Fluorine in PDB 7fek: The 1.05 Angstrom X-Ray Structure of the Human Heart Fatty Acid- Binding Protein Complexed with Perfluorooctanoic Acid
Protein crystallography data
The structure of The 1.05 Angstrom X-Ray Structure of the Human Heart Fatty Acid- Binding Protein Complexed with Perfluorooctanoic Acid, PDB code: 7fek
was solved by
S.Sugiyama,
K.Kakinouchi,
T.Hara,
R.Nakano,
S.Matsuoka,
H.Tsuchikawa,
M.Sonoyama,
Y.Inoue,
F.Hayashi,
M.Murata,
with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:
Resolution Low / High (Å)
|
15.71 /
1.05
|
Space group
|
P 21 21 21
|
Cell size a, b, c (Å), α, β, γ (°)
|
54.689,
68.819,
33.752,
90,
90,
90
|
R / Rfree (%)
|
11.7 /
13.8
|
Fluorine Binding Sites:
Pages:
>>> Page 1 <<<
Page 2, Binding sites: 11 -
20;
Page 3, Binding sites: 21 -
30;
Binding sites:
The binding sites of Fluorine atom in the The 1.05 Angstrom X-Ray Structure of the Human Heart Fatty Acid- Binding Protein Complexed with Perfluorooctanoic Acid
(pdb code 7fek). This binding sites where shown within
5.0 Angstroms radius around Fluorine atom.
In total 30 binding sites of Fluorine where determined in the
The 1.05 Angstrom X-Ray Structure of the Human Heart Fatty Acid- Binding Protein Complexed with Perfluorooctanoic Acid, PDB code: 7fek:
Jump to Fluorine binding site number:
1;
2;
3;
4;
5;
6;
7;
8;
9;
10;
Fluorine binding site 1 out
of 30 in 7fek
Go back to
Fluorine Binding Sites List in 7fek
Fluorine binding site 1 out
of 30 in the The 1.05 Angstrom X-Ray Structure of the Human Heart Fatty Acid- Binding Protein Complexed with Perfluorooctanoic Acid
Mono view
Stereo pair view
|
A full contact list of Fluorine with other atoms in the F binding
site number 1 of The 1.05 Angstrom X-Ray Structure of the Human Heart Fatty Acid- Binding Protein Complexed with Perfluorooctanoic Acid within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:F201
b:14.2
occ:0.66
|
F01
|
A:8PF201
|
0.0
|
14.2
|
0.7
|
C02
|
A:8PF201
|
1.4
|
10.7
|
0.7
|
F03
|
A:8PF201
|
2.2
|
15.4
|
0.7
|
C04
|
A:8PF201
|
2.3
|
11.3
|
0.7
|
C10
|
A:8PF201
|
2.4
|
12.2
|
0.7
|
F06
|
A:8PF201
|
2.5
|
17.0
|
0.7
|
F15
|
A:8PF201
|
2.6
|
17.2
|
0.7
|
C13
|
A:8PF201
|
2.8
|
12.8
|
0.7
|
F25
|
A:8PF202
|
2.8
|
97.6
|
0.7
|
F14
|
A:8PF201
|
2.8
|
18.0
|
0.7
|
F11
|
A:8PF201
|
2.9
|
18.6
|
0.7
|
O09
|
A:8PF201
|
2.9
|
8.4
|
0.7
|
C07
|
A:8PF201
|
3.0
|
8.4
|
0.7
|
O
|
A:HOH368
|
3.0
|
13.5
|
1.0
|
O
|
