Fluorine in PDB 7g40: Crystal Structure of Rat Autotaxin in Complex with 1H-Benzotriazol-5- Yl-[Rac-(1R,2S,6R,7S)-9-[1-(2,2,2-Trifluoroethoxy)Isoquinoline-3- Carbonyl]-4,9-Diazatricyclo[5.3.0.02,6]Decan-4-Yl]Methanone, I.E. Smiles N1(C[C@H]2[C@@H](C1)[C@H]1[C@@H]2CN(C1)C(=O)C1CCC2C(C1)N=NN2) C(=O)C1NC(C2C(C1)CCCC2)Occ(F)(F)F with IC50=0.0187536 Microm
Enzymatic activity of Crystal Structure of Rat Autotaxin in Complex with 1H-Benzotriazol-5- Yl-[Rac-(1R,2S,6R,7S)-9-[1-(2,2,2-Trifluoroethoxy)Isoquinoline-3- Carbonyl]-4,9-Diazatricyclo[5.3.0.02,6]Decan-4-Yl]Methanone, I.E. Smiles N1(C[C@H]2[C@@H](C1)[C@H]1[C@@H]2CN(C1)C(=O)C1CCC2C(C1)N=NN2) C(=O)C1NC(C2C(C1)CCCC2)Occ(F)(F)F with IC50=0.0187536 Microm
All present enzymatic activity of Crystal Structure of Rat Autotaxin in Complex with 1H-Benzotriazol-5- Yl-[Rac-(1R,2S,6R,7S)-9-[1-(2,2,2-Trifluoroethoxy)Isoquinoline-3- Carbonyl]-4,9-Diazatricyclo[5.3.0.02,6]Decan-4-Yl]Methanone, I.E. Smiles N1(C[C@H]2[C@@H](C1)[C@H]1[C@@H]2CN(C1)C(=O)C1CCC2C(C1)N=NN2) C(=O)C1NC(C2C(C1)CCCC2)Occ(F)(F)F with IC50=0.0187536 Microm:
3.1.4.39;
Protein crystallography data
The structure of Crystal Structure of Rat Autotaxin in Complex with 1H-Benzotriazol-5- Yl-[Rac-(1R,2S,6R,7S)-9-[1-(2,2,2-Trifluoroethoxy)Isoquinoline-3- Carbonyl]-4,9-Diazatricyclo[5.3.0.02,6]Decan-4-Yl]Methanone, I.E. Smiles N1(C[C@H]2[C@@H](C1)[C@H]1[C@@H]2CN(C1)C(=O)C1CCC2C(C1)N=NN2) C(=O)C1NC(C2C(C1)CCCC2)Occ(F)(F)F with IC50=0.0187536 Microm, PDB code: 7g40
was solved by
M.Stihle,
J.Benz,
D.Hunziker,
P.Mattei,
M.G.Rudolph,
with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:
Resolution Low / High (Å)
|
48.66 /
1.89
|
Space group
|
P 21 21 21
|
Cell size a, b, c (Å), α, β, γ (°)
|
83.761,
91.458,
119.565,
90,
90,
90
|
R / Rfree (%)
|
18.7 /
22.8
|
Other elements in 7g40:
The structure of Crystal Structure of Rat Autotaxin in Complex with 1H-Benzotriazol-5- Yl-[Rac-(1R,2S,6R,7S)-9-[1-(2,2,2-Trifluoroethoxy)Isoquinoline-3- Carbonyl]-4,9-Diazatricyclo[5.3.0.02,6]Decan-4-Yl]Methanone, I.E. Smiles N1(C[C@H]2[C@@H](C1)[C@H]1[C@@H]2CN(C1)C(=O)C1CCC2C(C1)N=NN2) C(=O)C1NC(C2C(C1)CCCC2)Occ(F)(F)F with IC50=0.0187536 Microm also contains other interesting chemical elements:
Fluorine Binding Sites:
The binding sites of Fluorine atom in the Crystal Structure of Rat Autotaxin in Complex with 1H-Benzotriazol-5- Yl-[Rac-(1R,2S,6R,7S)-9-[1-(2,2,2-Trifluoroethoxy)Isoquinoline-3- Carbonyl]-4,9-Diazatricyclo[5.3.0.02,6]Decan-4-Yl]Methanone, I.E. Smiles N1(C[C@H]2[C@@H](C1)[C@H]1[C@@H]2CN(C1)C(=O)C1CCC2C(C1)N=NN2) C(=O)C1NC(C2C(C1)CCCC2)Occ(F)(F)F with IC50=0.0187536 Microm
