401

b:140.3
occ:1.00
F01 D:JEX401 0.0 140.3 1.0
C02 D:JEX401 1.4 140.3 1.0
F30 D:JEX401 2.2 140.3 1.0
F29 D:JEX401 2.2 140.3 1.0
C03 D:JEX401 2.4 140.3 1.0
CD2 D:LEU276 2.8 147.4 1.0
S04 D:JEX401 3.1 140.3 1.0
C07 D:JEX401 3.7 140.3 1.0
CG D:LEU276 4.1 147.4 1.0
C13 D:JEX401 4.2 140.3 1.0
C08 D:JEX401 4.2 140.3 1.0
CG D:LEU272 4.5 138.2 1.0
CD1 D:LEU276 4.5 147.4 1.0
O D:LEU272 4.5 138.2 1.0
CB D:LEU276 4.5 147.4 1.0
C05 D:JEX401 4.6 140.3 1.0
CA D:PHE273 4.6 137.8 1.0
C D:LEU272 4.6 138.2 1.0
CD2 D:LEU272 4.6 138.2 1.0
C06 D:JEX401 4.7 140.3 1.0
N D:PHE273 4.7 137.8 1.0
CB D:LEU272 4.8 138.2 1.0
CD2 D:PHE210 4.9 120.6 1.0
CG D:PHE210 4.9 120.6 1.0
CE3 D:TRP269 4.9 118.3 1.0

Fluorine binding site 2 out of 6 in 7ew7

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Fluorine binding site 2 out of 6 in the Cryo-Em Structure of SEW2871-Bound Sphingosine-1-Phosphate Receptor 1 in Complex with Gi Protein


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 2 of Cryo-Em Structure of SEW2871-Bound Sphingosine-1-Phosphate Receptor 1 in Complex with Gi Protein within 5.0Å range:
probe atom residue distance (Å) B Occ
D:F401

b:140.3
occ:1.00
F26 D:JEX401 0.0 140.3 1.0
C25 D:JEX401 1.4 140.3 1.0
F27 D:JEX401 2.2 140.3 1.0
F28 D:JEX401 2.2 140.3 1.0
C23 D:JEX401 2.4 140.3 1.0
OE2 D:GLU121 2.7 151.9 1.0
C22 D:JEX401 3.0 140.3 1.0
CD D:GLU121 3.5 151.9 1.0
OE1 D:GLU121 3.5 151.9 1.0
CD2 D:LEU195 3.5 163.4 1.0
C24 D:JEX401 3.5 140.3 1.0
C21 D:JEX401 4.3 140.3 1.0
ND2 D:ASN101 4.4 146.6 1.0
CD1 D:LEU195 4.5 163.4 1.0
CG D:LEU195 4.6 163.4 1.0
C19 D:JEX401 4.7 140.3 1.0
CG D:GLU121 4.9 151.9 1.0

Fluorine binding site 3 out of 6 in 7ew7

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Fluorine binding site 3 out of 6 in the Cryo-Em Structure of SEW2871-Bound Sphingosine-1-Phosphate Receptor 1 in Complex with Gi Protein


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 3 of Cryo-Em Structure of SEW2871-Bound Sphingosine-1-Phosphate Receptor 1 in Complex with Gi Protein within 5.0Å range:
probe atom residue distance (Å) B Occ
D:F401

b:140.3
occ:1.00
F27 D:JEX401 0.0 140.3 1.0
C25 D:JEX401 1.4 140.3 1.0
F26 D:JEX401 2.2 140.3 1.0
F28 D:JEX401 2.2 140.3 1.0
C23 D:JEX401 2.4 140.3 1.0
ND2 D:ASN101 2.7 146.6 1.0
C24 D:JEX401 2.8 140.3 1.0
OE2 D:GLU121 3.0 151.9 1.0
OE1 D:GLU121 3.2 151.9 1.0
CD D:GLU121 3.4 151.9 1.0
C22 D:JEX401 3.7 140.3 1.0
CG D:ASN101 3.7 146.6 1.0
OD1 D:ASN101 3.9 146.6 1.0
C19 D:JEX401 4.1 140.3 1.0
CG D:MET124 4.5 134.7 1.0
CG D:GLU121 4.7 151.9 1.0
C21 D:JEX401 4.8 140.3 1.0
N16 D:JEX401 4.9 140.3 1.0
CD2 D:LEU297 5.0 141.2 1.0
C17 D:JEX401 5.0 140.3 1.0
C20 D:JEX401 5.0 140.3 1.0

Fluorine binding site 4 out of 6 in 7ew7

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Fluorine binding site 4 out of 6 in the Cryo-Em Structure of SEW2871-Bound Sphingosine-1-Phosphate Receptor 1 in Complex with Gi Protein