A:HOH396
|
3.1
|
11.2
|
1.0
|
F05
|
A:8PF201
|
3.4
|
15.0
|
0.7
|
F12
|
A:8PF201
|
3.5
|
15.8
|
0.7
|
F21
|
A:8PF202
|
3.5
|
53.0
|
0.7
|
C22
|
A:8PF202
|
4.0
|
93.4
|
0.7
|
O08
|
A:8PF201
|
4.1
|
8.3
|
0.7
|
C19
|
A:8PF202
|
4.1
|
138.8
|
0.7
|
CG2
|
A:THR54
|
4.3
|
12.6
|
1.0
|
C16
|
A:8PF201
|
4.3
|
13.9
|
0.7
|
F20
|
A:8PF202
|
4.4
|
81.8
|
0.7
|
F23
|
A:8PF202
|
4.6
|
90.8
|
0.7
|
O
|
A:HOH460
|
4.7
|
9.7
|
0.4
|
F24
|
A:8PF202
|
4.9
|
102.5
|
0.7
|
F17
|
A:8PF201
|
4.9
|
18.7
|
0.7
|
F18
|
A:8PF201
|
4.9
|
17.4
|
0.7
|
O
|
A:HOH413
|
4.9
|
9.6
|
1.0
|
F21
|
A:8PF201
|
5.0
|
26.3
|
0.7
|
OG1
|
A:THR54
|
5.0
|
10.9
|
1.0
|
|
Fluorine binding site 2 out
of 30 in 7fek
Go back to
Fluorine Binding Sites List in 7fek
Fluorine binding site 2 out
of 30 in the The 1.05 Angstrom X-Ray Structure of the Human Heart Fatty Acid- Binding Protein Complexed with Perfluorooctanoic Acid
Mono view
Stereo pair view
|
A full contact list of Fluorine with other atoms in the F binding
site number 2 of The 1.05 Angstrom X-Ray Structure of the Human Heart Fatty Acid- Binding Protein Complexed with Perfluorooctanoic Acid within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:F201
b:15.4
occ:0.66
|
F03
|
A:8PF201
|
0.0
|
15.4
|
0.7
|
C02
|
A:8PF201
|
1.3
|
10.7
|
0.7
|
F01
|
A:8PF201
|
2.2
|
14.2
|
0.7
|
C04
|
A:8PF201
|
2.2
|
11.3
|
0.7
|
C10
|
A:8PF201
|
2.3
|
12.2
|
0.7
|
F12
|
A:8PF201
|
2.6
|
15.8
|
0.7
|
O09
|
A:8PF201
|
2.7
|
8.4
|
0.7
|
F05
|
A:8PF201
|
2.8
|
15.0
|
0.7
|
F14
|
A:8PF201
|
2.8
|
18.0
|
0.7
|
C07
|
A:8PF201
|
2.8
|
8.4
|
0.7
|
C13
|
A:8PF201
|
3.1
|
12.8
|
0.7
|
O
|
A:HOH368
|
3.2
|
13.5
|
1.0
|
F06
|
A:8PF201
|
3.5
|
17.0
|
0.7
|
F11
|
A:8PF201
|
3.5
|
18.6
|
0.7
|
F15
|
A:8PF201
|
3.8
|
17.2
|
0.7
|
O08
|
A:8PF201
|
3.9
|
8.3
|
0.7
|
O
|
A:HOH460
|
4.0
|
9.7
|
0.4
|
CD2
|
A:LEU105
|
4.0
|
11.4
|
1.0
|
O
|
A:HOH460
|
4.3
|
8.9
|
0.2
|
CD2
|
A:LEU116
|
4.4
|
9.6
|
1.0
|
O
|
A:HOH396
|
4.4
|
11.2
|
1.0
|
C16
|
A:8PF201
|
4.4
|
13.9
|
0.7
|
F18
|
A:8PF201
|
4.4
|
17.4
|
0.7
|
CD2
|
A:LEU118
|
4.5
|
12.3
|
1.0
|
CD1
|
A:LEU118
|
4.6
|
10.1
|
1.0
|
O
|
A:HOH418
|
4.9
|
13.4
|
1.0
|
O
|
A:HOH329
|
5.0
|
11.8
|
1.0
|
|
Fluorine binding site 3 out
of 30 in 7fek
Go back to
Fluorine Binding Sites List in 7fek
Fluorine binding site 3 out
of 30 in the The 1.05 Angstrom X-Ray Structure of the Human Heart Fatty Acid- Binding Protein Complexed with Perfluorooctanoic Acid