(pdb code 7g40). This binding sites where shown within
5.0 Angstroms radius around Fluorine atom.
In total 6 binding sites of Fluorine where determined in the
Crystal Structure of Rat Autotaxin in Complex with 1H-Benzotriazol-5- Yl-[Rac-(1R,2S,6R,7S)-9-[1-(2,2,2-Trifluoroethoxy)Isoquinoline-3- Carbonyl]-4,9-Diazatricyclo[5.3.0.02,6]Decan-4-Yl]Methanone, I.E. Smiles N1(C[C@H]2[C@@H](C1)[C@H]1[C@@H]2CN(C1)C(=O)C1CCC2C(C1)N=NN2) C(=O)C1NC(C2C(C1)CCCC2)Occ(F)(F)F with IC50=0.0187536 Microm, PDB code: 7g40:
Jump to Fluorine binding site number:
1;
2;
3;
4;
5;
6;
Fluorine binding site 1 out
of 6 in 7g40
Go back to
Fluorine Binding Sites List in 7g40
Fluorine binding site 1 out
of 6 in the Crystal Structure of Rat Autotaxin in Complex with 1H-Benzotriazol-5- Yl-[Rac-(1R,2S,6R,7S)-9-[1-(2,2,2-Trifluoroethoxy)Isoquinoline-3- Carbonyl]-4,9-Diazatricyclo[5.3.0.02,6]Decan-4-Yl]Methanone, I.E. Smiles N1(C[C@H]2[C@@H](C1)[C@H]1[C@@H]2CN(C1)C(=O)C1CCC2C(C1)N=NN2) C(=O)C1NC(C2C(C1)CCCC2)Occ(F)(F)F with IC50=0.0187536 Microm
![](/pictures/F/pdb/g4/7g40-F-sphere_01.jpg) Mono view
![](/pictures/F/pdb/g4/7g40-F-sphere_01_stereo.jpg) Stereo pair view
|
A full contact list of Fluorine with other atoms in the F binding
site number 1 of Crystal Structure of Rat Autotaxin in Complex with 1H-Benzotriazol-5- Yl-[Rac-(1R,2S,6R,7S)-9-[1-(2,2,2-Trifluoroethoxy)Isoquinoline-3- Carbonyl]-4,9-Diazatricyclo[5.3.0.02,6]Decan-4-Yl]Methanone, I.E. Smiles N1(C[C@H]2[C@@H](C1)[C@H]1[C@@H]2CN(C1)C(=O)C1CCC2C(C1)N=NN2) C(=O)C1NC(C2C(C1)CCCC2)Occ(F)(F)F with IC50=0.0187536 Microm within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:F901
b:46.9
occ:0.50
|
F41
|
A:YPI901
|
0.0
|
46.9
|
0.5
|
F41
|
A:YPI901
|
0.6
|
48.8
|
0.5
|
C40
|
A:YPI901
|
0.9
|
47.7
|
0.5
|
C40
|
A:YPI901
|
1.4
|
44.8
|
0.5
|
F43
|
A:YPI901
|
1.9
|
47.9
|
0.5
|
C39
|
A:YPI901
|
1.9
|
45.9
|
0.5
|
F42
|
A:YPI901
|
2.0
|
45.1
|
0.5
|
F43
|
A:YPI901
|
2.2
|
45.6
|
0.5
|
F42
|
A:YPI901
|
2.2
|
43.2
|
0.5
|
C39
|
A:YPI901
|
2.4
|
43.3
|
0.5
|
O38
|
A:YPI901
|
2.5
|
43.5
|
0.5
|
O38
|
A:YPI901
|
3.0
|
47.4
|
0.5
|
CD1
|
