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Fluorine in PDB 7gmy: Group Deposition Sars-Cov-2 Main Protease in Complex with Inhibitors From the Covid Moonshot -- Crystal Structure of Sars-Cov-2 Main Protease in Complex with Edj-Med-E69ED63D-13 (Mpro-P2242)

Enzymatic activity of Group Deposition Sars-Cov-2 Main Protease in Complex with Inhibitors From the Covid Moonshot -- Crystal Structure of Sars-Cov-2 Main Protease in Complex with Edj-Med-E69ED63D-13 (Mpro-P2242)

All present enzymatic activity of Group Deposition Sars-Cov-2 Main Protease in Complex with Inhibitors From the Covid Moonshot -- Crystal Structure of Sars-Cov-2 Main Protease in Complex with Edj-Med-E69ED63D-13 (Mpro-P2242):
3.4.22.69;

Protein crystallography data

The structure of Group Deposition Sars-Cov-2 Main Protease in Complex with Inhibitors From the Covid Moonshot -- Crystal Structure of Sars-Cov-2 Main Protease in Complex with Edj-Med-E69ED63D-13 (Mpro-P2242), PDB code: 7gmy was solved by D.Fearon, A.Aimon, J.C.Aschenbrenner, B.H.Balcomb, F.K.R.Bertram, J.Brandao-Neto, A.Dias, A.Douangamath, L.Dunnett, A.S.Godoy, T.J.Gorrie-Stone, L.Koekemoer, T.Krojer, R.M.Lithgo, P.Lukacik, P.G.Marples, H.Mikolajek, E.Nelson, C.D.Owen, A.J.Powell, V.L.Rangel, R.Skyner, C.M.Strain-Damerell, W.Thompson, C.W.E.Tomlinson, C.Wild, M.A.Walsh, F.Von Delft, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 72.54 / 1.84
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 68.015, 100.931, 104.34, 90, 90, 90
R / Rfree (%) 22.1 / 25.5

Other elements in 7gmy:

The structure of Group Deposition Sars-Cov-2 Main Protease in Complex with Inhibitors From the Covid Moonshot -- Crystal Structure of Sars-Cov-2 Main Protease in Complex with Edj-Med-E69ED63D-13 (Mpro-P2242) also contains other interesting chemical elements:

Chlorine (Cl) 2 atoms

Fluorine Binding Sites:

The binding sites of Fluorine atom in the Group Deposition Sars-Cov-2 Main Protease in Complex with Inhibitors From the Covid Moonshot -- Crystal Structure of Sars-Cov-2 Main Protease in Complex with Edj-Med-E69ED63D-13 (Mpro-P2242) (pdb code 7gmy). This binding sites where shown within 5.0 Angstroms radius around Fluorine atom.
In total only one binding site of Fluorine was determined in the Group Deposition Sars-Cov-2 Main Protease in Complex with Inhibitors From the Covid Moonshot -- Crystal Structure of Sars-Cov-2 Main Protease in Complex with Edj-Med-E69ED63D-13 (Mpro-P2242), PDB code: 7gmy:

Fluorine binding site 1 out of 1 in 7gmy

Go back to Fluorine Binding Sites List in 7gmy
Fluorine binding site 1 out of 1 in the Group Deposition Sars-Cov-2 Main Protease in Complex with Inhibitors From the Covid Moonshot -- Crystal Structure of Sars-Cov-2 Main Protease in Complex with Edj-Med-E69ED63D-13 (Mpro-P2242)


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 1 of Group Deposition Sars-Cov-2 Main Protease in Complex with Inhibitors From the Covid Moonshot -- Crystal Structure of Sars-Cov-2 Main Protease in Complex with Edj-Med-E69ED63D-13 (Mpro-P2242) within 5.0Å range:
probe atom residue distance (Å) B Occ
A:F407

b:46.3
occ:0.82
F A:RQF407 0.0 46.3 0.8
C13 A:RQF407 1.4 45.9 0.8
C12 A:RQF407 2.3 45.3 0.8
C14 A:RQF407 2.3 45.5 0.8
O A:HOH622 3.0 59.5 1.0
O B:HOH602 3.0 36.1 1.0
C15 A:RQF407 3.6 45.4 0.8
C11 A:RQF407 3.6 45.0 0.8
N A:ASN142 4.1 41.7 1.0
C16 A:RQF407 4.1 45.2 0.8
C1 A:RQF407 4.6 49.9 0.8
CA A:LEU141 4.6 41.1 1.0
C A:LEU141 4.6 41.3 1.0
N B:SER1 4.7 45.7 1.0
OE2 A:GLU166 4.7 47.5 1.0
OE1 A:GLU166 4.7 45.8 1.0
CB A:ASN142 4.8 44.5 1.0
C10 A:RQF407 4.8 44.7 0.8
CA A:ASN142 4.9 42.0 1.0
O A:PHE140 4.9 39.5 1.0
CD A:GLU166 5.0 45.2 1.0

Reference:

M.L.Boby, D.Fearon, M.Ferla, M.Filep, L.Koekemoer, M.C.Robinson, The Covid Moonshot Consortium, J.D.Chodera, A.A.Lee, N.London, A.Von Delft, F.Von Delft. Open Science Discovery of Potent Noncovalent Sars-Cov-2 Main Protease Inhibitors Science 2023.
ISSN: ESSN 1095-9203
DOI: 10.1126/SCIENCE.ABO7201
Page generated: Thu Dec 28 04:15:44 2023

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