Mono view
Stereo pair view
|
A full contact list of Fluorine with other atoms in the F binding
site number 3 of The 1.05 Angstrom X-Ray Structure of the Human Heart Fatty Acid- Binding Protein Complexed with Perfluorooctanoic Acid within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:F201
b:15.0
occ:0.66
|
F05
|
A:8PF201
|
0.0
|
15.0
|
0.7
|
C04
|
A:8PF201
|
1.3
|
11.3
|
0.7
|
F06
|
A:8PF201
|
2.1
|
17.0
|
0.7
|
C02
|
A:8PF201
|
2.2
|
10.7
|
0.7
|
C07
|
A:8PF201
|
2.3
|
8.4
|
0.7
|
O08
|
A:8PF201
|
2.6
|
8.3
|
0.7
|
F12
|
A:8PF201
|
2.7
|
15.8
|
0.7
|
F03
|
A:8PF201
|
2.8
|
15.4
|
0.7
|
C10
|
A:8PF201
|
2.8
|
12.2
|
0.7
|
F11
|
A:8PF201
|
2.9
|
18.6
|
0.7
|
NE
|
A:ARG127
|
3.1
|
10.4
|
1.0
|
O09
|
A:8PF201
|
3.3
|
8.4
|
0.7
|
F01
|
A:8PF201
|
3.4
|
14.2
|
0.7
|
CE1
|
A:PHE17
|
3.4
|
11.6
|
1.0
|
CD1
|
A:LEU118
|
3.4
|
10.1
|
1.0
|
CD
|
A:ARG127
|
3.6
|
11.2
|
1.0
|
CZ
|
A:PHE17
|
3.7
|
12.9
|
1.0
|
CZ
|
A:ARG127
|
3.8
|
10.0
|
1.0
|
NH2
|
A:ARG127
|
3.9
|
12.2
|
1.0
|
CD1
|
A:PHE17
|
4.2
|
10.1
|
1.0
|
CD2
|
A:LEU116
|
4.2
|
9.6
|
1.0
|
C13
|
A:8PF201
|
4.3
|
12.8
|
0.7
|
CG
|
A:LEU118
|
4.6
|
8.3
|
1.0
|
CE2
|
A:PHE17
|
4.7
|
12.4
|
1.0
|
CD2
|
A:LEU118
|
4.7
|
12.3
|
1.0
|
F14
|
A:8PF201
|
4.7
|
18.0
|
0.7
|
F21
|
A:8PF202
|
4.8
|
53.0
|
0.7
|
NH1
|
A:ARG127
|
4.8
|
11.1
|
1.0
|
F20
|
A:8PF201
|
4.9
|
17.8
|
0.7
|
F15
|
A:8PF201
|
4.9
|
17.2
|
0.7
|
|
Fluorine binding site 4 out
of 30 in 7fek
Go back to
Fluorine Binding Sites List in 7fek
Fluorine binding site 4 out
of 30 in the The 1.05 Angstrom X-Ray Structure of the Human Heart Fatty Acid- Binding Protein Complexed with Perfluorooctanoic Acid
Mono view
Stereo pair view
|
A full contact list of Fluorine with other atoms in the F binding
site number 4 of The 1.05 Angstrom X-Ray Structure of the Human Heart Fatty Acid- Binding Protein Complexed with Perfluorooctanoic Acid within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:F201
b:17.0
occ:0.66
|
F06
|
A:8PF201
|
0.0
|
17.0
|
0.7
|
C04
|
A:8PF201
|
1.5
|
11.3
|
0.7
|
F05
|
A:8PF201
|
2.1
|
15.0
|
0.7
|
C02
|
A:8PF201
|
2.3
|
10.7
|
0.7
|
C07
|
A:8PF201
|
2.4
|
8.4
|
0.7
|
F01
|
A:8PF201
|
2.5
|
14.2
|
0.7
|
F11
|
A:8PF201
|
2.6
|
18.6
|
0.7
|
O08
|
A:8PF201
|
2.7
|
8.3
|
0.7
|
C10
|
A:8PF201
|
3.0
|
12.2
|
0.7
|
F21
|
A:8PF202
|
3.1
|
53.0
|
0.7
|
NH2
|
A:ARG127
|
3.2
|
12.2
|
1.0
|
O09
|
A:8PF201
|
3.3
|
8.4
|
0.7
|
F20
|
A:8PF202
|
3.4