A:TYR214
|
3.6
|
23.9
|
1.0
|
CE1
|
A:PHE274
|
3.6
|
56.2
|
1.0
|
CZ
|
A:PHE274
|
3.8
|
60.0
|
1.0
|
CZ3
|
A:TRP254
|
3.8
|
29.6
|
1.0
|
C30
|
A:YPI901
|
3.8
|
43.2
|
0.5
|
CH2
|
A:TRP260
|
3.9
|
28.6
|
1.0
|
C30
|
A:YPI901
|
4.1
|
46.0
|
0.5
|
CE1
|
A:TYR214
|
4.3
|
24.1
|
1.0
|
CH2
|
A:TRP254
|
4.4
|
28.4
|
1.0
|
CG
|
A:TYR214
|
4.4
|
22.9
|
1.0
|
CE3
|
A:TRP254
|
4.4
|
29.4
|
1.0
|
CB
|
A:TYR214
|
4.5
|
21.9
|
1.0
|
N29
|
A:YPI901
|
4.5
|
44.8
|
0.5
|
CZ2
|
A:TRP260
|
4.6
|
29.5
|
1.0
|
C34
|
A:YPI901
|
4.7
|
43.6
|
0.5
|
CA
|
A:TYR214
|
4.7
|
19.8
|
1.0
|
C34
|
A:YPI901
|
4.7
|
45.6
|
0.5
|
CD1
|
A:PHE274
|
4.7
|
57.4
|
1.0
|
C33
|
A:YPI901
|
4.7
|
42.9
|
0.5
|
C33
|
A:YPI901
|
4.8
|
45.1
|
0.5
|
N29
|
A:YPI901
|
4.9
|
46.4
|
0.5
|
N
|
A:TYR214
|
4.9
|
19.0
|
1.0
|
CZ3
|
A:TRP260
|
4.9
|
28.8
|
1.0
|
CE2
|
A:PHE274
|
4.9
|
61.0
|
1.0
|
|
Fluorine binding site 2 out
of 6 in 7g40
Go back to
Fluorine Binding Sites List in 7g40
Fluorine binding site 2 out
of 6 in the Crystal Structure of Rat Autotaxin in Complex with 1H-Benzotriazol-5- Yl-[Rac-(1R,2S,6R,7S)-9-[1-(2,2,2-Trifluoroethoxy)Isoquinoline-3- Carbonyl]-4,9-Diazatricyclo[5.3.0.02,6]Decan-4-Yl]Methanone, I.E. Smiles N1(C[C@H]2[C@@H](C1)[C@H]1[C@@H]2CN(C1)C(=O)C1CCC2C(C1)N=NN2) C(=O)C1NC(C2C(C1)CCCC2)Occ(F)(F)F with IC50=0.0187536 Microm
![](/pictures/F/pdb/g4/7g40-F-sphere_02.jpg) Mono view
![](/pictures/F/pdb/g4/7g40-F-sphere_02_stereo.jpg) Stereo pair view
|
A full contact list of Fluorine with other atoms in the F binding
site number 2 of Crystal Structure of Rat Autotaxin in Complex with 1H-Benzotriazol-5- Yl-[Rac-(1R,2S,6R,7S)-9-[1-(2,2,2-Trifluoroethoxy)Isoquinoline-3- Carbonyl]-4,9-Diazatricyclo[5.3.0.02,6]Decan-4-Yl]Methanone, I.E. Smiles N1(C[C@H]2[C@@H](C1)[C@H]1[C@@H]2CN(C1)C(=O)C1CCC2C(C1)N=NN2) C(=O)C1NC(C2C(C1)CCCC2)Occ(F)(F)F with IC50=0.0187536 Microm within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:F901
b:48.8
occ:0.50
|
F41
|
A:YPI901
|
0.0
|
48.8
|
0.5
|
F41
|
A:YPI901
|
0.6
|
46.9
|
0.5
|
C40
|
A:YPI901
|
1.4
|
47.7
|
0.5
|
C40
|
A:YPI901
|
1.7
|
44.8
|
0.5
|
F42