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 4 of Cryo-Em Structure of SEW2871-Bound Sphingosine-1-Phosphate Receptor 1 in Complex with Gi Protein within 5.0Å range:
probe atom residue distance (Å) B Occ
D:F401

b:140.3
occ:1.00
F28 D:JEX401 0.0 140.3 1.0
C25 D:JEX401 1.4 140.3 1.0
F26 D:JEX401 2.2 140.3 1.0
F27 D:JEX401 2.2 140.3 1.0
C23 D:JEX401 2.4 140.3 1.0
C22 D:JEX401 3.1 140.3 1.0
ND2 D:ASN101 3.3 146.6 1.0
C24 D:JEX401 3.5 140.3 1.0
CD2 D:LEU297 4.0 141.2 1.0
C21 D:JEX401 4.4 140.3 1.0
CG D:ASN101 4.4 146.6 1.0
OE2 D:GLU121 4.4 151.9 1.0
OD1 D:ASN101 4.6 146.6 1.0
C19 D:JEX401 4.6 140.3 1.0

Fluorine binding site 5 out of 6 in 7ew7

Go back to Fluorine Binding Sites List in 7ew7
Fluorine binding site 5 out of 6 in the Cryo-Em Structure of SEW2871-Bound Sphingosine-1-Phosphate Receptor 1 in Complex with Gi Protein


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 5 of Cryo-Em Structure of SEW2871-Bound Sphingosine-1-Phosphate Receptor 1 in Complex with Gi Protein within 5.0Å range:
probe atom residue distance (Å) B Occ
D:F401

b:140.3
occ:1.00
F29 D:JEX401 0.0 140.3 1.0
C02 D:JEX401 1.3 140.3 1.0
F30 D:JEX401 2.2 140.3 1.0
F01 D:JEX401 2.2 140.3 1.0
C03 D:JEX401 2.3 140.3 1.0
C08 D:JEX401 2.7 140.3 1.0
C13 D:JEX401 2.7 140.3 1.0
C07 D:JEX401 2.8 140.3 1.0
C09 D:JEX401 3.4 140.3 1.0
C12 D:JEX401 3.5 140.3 1.0
CD1 D:PHE210 3.5 120.6 1.0
CZ3 D:TRP269 3.6 118.3 1.0
CG D:PHE210 3.7 120.6 1.0
S04 D:JEX401 3.8 140.3 1.0
CE3 D:TRP269 3.8 118.3 1.0
CE1 D:PHE210 3.9 120.6 1.0
C10 D:JEX401 4.1 140.3 1.0
C11 D:JEX401 4.1 140.3 1.0
CB D:PHE210 4.1 120.6 1.0
C06 D:JEX401 4.1 140.3 1.0
CD2 D:PHE210 4.2 120.6 1.0
CZ D:PHE210 4.4 120.6 1.0
CE2 D:PHE210 4.5 120.6 1.0
C05 D:JEX401 4.7 140.3 1.0
CD2 D:LEU276 4.8 147.4 1.0
CH2 D:TRP269 4.8 118.3 1.0

Fluorine binding site 6 out of 6 in 7ew7

Go back to Fluorine Binding Sites List in 7ew7
Fluorine binding site 6 out of 6 in the Cryo-Em Structure of SEW2871-Bound Sphingosine-1-Phosphate Receptor 1 in Complex with Gi Protein


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 6 of Cryo-Em Structure of SEW2871-Bound Sphingosine-1-Phosphate Receptor 1 in Complex with Gi Protein within 5.0Å range:
probe atom residue distance (Å) B Occ
D:F401

b:140.3
occ:1.00
F30 D:JEX401 0.0 140.3 1.0
C02 D:JEX401 1.4 140.3 1.0
F01 D:JEX401 2.2 140.3 1.0
F29 D:JEX401 2.2 140.3 1.0
C03 D:JEX401 2.3 140.3 1.0
C13 D:JEX401 2.7 140.3 1.0
C07 D:JEX401 3.1 140.3 1.0
C08 D:JEX401 3.3 140.3 1.0
CD2 D:LEU276 3.3 147.4 1.0
S04 D:JEX401 3.6 140.3 1.0
C12 D:JEX401 3.7 140.3 1.0
CB D:PHE210 4.2 120.6 1.0
O D:CYS206 4.3 139.7 1.0
C06 D:JEX401 4.3 140.3 1.0
CB D:CYS206 4.4 139.7 1.0
C D:CYS206 4.4 139.7 1.0
CG D:PHE210 4.5 120.6 1.0
CG2 D:THR207 4.5 138.4 1.0
C09 D:JEX401 4.5 140.3 1.0
CA D:THR207 4.5 138.4 1.0
N D:THR207 4.5 138.4 1.0
C05 D:JEX401 4.7 140.3 1.0
CG D:LEU276 4.8 147.4 1.0
C11 D:JEX401 4.8 140.3 1.0
CD1 D:PHE210 4.9 120.6 1.0
CD2 D:PHE210 5.0 120.6 1.0

Reference:

Y.Yuan, G.Jia, C.Wu, W.Wang, L.Cheng, Q.Li, Z.Li, K.Luo, S.Yang, W.Yan, Z.Su, Z.Shao. Structures of Signaling Complexes of Lipid Receptors S1PR1 and S1PR5 Reveal Mechanisms of Activation and Drug Recognition. Cell Res. 2021.
ISSN: ISSN 1001-0602
PubMed: 34526663
DOI: 10.1038/S41422-021-00566-X
Page generated: Tue Jul 15 19:21:59 2025

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