|
81.8
|
0.7
|
F03
|
A:8PF201
|
3.5
|
15.4
|
0.7
|
CZ
|
A:PHE17
|
3.5
|
12.9
|
1.0
|
F12
|
A:8PF201
|
3.7
|
15.8
|
0.7
|
C19
|
A:8PF202
|
3.7
|
138.8
|
0.7
|
F25
|
A:8PF202
|
3.8
|
97.6
|
0.7
|
NE
|
A:ARG127
|
3.8
|
10.4
|
1.0
|
CZ
|
A:ARG127
|
3.8
|
10.0
|
1.0
|
CE1
|
A:PHE17
|
4.0
|
11.6
|
1.0
|
F15
|
A:8PF201
|
4.2
|
17.2
|
0.7
|
C13
|
A:8PF201
|
4.2
|
12.8
|
0.7
|
CE2
|
A:PHE17
|
4.3
|
12.4
|
1.0
|
C22
|
A:8PF202
|
4.4
|
93.4
|
0.7
|
CG
|
A:PRO39
|
4.4
|
14.9
|
1.0
|
O
|
A:HOH364
|
4.5
|
16.4
|
0.6
|
F17
|
A:8PF202
|
4.8
|
99.9
|
0.7
|
OH
|
A:TYR129
|
4.8
|
12.3
|
1.0
|
F14
|
A:8PF201
|
4.8
|
18.0
|
0.7
|
C16
|
A:8PF202
|
4.9
|
139.3
|
0.7
|
CD
|
A:ARG127
|
4.9
|
11.2
|
1.0
|
NH1
|
A:ARG127
|
4.9
|
11.1
|
1.0
|
|
Fluorine binding site 5 out
of 30 in 7fek
Go back to
Fluorine Binding Sites List in 7fek
Fluorine binding site 5 out
of 30 in the The 1.05 Angstrom X-Ray Structure of the Human Heart Fatty Acid- Binding Protein Complexed with Perfluorooctanoic Acid
Mono view
Stereo pair view
|
A full contact list of Fluorine with other atoms in the F binding
site number 5 of The 1.05 Angstrom X-Ray Structure of the Human Heart Fatty Acid- Binding Protein Complexed with Perfluorooctanoic Acid within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:F201
b:18.6
occ:0.66
|
F11
|
A:8PF201
|
0.0
|
18.6
|
0.7
|
C10
|
A:8PF201
|
1.4
|
12.2
|
0.7
|
F12
|
A:8PF201
|
2.1
|
15.8
|
0.7
|
C13
|
A:8PF201
|
2.3
|
12.8
|
0.7
|
C02
|
A:8PF201
|
2.4
|
10.7
|
0.7
|
F06
|
A:8PF201
|
2.6
|
17.0
|
0.7
|
F15
|
A:8PF201
|
2.6
|
17.2
|
0.7
|
F21
|
A:8PF202
|
2.6
|
53.0
|
0.7
|
F20
|
A:8PF201
|
2.7
|
17.8
|
0.7
|
C04
|
A:8PF201
|
2.8
|
11.3
|
0.7
|
F21
|
A:8PF201
|
2.8
|
26.3
|
0.7
|
F01
|
A:8PF201
|
2.9
|
14.2
|
0.7
|
F05
|
A:8PF201
|
2.9
|
15.0
|
0.7
|
CZ
|
A:PHE17
|
3.0
|
12.9
|
1.0
|
C16
|
A:8PF201
|
3.1
|
13.9
|
0.7
|
C19
|
A:8PF201
|
3.1
|
13.3
|
0.7
|
CE1
|
A:PHE17
|
3.2
|
11.6
|
1.0
|
F14
|
A:8PF201
|
3.4
|
18.0
|
0.7
|
F03
|
A:8PF201
|
3.5
|
15.4
|
0.7
|
F18
|
A:8PF201
|
3.7
|
17.4
|
0.7
|
C19
|
A:8PF202
|
3.9
|
138.8
|
0.7
|
F14
|
A:8PF202
|
4.1
|
91.1
|
0.7
|
F17
|
A:8PF201
|
4.1
|
18.7
|
0.7
|
F25
|
A:8PF202
|
4.2
|
97.6
|
0.7
|
F11
|
A:8PF202
|
4.2
|
63.8
|
0.7
|
CE2
|
A:PHE17
|
4.3
|
12.4
|
1.0
|
C07
|
A:8PF201
|
4.3
|
8.4
|
0.7
|
F20
|
A:8PF202
|
4.4
|
81.8
|
0.7
|
C22
|
A:8PF201
|
4.5
|
12.9
|
0.7
|
CD1
|
A:PHE17
|
4.6
|
10.1
|
1.0
|
C22
|
A:8PF202
|
4.6
|
93.4
|
0.7