|
A:YPI901
|
2.1
|
43.2
|
0.5
|
F43
|
A:YPI901
|
2.2
|
47.9
|
0.5
|
F42
|
A:YPI901
|
2.2
|
45.1
|
0.5
|
C39
|
A:YPI901
|
2.5
|
45.9
|
0.5
|
F43
|
A:YPI901
|
2.5
|
45.6
|
0.5
|
C39
|
A:YPI901
|
2.8
|
43.3
|
0.5
|
O38
|
A:YPI901
|
3.0
|
43.5
|
0.5
|
CZ3
|
A:TRP254
|
3.4
|
29.6
|
1.0
|
CD1
|
A:TYR214
|
3.5
|
23.9
|
1.0
|
O38
|
A:YPI901
|
3.5
|
47.4
|
0.5
|
CZ
|
A:PHE274
|
3.7
|
60.0
|
1.0
|
CE1
|
A:PHE274
|
3.8
|
56.2
|
1.0
|
CH2
|
A:TRP260
|
4.0
|
28.6
|
1.0
|
CE3
|
A:TRP254
|
4.0
|
29.4
|
1.0
|
CH2
|
A:TRP254
|
4.0
|
28.4
|
1.0
|
CE1
|
A:TYR214
|
4.1
|
24.1
|
1.0
|
C30
|
A:YPI901
|
4.3
|
43.2
|
0.5
|
CG
|
A:TYR214
|
4.4
|
22.9
|
1.0
|
CZ2
|
A:TRP260
|
4.4
|
29.5
|
1.0
|
C30
|
A:YPI901
|
4.6
|
46.0
|
0.5
|
CB
|
A:TYR214
|
4.6
|
21.9
|
1.0
|
CE2
|
A:PHE274
|
4.8
|
61.0
|
1.0
|
CD1
|
A:PHE274
|
4.8
|
57.4
|
1.0
|
CA
|
A:TYR214
|
4.9
|
19.8
|
1.0
|
N29
|
A:YPI901
|
4.9
|
44.8
|
0.5
|
CD2
|
A:TRP254
|
5.0
|
29.8
|
1.0
|
CZ2
|
A:TRP254
|
5.0
|
27.8
|
1.0
|
|
Fluorine binding site 3 out
of 6 in 7g40
Go back to
Fluorine Binding Sites List in 7g40
Fluorine binding site 3 out
of 6 in the Crystal Structure of Rat Autotaxin in Complex with 1H-Benzotriazol-5- Yl-[Rac-(1R,2S,6R,7S)-9-[1-(2,2,2-Trifluoroethoxy)Isoquinoline-3- Carbonyl]-4,9-Diazatricyclo[5.3.0.02,6]Decan-4-Yl]Methanone, I.E. Smiles N1(C[C@H]2[C@@H](C1)[C@H]1[C@@H]2CN(C1)C(=O)C1CCC2C(C1)N=NN2) C(=O)C1NC(C2C(C1)CCCC2)Occ(F)(F)F with IC50=0.0187536 Microm
![](/pictures/F/pdb/g4/7g40-F-sphere_03.jpg) Mono view
![](/pictures/F/pdb/g4/7g40-F-sphere_03_stereo.jpg) Stereo pair view
|
A full contact list of Fluorine with other atoms in the F binding
site number 3 of Crystal Structure of Rat Autotaxin in Complex with 1H-Benzotriazol-5- Yl-[Rac-(1R,2S,6R,7S)-9-[1-(2,2,2-Trifluoroethoxy)Isoquinoline-3- Carbonyl]-4,9-Diazatricyclo[5.3.0.02,6]Decan-4-Yl]Methanone, I.E. Smiles N1(C[C@H]2[C@@H](C1)[C@H]1[C@@H]2CN(C1)C(=O)C1CCC2C(C1)N=NN2) C(=O)C1NC(C2C(C1)CCCC2)Occ(F)(F)F with IC50=0.0187536 Microm within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:F901
b:43.2
occ:0.50
|
F42
|
A:YPI901
|
0.0
|
43.2
|
0.5
|
