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Fluorine in PDB 7fu4: Crystal Structure of Human Cyclic Gmp-Amp Synthase in Complex with 2- [(2-Fluoro-4-Phenylphenyl)Methylamino]-5-Propyl-4H-[1,2,4]Triazolo[1, 5-A]Pyrimidin-7-One

Enzymatic activity of Crystal Structure of Human Cyclic Gmp-Amp Synthase in Complex with 2- [(2-Fluoro-4-Phenylphenyl)Methylamino]-5-Propyl-4H-[1,2,4]Triazolo[1, 5-A]Pyrimidin-7-One

All present enzymatic activity of Crystal Structure of Human Cyclic Gmp-Amp Synthase in Complex with 2- [(2-Fluoro-4-Phenylphenyl)Methylamino]-5-Propyl-4H-[1,2,4]Triazolo[1, 5-A]Pyrimidin-7-One:
2.7.7.86;

Protein crystallography data

The structure of Crystal Structure of Human Cyclic Gmp-Amp Synthase in Complex with 2- [(2-Fluoro-4-Phenylphenyl)Methylamino]-5-Propyl-4H-[1,2,4]Triazolo[1, 5-A]Pyrimidin-7-One, PDB code: 7fu4 was solved by L.Leibrock, J.Benz, K.Groebke-Zbinden, D.Hunziker, M.G.Rudolph, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 43.54 / 1.93
Space group P 21 2 21
Cell size a, b, c (Å), α, β, γ (°) 45.171, 59.343, 163.233, 90, 90, 90
R / Rfree (%) 20.7 / 25.9

Other elements in 7fu4:

The structure of Crystal Structure of Human Cyclic Gmp-Amp Synthase in Complex with 2- [(2-Fluoro-4-Phenylphenyl)Methylamino]-5-Propyl-4H-[1,2,4]Triazolo[1, 5-A]Pyrimidin-7-One also contains other interesting chemical elements:

Zinc (Zn) 1 atom

Fluorine Binding Sites:

The binding sites of Fluorine atom in the Crystal Structure of Human Cyclic Gmp-Amp Synthase in Complex with 2- [(2-Fluoro-4-Phenylphenyl)Methylamino]-5-Propyl-4H-[1,2,4]Triazolo[1, 5-A]Pyrimidin-7-One (pdb code 7fu4). This binding sites where shown within 5.0 Angstroms radius around Fluorine atom.
In total only one binding site of Fluorine was determined in the Crystal Structure of Human Cyclic Gmp-Amp Synthase in Complex with 2- [(2-Fluoro-4-Phenylphenyl)Methylamino]-5-Propyl-4H-[1,2,4]Triazolo[1, 5-A]Pyrimidin-7-One, PDB code: 7fu4:

Fluorine binding site 1 out of 1 in 7fu4

Go back to Fluorine Binding Sites List in 7fu4
Fluorine binding site 1 out of 1 in the Crystal Structure of Human Cyclic Gmp-Amp Synthase in Complex with 2- [(2-Fluoro-4-Phenylphenyl)Methylamino]-5-Propyl-4H-[1,2,4]Triazolo[1, 5-A]Pyrimidin-7-One


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 1 of Crystal Structure of Human Cyclic Gmp-Amp Synthase in Complex with 2- [(2-Fluoro-4-Phenylphenyl)Methylamino]-5-Propyl-4H-[1,2,4]Triazolo[1, 5-A]Pyrimidin-7-One within 5.0Å range:
probe atom residue distance (Å) B Occ
A:F602

b:55.0
occ:1.00
 F1 A:YMO602 0.0 55.0 1.0
C2 A:YMO602 1.3 52.2 1.0
C3 A:YMO602 2.3 51.0 1.0
C7 A:YMO602 2.3 46.7 1.0
C14 A:YMO602 2.8 44.4 1.0
ND2 A:ASN482 3.2 39.1 1.0
CB A:ALA247 3.3 50.7 1.0
CG A:ASN482 3.4 42.4 1.0
CD1 A:ILE485 3.5 40.8 1.0
C4 A:YMO602 3.6 56.2 1.0
C6 A:YMO602 3.6 54.6 1.0
CG A:PHE488 3.8 48.9 1.0
CB A:ASN482 3.9 42.5 1.0
OD1 A:ASN482 3.9 42.3 1.0
CB A:PHE488 4.0 44.9 1.0
CD1 A:PHE488 4.1 48.9 1.0
C5 A:YMO602 4.1 54.2 1.0
CD2 A:PHE488 4.2 42.7 1.0
N15 A:YMO602 4.3 44.0 1.0
CG1 A:ILE485 4.3 44.4 1.0
CB A:ILE485 4.3 45.6 1.0
CA A:ALA247 4.6 51.3 1.0
CE1 A:PHE488 4.6 46.4 1.0
CE2 A:PHE488 4.8 44.5 1.0
N25 A:YMO602 4.8 39.9 1.0
C8 A:YMO602 4.9 55.4 1.0
CG2 A:ILE485 4.9 49.5 1.0
CZ A:PHE488 4.9 51.2 1.0

Reference:

K.Groebke-Zbinden, A.Vandemeulebroucke, M.Hilbert, M.G.Rudolph. Crystal Structure of A Human Cyclic Gmp-Amp Synthase Complex To Be Published.
Page generated: Fri Aug 2 07:13:14 2024

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