|
C16
|
A:8PF202
|
4.8
|
139.3
|
0.7
|
C13
|
A:8PF202
|
4.8
|
100.2
|
0.7
|
F25
|
A:8PF201
|
4.9
|
22.3
|
0.7
|
O08
|
A:8PF201
|
5.0
|
8.3
|
0.7
|
O09
|
A:8PF201
|
5.0
|
8.4
|
0.7
|
|
Fluorine binding site 6 out
of 30 in 7fek
Go back to
Fluorine Binding Sites List in 7fek
Fluorine binding site 6 out
of 30 in the The 1.05 Angstrom X-Ray Structure of the Human Heart Fatty Acid- Binding Protein Complexed with Perfluorooctanoic Acid
Mono view
Stereo pair view
|
A full contact list of Fluorine with other atoms in the F binding
site number 6 of The 1.05 Angstrom X-Ray Structure of the Human Heart Fatty Acid- Binding Protein Complexed with Perfluorooctanoic Acid within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:F201
b:15.8
occ:0.66
|
F12
|
A:8PF201
|
0.0
|
15.8
|
0.7
|
C10
|
A:8PF201
|
1.3
|
12.2
|
0.7
|
F11
|
A:8PF201
|
2.1
|
18.6
|
0.7
|
C13
|
A:8PF201
|
2.3
|
12.8
|
0.7
|
C02
|
A:8PF201
|
2.3
|
10.7
|
0.7
|
F03
|
A:8PF201
|
2.6
|
15.4
|
0.7
|
F20
|
A:8PF201
|
2.7
|
17.8
|
0.7
|
F05
|
A:8PF201
|
2.7
|
15.0
|
0.7
|
F18
|
A:8PF201
|
2.8
|
17.4
|
0.7
|
C16
|
A:8PF201
|
2.8
|
13.9
|
0.7
|
F14
|
A:8PF201
|
2.9
|
18.0
|
0.7
|
C04
|
A:8PF201
|
3.0
|
11.3
|
0.7
|
C19
|
A:8PF201
|
3.3
|
13.3
|
0.7
|
F15
|
A:8PF201
|
3.4
|
17.2
|
0.7
|
F01
|
A:8PF201
|
3.5
|
14.2
|
0.7
|
CD1
|
A:LEU118
|
3.6
|
10.1
|
1.0
|
CE1
|
A:PHE17
|
3.6
|
11.6
|
1.0
|
F06
|
A:8PF201
|
3.7
|
17.0
|
0.7
|
CE2
|
A:TYR20
|
3.8
|
8.3
|
1.0
|
F21
|
A:8PF201
|
3.9
|
26.3
|
0.7
|
F17
|
A:8PF201
|
4.1
|
18.7
|
0.7
|
CZ
|
A:PHE17
|
4.1
|
12.9
|
1.0
|
CD2
|
A:TYR20
|
4.3
|
8.3
|
1.0
|
C07
|
A:8PF201
|
4.4
|
8.4
|
0.7
|
CD2
|
A:LEU118
|
4.4
|
12.3
|
1.0
|
C22
|
A:8PF201
|
4.6
|
12.9
|
0.7
|
CG
|
A:LEU118
|
4.6
|
8.3
|
1.0
|
F21
|
A:8PF202
|
4.6
|
53.0
|
0.7
|
CD1
|
A:PHE17
|
4.7
|
10.1
|
1.0
|
F23
|
A:8PF201
|
4.8
|
27.7
|
0.7
|
CZ
|
A:TYR20
|
4.8
|
7.7
|
1.0
|
O
|
A:HOH369
|
4.8
|
9.3
|
1.0
|
CD2
|
A:LEU105
|
4.9
|
11.4
|
1.0
|
O09
|
A:8PF201
|
4.9
|
8.4
|
0.7
|
F25
|
A:8PF201
|
4.9
|
22.3
|
0.7
|
OH
|
A:TYR20
|
5.0
|
8.5
|
1.0
|
|
Fluorine binding site 7 out
of 30 in 7fek
Go back to
Fluorine Binding Sites List in 7fek
Fluorine binding site 7 out
of 30 in the The 1.05 Angstrom X-Ray Structure of the Human Heart Fatty Acid- Binding Protein Complexed with Perfluorooctanoic Acid
Mono view
Stereo pair view
|
A full contact list of Fluorine with other atoms in the F binding