C40
|
A:YPI901
|
1.4
|
44.8
|
0.5
|
F42
|
A:YPI901
|
1.5
|
45.1
|
0.5
|
C40
|
A:YPI901
|
1.9
|
47.7
|
0.5
|
F43
|
A:YPI901
|
2.0
|
47.9
|
0.5
|
F41
|
A:YPI901
|
2.1
|
48.8
|
0.5
|
F41
|
A:YPI901
|
2.2
|
46.9
|
0.5
|
F43
|
A:YPI901
|
2.2
|
45.6
|
0.5
|
C39
|
A:YPI901
|
2.4
|
43.3
|
0.5
|
CZ3
|
A:TRP254
|
2.8
|
29.6
|
1.0
|
CH2
|
A:TRP254
|
2.8
|
28.4
|
1.0
|
CD1
|
A:PHE210
|
3.1
|
40.2
|
1.0
|
CE1
|
A:PHE210
|
3.3
|
40.3
|
1.0
|
C39
|
A:YPI901
|
3.4
|
45.9
|
0.5
|
O38
|
A:YPI901
|
3.5
|
43.5
|
0.5
|
O38
|
A:YPI901
|
3.7
|
47.4
|
0.5
|
CZ2
|
A:TRP254
|
4.0
|
27.8
|
1.0
|
CE3
|
A:TRP254
|
4.0
|
29.4
|
1.0
|
CG
|
A:PHE210
|
4.4
|
34.6
|
1.0
|
CZ
|
A:PHE210
|
4.7
|
41.8
|
1.0
|
C30
|
A:YPI901
|
4.7
|
43.2
|
0.5
|
CD1
|
A:TYR214
|
4.7
|
23.9
|
1.0
|
C30
|
A:YPI901
|
4.8
|
46.0
|
0.5
|
CE2
|
A:TRP254
|
4.9
|
29.1
|
1.0
|
CB
|
A:TYR214
|
4.9
|
21.9
|
1.0
|
CD2
|
A:TRP254
|
4.9
|
29.8
|
1.0
|
N29
|
A:YPI901
|
4.9
|
44.8
|
0.5
|
CE1
|
A:PHE274
|
5.0
|
56.2
|
1.0
|
CB
|
A:PHE210
|
5.0
|
27.8
|
1.0
|
|
Fluorine binding site 4 out
of 6 in 7g40
Go back to
Fluorine Binding Sites List in 7g40
Fluorine binding site 4 out
of 6 in the Crystal Structure of Rat Autotaxin in Complex with 1H-Benzotriazol-5- Yl-[Rac-(1R,2S,6R,7S)-9-[1-(2,2,2-Trifluoroethoxy)Isoquinoline-3- Carbonyl]-4,9-Diazatricyclo[5.3.0.02,6]Decan-4-Yl]Methanone, I.E. Smiles N1(C[C@H]2[C@@H](C1)[C@H]1[C@@H]2CN(C1)C(=O)C1CCC2C(C1)N=NN2) C(=O)C1NC(C2C(C1)CCCC2)Occ(F)(F)F with IC50=0.0187536 Microm
![](/pictures/F/pdb/g4/7g40-F-sphere_04.jpg) Mono view
![](/pictures/F/pdb/g4/7g40-F-sphere_04_stereo.jpg) Stereo pair view
|
A full contact list of Fluorine with other atoms in the F binding
site number 4 of Crystal Structure of Rat Autotaxin in Complex with 1H-Benzotriazol-5- Yl-[Rac-(1R,2S,6R,7S)-9-[1-(2,2,2-Trifluoroethoxy)Isoquinoline-3- Carbonyl]-4,9-Diazatricyclo[5.3.0.02,6]Decan-4-Yl]Methanone, I.E. Smiles N1(C[C@H]2[C@@H](C1)[C@H]1[C@@H]2CN(C1)C(=O)C1CCC2C(C1)N=NN2) C(=O)C1NC(C2C(C1)CCCC2)Occ(F)(F)F with IC50=0.0187536 Microm within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:F901
b:45.1
occ:0.50
