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Fluorine in PDB 7gee: Group Deposition Sars-Cov-2 Main Protease in Complex with Inhibitors From the Covid Moonshot -- Crystal Structure of Sars-Cov-2 Main Protease in Complex with Ben-Dnd-93268D01-5 (Mpro-X11427)

Enzymatic activity of Group Deposition Sars-Cov-2 Main Protease in Complex with Inhibitors From the Covid Moonshot -- Crystal Structure of Sars-Cov-2 Main Protease in Complex with Ben-Dnd-93268D01-5 (Mpro-X11427)

All present enzymatic activity of Group Deposition Sars-Cov-2 Main Protease in Complex with Inhibitors From the Covid Moonshot -- Crystal Structure of Sars-Cov-2 Main Protease in Complex with Ben-Dnd-93268D01-5 (Mpro-X11427):
3.4.22.69;

Protein crystallography data

The structure of Group Deposition Sars-Cov-2 Main Protease in Complex with Inhibitors From the Covid Moonshot -- Crystal Structure of Sars-Cov-2 Main Protease in Complex with Ben-Dnd-93268D01-5 (Mpro-X11427), PDB code: 7gee was solved by D.Fearon, A.Aimon, J.C.Aschenbrenner, B.H.Balcomb, F.K.R.Bertram, J.Brandao-Neto, A.Dias, A.Douangamath, L.Dunnett, A.S.Godoy, T.J.Gorrie-Stone, L.Koekemoer, T.Krojer, R.M.Lithgo, P.Lukacik, P.G.Marples, H.Mikolajek, E.Nelson, C.D.Owen, A.J.Powell, V.L.Rangel, R.Skyner, C.M.Strain-Damerell, W.Thompson, C.W.E.Tomlinson, C.Wild, M.A.Walsh, F.Von Delft, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 48.29 / 1.29
Space group C 1 2 1
Cell size a, b, c (Å), α, β, γ (°) 114.044, 53.522, 44.346, 90, 100.83, 90
R / Rfree (%) 17 / 19.8

Fluorine Binding Sites:

The binding sites of Fluorine atom in the Group Deposition Sars-Cov-2 Main Protease in Complex with Inhibitors From the Covid Moonshot -- Crystal Structure of Sars-Cov-2 Main Protease in Complex with Ben-Dnd-93268D01-5 (Mpro-X11427) (pdb code 7gee). This binding sites where shown within 5.0 Angstroms radius around Fluorine atom.
In total only one binding site of Fluorine was determined in the Group Deposition Sars-Cov-2 Main Protease in Complex with Inhibitors From the Covid Moonshot -- Crystal Structure of Sars-Cov-2 Main Protease in Complex with Ben-Dnd-93268D01-5 (Mpro-X11427), PDB code: 7gee:

Fluorine binding site 1 out of 1 in 7gee

Go back to Fluorine Binding Sites List in 7gee
Fluorine binding site 1 out of 1 in the Group Deposition Sars-Cov-2 Main Protease in Complex with Inhibitors From the Covid Moonshot -- Crystal Structure of Sars-Cov-2 Main Protease in Complex with Ben-Dnd-93268D01-5 (Mpro-X11427)


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 1 of Group Deposition Sars-Cov-2 Main Protease in Complex with Inhibitors From the Covid Moonshot -- Crystal Structure of Sars-Cov-2 Main Protease in Complex with Ben-Dnd-93268D01-5 (Mpro-X11427) within 5.0Å range:
probe atom residue distance (Å) B Occ
A:F404

b:37.8
occ:1.00
F A:NIJ404 0.0 37.8 1.0
C13 A:NIJ404 1.4 34.2 1.0
C12 A:NIJ404 2.4 33.6 1.0
C14 A:NIJ404 2.4 32.7 1.0
CB A:CYS44 3.3 19.2 1.0
CG A:MET49 3.5 48.7 1.0
C11 A:NIJ404 3.6 32.2 1.0
C9 A:NIJ404 3.6 30.4 1.0
CB A:HIS41 3.7 12.9 1.0
O A:HIS41 3.8 13.0 1.0
SG A:CYS44 3.9 19.9 1.0
CD2 A:HIS41 3.9 13.6 1.0
CG A:HIS41 4.0 13.4 1.0
C10 A:NIJ404 4.1 31.0 1.0
CB A:MET49 4.2 44.5 1.0
SD A:MET49 4.3 54.8 1.0
CA A:MET49 4.5 39.9 1.0
CA A:CYS44 4.6 19.9 1.0
C A:HIS41 4.6 12.8 1.0
CA A:HIS41 4.6 12.5 1.0
C A:CYS44 4.8 22.5 1.0
O A:CYS44 4.9 23.9 1.0
C8 A:NIJ404 4.9 28.2 1.0
NE2 A:HIS41 4.9 14.3 1.0
ND1 A:HIS41 5.0 13.6 1.0

Reference:

M.L.Boby, D.Fearon, M.Ferla, M.Filep, L.Koekemoer, M.C.Robinson, The Covid Moonshot Consortium, J.D.Chodera, A.A.Lee, N.London, A.Von Delft, F.Von Delft. Open Science Discovery of Potent Noncovalent Sars-Cov-2 Main Protease Inhibitors Science 2023.
ISSN: ESSN 1095-9203
DOI: 10.1126/SCIENCE.ABO7201
Page generated: Fri Aug 2 07:35:35 2024

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