site number 7 of The 1.05 Angstrom X-Ray Structure of the Human Heart Fatty Acid- Binding Protein Complexed with Perfluorooctanoic Acid within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:F201
b:18.0
occ:0.66
|
F14
|
A:8PF201
|
0.0
|
18.0
|
0.7
|
C13
|
A:8PF201
|
1.3
|
12.8
|
0.7
|
F15
|
A:8PF201
|
2.0
|
17.2
|
0.7
|
C16
|
A:8PF201
|
2.3
|
13.9
|
0.7
|
C10
|
A:8PF201
|
2.3
|
12.2
|
0.7
|
F18
|
A:8PF201
|
2.6
|
17.4
|
0.7
|
F17
|
A:8PF201
|
2.6
|
18.7
|
0.7
|
F03
|
A:8PF201
|
2.8
|
15.4
|
0.7
|
C02
|
A:8PF201
|
2.8
|
10.7
|
0.7
|
F01
|
A:8PF201
|
2.8
|
14.2
|
0.7
|
F12
|
A:8PF201
|
2.9
|
15.8
|
0.7
|
O
|
A:HOH418
|
3.0
|
13.4
|
1.0
|
O
|
A:HOH413
|
3.2
|
9.6
|
1.0
|
O
|
A:HOH396
|
3.4
|
11.2
|
1.0
|
F11
|
A:8PF201
|
3.4
|
18.6
|
0.7
|
C19
|
A:8PF201
|
3.6
|
13.3
|
0.7
|
O
|
A:HOH460
|
4.0
|
9.7
|
0.4
|
O
|
A:HOH369
|
4.1
|
9.3
|
1.0
|
F20
|
A:8PF201
|
4.1
|
17.8
|
0.7
|
F21
|
A:8PF201
|
4.2
|
26.3
|
0.7
|
O
|
A:HOH368
|
4.2
|
13.5
|
1.0
|
C04
|
A:8PF201
|
4.2
|
11.3
|
0.7
|
O
|
A:HOH460
|
4.5
|
8.0
|
0.4
|
CD2
|
A:LEU105
|
4.5
|
11.4
|
1.0
|
F25
|
A:8PF202
|
4.7
|
97.6
|
0.7
|
F05
|
A:8PF201
|
4.7
|
15.0
|
0.7
|
F21
|
A:8PF202
|
4.7
|
53.0
|
0.7
|
F23
|
A:8PF201
|
4.8
|
27.7
|
0.7
|
CB
|
A:ALA76
|
4.8
|
13.3
|
1.0
|
F06
|
A:8PF201
|
4.8
|
17.0
|
0.7
|
C22
|
A:8PF201
|
4.8
|
12.9
|
0.7
|
O
|
A:HOH460
|
4.9
|
8.9
|
0.2
|
|
Fluorine binding site 8 out
of 30 in 7fek
Go back to
Fluorine Binding Sites List in 7fek
Fluorine binding site 8 out
of 30 in the The 1.05 Angstrom X-Ray Structure of the Human Heart Fatty Acid- Binding Protein Complexed with Perfluorooctanoic Acid
Mono view
Stereo pair view
|
A full contact list of Fluorine with other atoms in the F binding
site number 8 of The 1.05 Angstrom X-Ray Structure of the Human Heart Fatty Acid- Binding Protein Complexed with Perfluorooctanoic Acid within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:F201
b:17.2
occ:0.66
|
F15
|
A:8PF201
|
0.0
|
17.2
|
0.7
|
C13
|
A:8PF201
|
1.4
|
12.8
|
0.7
|
F14
|
A:8PF201
|
2.0
|
18.0
|
0.7
|
C16
|
A:8PF201
|
2.3
|
13.9
|
0.7
|
C10
|
A:8PF201
|
2.4
|
12.2
|
0.7
|
F17
|
A:8PF201
|
2.5
|
18.7
|
0.7
|
F11
|
A:8PF201
|
2.6
|
18.6
|
0.7
|
F01
|
A:8PF201
|
2.6
|
14.2
|
0.7
|
F21
|
A:8PF201
|
2.9
|
26.3
|
0.7
|
F21
|
A:8PF202
|
2.9
|
53.0
|
0.7
|
C19
|
A:8PF201
|
3.1
|
13.3
|
0.7
|
C02
|
A:8PF201
|
3.1
|
10.7
|
0.7
|
F11
|
A:8PF202
|
3.2
|
63.8
|
0.7
|
F25
|
A:8PF202
|
3.2
|
97.6
|
0.7
|
F18
|
A:8PF201