|
F42
|
A:YPI901
|
0.0
|
45.1
|
0.5
|
C39
|
A:YPI901
|
1.2
|
43.3
|
0.5
|
C40
|
A:YPI901
|
1.2
|
44.8
|
0.5
|
C40
|
A:YPI901
|
1.4
|
47.7
|
0.5
|
F42
|
A:YPI901
|
1.5
|
43.2
|
0.5
|
F41
|
A:YPI901
|
2.0
|
46.9
|
0.5
|
F43
|
A:YPI901
|
2.2
|
47.9
|
0.5
|
F41
|
A:YPI901
|
2.2
|
48.8
|
0.5
|
O38
|
A:YPI901
|
2.3
|
43.5
|
0.5
|
C39
|
A:YPI901
|
2.4
|
45.9
|
0.5
|
O38
|
A:YPI901
|
2.4
|
47.4
|
0.5
|
F43
|
A:YPI901
|
2.5
|
45.6
|
0.5
|
C30
|
A:YPI901
|
3.3
|
43.2
|
0.5
|
C30
|
A:YPI901
|
3.4
|
46.0
|
0.5
|
N29
|
A:YPI901
|
3.5
|
44.8
|
0.5
|
N29
|
A:YPI901
|
3.7
|
46.4
|
0.5
|
CE1
|
A:PHE210
|
3.7
|
40.3
|
1.0
|
CD1
|
A:PHE210
|
3.8
|
40.2
|
1.0
|
CE1
|
A:PHE274
|
3.9
|
56.2
|
1.0
|
CH2
|
A:TRP254
|
4.2
|
28.4
|
1.0
|
CZ3
|
A:TRP254
|
4.2
|
29.6
|
1.0
|
CZ
|
A:PHE274
|
4.4
|
60.0
|
1.0
|
CD1
|
A:PHE274
|
4.4
|
57.4
|
1.0
|
C5
|
A:YPI901
|
4.4
|
52.0
|
0.5
|
C33
|
A:YPI901
|
4.6
|
42.9
|
0.5
|
C5
|
A:YPI901
|
4.6
|
51.0
|
0.5
|
C33
|
A:YPI901
|
4.6
|
45.1
|
0.5
|
C28
|
A:YPI901
|
4.8
|
46.1
|
0.5
|
CB
|
A:LEU213
|
4.8
|
20.1
|
1.0
|
CZ
|
A:PHE210
|
5.0
|
41.8
|
1.0
|
C28
|
A:YPI901
|
5.0
|
47.9
|
0.5
|
C34
|
A:YPI901
|
5.0
|
45.6
|
0.5
|
|
Fluorine binding site 5 out
of 6 in 7g40
Go back to
Fluorine Binding Sites List in 7g40
Fluorine binding site 5 out
of 6 in the Crystal Structure of Rat Autotaxin in Complex with 1H-Benzotriazol-5- Yl-[Rac-(1R,2S,6R,7S)-9-[1-(2,2,2-Trifluoroethoxy)Isoquinoline-3- Carbonyl]-4,9-Diazatricyclo[5.3.0.02,6]Decan-4-Yl]Methanone, I.E. Smiles N1(C[C@H]2[C@@H](C1)[C@H]1[C@@H]2CN(C1)C(=O)C1CCC2C(C1)N=NN2) C(=O)C1NC(C2C(C1)CCCC2)Occ(F)(F)F with IC50=0.0187536 Microm
![](/pictures/F/pdb/g4/7g40-F-sphere_05.jpg) Mono view
![](/pictures/F/pdb/g4/7g40-F-sphere_05_stereo.jpg) Stereo pair view
|
A full contact list of Fluorine with other atoms in the F binding
site number 5 of Crystal Structure of Rat Autotaxin in Complex with 1H-Benzotriazol-5- Yl-[Rac-(1R,2S,6R,7S)-9-[1-(2,2,2-Trifluoroethoxy)Isoquinoline-3- Carbonyl]-4,9-Diazatricyclo[5.3.0.02,6]Decan-4-Yl]Methanone, I.E. Smiles N1(C[C@H]2[C@@H](C1)[C@H]1[C@@H]2CN(C1)C(=O)C1CCC2C(C1)N=NN2) C(=O)C1NC(C2C(C1)CCCC2)Occ(F)(F)F with IC50=0.0187536 Microm within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:F901
b:45.6
occ:0.50
|
F43
|
A:YPI901
|
0.0
|
45.6
|
0.5
|
F43
|
A:YPI901
|
0.4
|
47.9
|
0.5
|
C40
|
A:YPI901
|
1.4
|
44.8
|
0.5
|
C40
|
A:YPI901
|
1.7
|
47.7
|
0.5
|
F41
|
A:YPI901
|
2.2
|
46.9
|
0.5
|
F42
|
A:YPI901
|
2.2
|
43.2
|
0.5
|
C39
|
A:YPI901
|
2.4
|
43.3
|
0.5
|
F41
|
A:YPI901
|
2.5
|
48.8
|
0.5
|
F42
|
A:YPI901
|
2.5
|
45.1
|
0.5
|
C39
|
A:YPI901
|
2.7
|
45.9
|
0.5
|
O38
|
A:YPI901
|
3.0
|
43.5
|
0.5
|
O38
|
A:YPI901
|
3.1
|
47.4
|
0.5
|
N
|
A:TYR214
|
3.2
|
19.0
|
1.0
|
CB
|
A:TYR214
|
3.3
|
21.9
|
1.0
|
CA
|
A:TYR214
|
3.4
|
19.8
|
1.0
|
CB
|
A:LEU213
|
3.6
|
20.1
|
1.0
|
C
|
A:LEU213
|
3.7
|
20.3
|
1.0
|
O
|
A:PHE210
|
3.8
|
22.8
|
1.0
|
CZ3
|
A:TRP254
|
3.8
|
29.6
|
1.0
|
CD1
|
A:TYR214
|
3.8
|
23.9
|
1.0
|
CG
|
A:TYR214
|
3.9
|
22.9
|
1.0
|
CD1
|
A:PHE210
|
4.0
|
40.2
|
1.0
|
CA
|
A:LEU213
|
4.2
|
20.1
|
1.0
|
O
|
A:LEU213
|
4.2
|
22.1
|
1.0
|
C30
|
A:YPI901
|
4.3
|
43.2
|
0.5
|
CH2
|
A:TRP254
|
4.4
|
28.4
|
1.0
|
C30
|
A:YPI901
|
4.5
|
46.0
|
0.5
|
CA
|
A:PHE210
|
4.6
|
24.9
|
1.0
|
C
|
A:PHE210
|
4.6
|
22.8
|
1.0
|
CE1
|
A:PHE210
|
4.7
|
40.3
|
1.0
|
CE3
|
A:TRP254
|
4.7
|
29.4
|
1.0
|
N
|
A:LEU213
|
4.9
|
18.3
|
1.0
|
CG
|
A:LEU213
|
4.9
|
20.2
|
1.0
|
C34
|
A:YPI901
|
4.9
|
43.6
|
0.5
|
CD1
|
A:LEU213
|
4.9
|
22.3
|
1.0
|
CE1
|
A:TYR214
|
5.0
|
24.1
|
1.0
|
CG
|
A:PHE210
|
5.0
|
34.6
|
1.0
|
CB
|
A:PHE210
|
5.0
|
27.8
|
1.0
|
C34
|
A:YPI901
|
5.0
|
45.6
|
0.5
|
|
Fluorine binding site 6 out
of 6 in 7g40
Go back to
Fluorine Binding Sites List in 7g40
Fluorine binding site 6 out
of 6 in the Crystal Structure of Rat Autotaxin in Complex with 1H-Benzotriazol-5- Yl-[Rac-(1R,2S,6R,7S)-9-[1-(2,2,2-Trifluoroethoxy)Isoquinoline-3- Carbonyl]-4,9-Diazatricyclo[5.3.0.02,6]Decan-4-Yl]Methanone, I.E. Smiles N1(C[C@H]2[C@@H](C1)[C@H]1[C@@H]2CN(C1)C(=O)C1CCC2C(C1)N=NN2) C(=O)C1NC(C2C(C1)CCCC2)Occ(F)(F)F with IC50=0.0187536 Microm
![](/pictures/F/pdb/g4/7g40-F-sphere_06.jpg) Mono view