|
3.4
|
17.4
|
0.7
|
O
|
A:HOH396
|
3.4
|
11.2
|
1.0
|
F12
|
A:8PF201
|
3.4
|
15.8
|
0.7
|
CB
|
A:ALA76
|
3.5
|
13.3
|
1.0
|
F23
|
A:8PF202
|
3.8
|
90.8
|
0.7
|
F20
|
A:8PF201
|
3.8
|
17.8
|
0.7
|
O
|
A:HOH413
|
3.8
|
9.6
|
1.0
|
F03
|
A:8PF201
|
3.8
|
15.4
|
0.7
|
C22
|
A:8PF202
|
3.9
|
93.4
|
0.7
|
C19
|
A:8PF202
|
3.9
|
138.8
|
0.7
|
F06
|
A:8PF201
|
4.2
|
17.0
|
0.7
|
C04
|
A:8PF201
|
4.3
|
11.3
|
0.7
|
C22
|
A:8PF201
|
4.3
|
12.9
|
0.7
|
C10
|
A:8PF202
|
4.5
|
62.6
|
0.7
|
F24
|
A:8PF201
|
4.6
|
24.0
|
0.7
|
O
|
A:HOH418
|
4.7
|
13.4
|
1.0
|
F14
|
A:8PF202
|
4.7
|
91.1
|
0.7
|
F05
|
A:8PF202
|
4.7
|
51.1
|
0.7
|
CA
|
A:ALA76
|
4.8
|
12.7
|
1.0
|
N
|
A:ALA76
|
4.8
|
10.8
|
1.0
|
F23
|
A:8PF201
|
4.8
|
27.7
|
0.7
|
F20
|
A:8PF202
|
4.9
|
81.8
|
0.7
|
F05
|
A:8PF201
|
4.9
|
15.0
|
0.7
|
C13
|
A:8PF202
|
4.9
|
100.2
|
0.7
|
O
|
A:HOH368
|
5.0
|
13.5
|
1.0
|
C16
|
A:8PF202
|
5.0
|
139.3
|
0.7
|
|
Fluorine binding site 9 out
of 30 in 7fek
Go back to
Fluorine Binding Sites List in 7fek
Fluorine binding site 9 out
of 30 in the The 1.05 Angstrom X-Ray Structure of the Human Heart Fatty Acid- Binding Protein Complexed with Perfluorooctanoic Acid
Mono view
Stereo pair view
|
A full contact list of Fluorine with other atoms in the F binding
site number 9 of The 1.05 Angstrom X-Ray Structure of the Human Heart Fatty Acid- Binding Protein Complexed with Perfluorooctanoic Acid within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:F201
b:18.7
occ:0.66
|
F17
|
A:8PF201
|
0.0
|
18.7
|
0.7
|
C16
|
A:8PF201
|
1.4
|
13.9
|
0.7
|
F18
|
A:8PF201
|
2.1
|
17.4
|
0.7
|
C19
|
A:8PF201
|
2.2
|
13.3
|
0.7
|
C13
|
A:8PF201
|
2.3
|
12.8
|
0.7
|
F15
|
A:8PF201
|
2.5
|
17.2
|
0.7
|
F14
|
A:8PF201
|
2.6
|
18.0
|
0.7
|
F23
|
A:8PF201
|
2.7
|
27.7
|
0.7
|
C22
|
A:8PF201
|
2.8
|
12.9
|
0.7
|
F21
|
A:8PF201
|
2.9
|
26.3
|
0.7
|
F24
|
A:8PF201
|
3.0
|
24.0
|
0.7
|
OD1
|
A:ASP77
|
3.1
|
12.4
|
1.0
|
F20
|
A:8PF201
|
3.4
|
17.8
|
0.7
|
O
|
A:HOH413
|
3.7
|
9.6
|
1.0
|
NH2
|
A:ARG79
|
3.7
|
9.6
|
1.0
|
C10
|
A:8PF201
|
3.7
|
12.2
|
0.7
|
O
|
A:HOH418
|
3.8
|
13.4
|
1.0
|
CB
|
A:ALA76
|
3.8
|
13.3
|
1.0
|
N
|
A:ALA76
|
4.0
|
10.8
|
1.0
|
F25
|
A:8PF201
|
4.0
|
22.3
|
0.7
|
CG
|
A:ASP77
|
4.0
|
13.4
|
1.0
|
N
|
A:ASP77
|
4.1
|
12.9
|
1.0
|
F12
|
A:8PF201
|
4.1
|
15.8
|
0.7
|
O
|
A:HOH369
|
4.1
|
9.3
|
1.0
|
F11
|
A:8PF201
|
4.1
|
18.6
|
0.7
|
F05
|
A:8PF202
|
4.3
|
51.1
|
0.7
|
F11
|
A:8PF202