![](/pictures/F/pdb/g4/7g40-F-sphere_06_stereo.jpg) Stereo pair view
|
A full contact list of Fluorine with other atoms in the F binding
site number 6 of Crystal Structure of Rat Autotaxin in Complex with 1H-Benzotriazol-5- Yl-[Rac-(1R,2S,6R,7S)-9-[1-(2,2,2-Trifluoroethoxy)Isoquinoline-3- Carbonyl]-4,9-Diazatricyclo[5.3.0.02,6]Decan-4-Yl]Methanone, I.E. Smiles N1(C[C@H]2[C@@H](C1)[C@H]1[C@@H]2CN(C1)C(=O)C1CCC2C(C1)N=NN2) C(=O)C1NC(C2C(C1)CCCC2)Occ(F)(F)F with IC50=0.0187536 Microm within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:F901
b:47.9
occ:0.50
|
F43
|
A:YPI901
|
0.0
|
47.9
|
0.5
|
F43
|
A:YPI901
|
0.4
|
45.6
|
0.5
|
C40
|
A:YPI901
|
1.0
|
44.8
|
0.5
|
C40
|
A:YPI901
|
1.4
|
47.7
|
0.5
|
F41
|
A:YPI901
|
1.9
|
46.9
|
0.5
|
F42
|
A:YPI901
|
2.0
|
43.2
|
0.5
|
C39
|
A:YPI901
|
2.1
|
43.3
|
0.5
|
F42
|
A:YPI901
|
2.2
|
45.1
|
0.5
|
F41
|
A:YPI901
|
2.2
|
48.8
|
0.5
|
C39
|
A:YPI901
|
2.5
|
45.9
|
0.5
|
O38
|
A:YPI901
|
2.7
|
43.5
|
0.5
|
O38
|
A:YPI901
|
2.8
|
47.4
|
0.5
|
N
|
A:TYR214
|
3.5
|
19.0
|
1.0
|
CB
|
A:TYR214
|
3.6
|
21.9
|
1.0
|
CB
|
A:LEU213
|
3.7
|
20.1
|
1.0
|
CA
|
A:TYR214
|
3.7
|
19.8
|
1.0
|
CZ3
|
A:TRP254
|
3.7
|
29.6
|
1.0
|
CD1
|
A:TYR214
|
3.8
|
23.9
|
1.0
|
C
|
A:LEU213
|
3.9
|
20.3
|
1.0
|
CD1
|
A:PHE210
|
4.0
|
40.2
|
1.0
|
C30
|
A:YPI901
|
4.0
|
43.2
|
0.5
|
O
|
A:PHE210
|
4.1
|
22.8
|
1.0
|
CG
|
A:TYR214
|
4.1
|
22.9
|
1.0
|
C30
|
A:YPI901
|
4.2
|
46.0
|
0.5
|
CH2
|
A:TRP254
|
4.3
|
28.4
|
1.0
|
O
|
A:LEU213
|
4.4
|
22.1
|
1.0
|
CA
|
A:LEU213
|
4.4
|
20.1
|
1.0
|
CE1
|
A:PHE210
|
4.6
|
40.3
|
1.0
|
N29
|
A:YPI901
|
4.7
|
44.8
|
0.5
|
CE3
|
A:TRP254
|
4.7
|
29.4
|
1.0
|
C34
|
A:YPI901
|
4.8
|
43.6
|
0.5
|
CA
|
A:PHE210
|
4.8
|
24.9
|
1.0
|
C34
|
A:YPI901
|
4.8
|
45.6
|
0.5
|
C33
|
A:YPI901
|
4.9
|
42.9
|
0.5
|
C
|
A:PHE210
|
4.9
|
22.8
|
1.0
|
CD1
|
A:LEU213
|
4.9
|
22.3
|
1.0
|
N29
|
A:YPI901
|
5.0
|
46.4
|
0.5
|
CE1
|
A:TYR214
|
5.0
|
24.1
|
1.0
|
CG
|
A:LEU213
|
5.0
|
20.2
|
1.0
|
|
Reference:
D.Hunziker,
S.C.Joachim,
C.Ullmer,
M.G.Rudolph.
Crystal Structure of A Rat Autotaxin Complex To Be Published.
Page generated: Sat Feb 8 17:51:54 2025
|