|
4.3
|
63.8
|
0.7
|
CB
|
A:THR75
|
4.3
|
9.8
|
1.0
|
CA
|
A:ALA76
|
4.4
|
12.7
|
1.0
|
CB
|
A:ASP77
|
4.6
|
14.1
|
1.0
|
OG1
|
A:THR75
|
4.6
|
11.0
|
1.0
|
C
|
A:ALA76
|
4.7
|
14.1
|
1.0
|
OD2
|
A:ASP77
|
4.8
|
13.6
|
1.0
|
C
|
A:THR75
|
4.9
|
10.7
|
1.0
|
C02
|
A:8PF201
|
4.9
|
10.7
|
0.7
|
F01
|
A:8PF201
|
4.9
|
14.2
|
0.7
|
O
|
A:HOH396
|
5.0
|
11.2
|
1.0
|
CZ
|
A:ARG79
|
5.0
|
9.1
|
1.0
|
CA
|
A:ASP77
|
5.0
|
14.1
|
1.0
|
|
Fluorine binding site 10 out
of 30 in 7fek
Go back to
Fluorine Binding Sites List in 7fek
Fluorine binding site 10 out
of 30 in the The 1.05 Angstrom X-Ray Structure of the Human Heart Fatty Acid- Binding Protein Complexed with Perfluorooctanoic Acid
Mono view
Stereo pair view
|
A full contact list of Fluorine with other atoms in the F binding
site number 10 of The 1.05 Angstrom X-Ray Structure of the Human Heart Fatty Acid- Binding Protein Complexed with Perfluorooctanoic Acid within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:F201
b:17.4
occ:0.66
|
F18
|
A:8PF201
|
0.0
|
17.4
|
0.7
|
C16
|
A:8PF201
|
1.2
|
13.9
|
0.7
|
F17
|
A:8PF201
|
2.1
|
18.7
|
0.7
|
C19
|
A:8PF201
|
2.1
|
13.3
|
0.7
|
C13
|
A:8PF201
|
2.2
|
12.8
|
0.7
|
F23
|
A:8PF201
|
2.5
|
27.7
|
0.7
|
F20
|
A:8PF201
|
2.5
|
17.8
|
0.7
|
F14
|
A:8PF201
|
2.6
|
18.0
|
0.7
|
F12
|
A:8PF201
|
2.8
|
15.8
|
0.7
|
C22
|
A:8PF201
|
2.9
|
12.9
|
0.7
|
O
|
A:HOH369
|
2.9
|
9.3
|
1.0
|
C10
|
A:8PF201
|
3.0
|
12.2
|
0.7
|
F21
|
A:8PF201
|
3.3
|
26.3
|
0.7
|
F15
|
A:8PF201
|
3.4
|
17.2
|
0.7
|
F25
|
A:8PF201
|
3.6
|
22.3
|
0.7
|
NH2
|
A:ARG79
|
3.7
|
9.6
|
1.0
|
CE2
|
A:TYR20
|
3.7
|
8.3
|
1.0
|
F11
|
A:8PF201
|
3.7
|
18.6
|
0.7
|
O
|
A:HOH418
|
3.8
|
13.4
|
1.0
|
F24
|
A:8PF201
|
3.8
|
24.0
|
0.7
|
OH
|
A:TYR20
|
4.1
|
8.5
|
1.0
|
CD1
|
A:LEU24
|
4.1
|
14.2
|
1.0
|
C02
|
A:8PF201
|
4.3
|
10.7
|
0.7
|
F03
|
A:8PF201
|
4.4
|
15.4
|
0.7
|
CZ
|
A:TYR20
|
4.4
|
7.7
|
1.0
|
OD1
|
A:ASP77
|
4.4
|
12.4
|
1.0
|
CD2
|
A:TYR20
|
4.7
|
8.3
|
1.0
|
O
|
A:HOH413
|
4.9
|
9.6
|
1.0
|
F01
|
A:8PF201
|
4.9
|
14.2
|
0.7
|
CZ
|
A:ARG79
|
4.9
|
9.1
|
1.0
|
|
Reference:
S.Sugiyama,
K.Kakinouchi,
T.Hara,
S.Matsuoka,
H.Tsuchikawa,
M.Sonoyama,
Y.Inoue,
F.Hayashi,
M.Murata.
The 1.05 Angstrom X-Ray Structure of the Human Heart Fatty Acid-Binding Protein Complexed with Perfluorooctanoic Acid To Be Published.
Page generated: Fri Aug 2 06:54:56 2024
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