Fluorine in PDB 7l4w: Crystal Structure of Human Monoacylglycerol Lipase in Complex with Compound 2D

The structure of Crystal Structure of Human Monoacylglycerol Lipase in Complex with Compound 2D, PDB code: 7l4w was solved by L.Qin, W.Lane, R.J.Skene, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	38.59 / 2.20
Space group	I 2 2 2
Cell size a, b, c (Å), α, β, γ (°)	92.623, 127.215, 135.961, 90, 90, 90
R / Rfree (%)	18.7 / 22.1

The structure of Crystal Structure of Human Monoacylglycerol Lipase in Complex with Compound 2D also contains other interesting chemical elements:

Chlorine

(Cl)

2 atoms

The binding sites of Fluorine atom in the Crystal Structure of Human Monoacylglycerol Lipase in Complex with Compound 2D (pdb code 7l4w). This binding sites where shown within 5.0 Angstroms radius around Fluorine atom.
In total 2 binding sites of Fluorine where determined in the Crystal Structure of Human Monoacylglycerol Lipase in Complex with Compound 2D, PDB code: 7l4w:
Jump to Fluorine binding site number: 1; 2;

Fluorine binding site 1 out of 2 in the Crystal Structure of Human Monoacylglycerol Lipase in Complex with Compound 2D


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 1 of Crystal Structure of Human Monoacylglycerol Lipase in Complex with Compound 2D within 5.0Å range: probe atom residue distance (Å) B Occ A:F401 b:74.5 occ:1.00 F26 A:XOV401 0.0 74.5 1.0 C5 A:XOV401 1.4 70.8 1.0 C3 A:XOV401 2.4 67.8 1.0 C2 A:XOV401 2.4 69.0 1.0 O A:GLY210 3.2 62.0 1.0 CA A:GLY210 3.4 64.2 1.0 C A:GLY210 3.5 65.5 1.0 C6 A:XOV401 3.6 65.4 1.0 C1 A:XOV401 3.7 65.7 1.0 CD1 A:LEU214 4.0 73.1 1.0 CG A:LEU214 4.1 70.6 1.0 C4 A:XOV401 4.2 64.9 1.0 N A:ILE211 4.6 66.7 1.0 CD2 A:LEU214 4.6 71.1 1.0 N A:GLY210 4.8 61.1 1.0

Fluorine binding site 2 out of 2 in the Crystal Structure of Human Monoacylglycerol Lipase in Complex with Compound 2D


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 2 of Crystal Structure of Human Monoacylglycerol Lipase in Complex with Compound 2D within 5.0Å range: probe atom residue distance (Å) B Occ B:F401 b:79.5 occ:1.00 F26 B:XOV401 0.0 79.5 1.0 C5 B:XOV401 1.3 76.9 1.0 C3 B:XOV401 2.4 72.7 1.0 C2 B:XOV401 2.4 73.1 1.0 O B:GLY210 3.4 64.4 1.0 CA B:GLY210 3.6 60.5 1.0 C6 B:XOV401 3.6 67.1 1.0 C1 B:XOV401 3.6 70.6 1.0 C B:GLY210 3.8 64.0 1.0 O B:HOH570 4.0 65.1 1.0 CD1 B:LEU214 4.1 67.5 1.0 CG B:LEU214 4.1 64.9 1.0 C4 B:XOV401 4.1 64.9 1.0 CD2 B:LEU214 4.6 66.8 1.0 N B:ILE211 4.8 63.4 1.0 N B:GLY210 5.0 59.6 1.0

S.Ikeda, H.Sugiyama, H.Tokuhara, M.Murakami, M.Nakamura, Y.Oguro, J.Aida, N.Morishita, S.Sogabe, D.R.Dougan, S.C.Gay, L.Qin, N.Arimura, Y.Takahashi, M.Sasaki, Y.Kamada, K.Aoyama, K.Kimoto, M.Kamata. Design and Synthesis of Novel Spiro Derivatives As Potent and Reversible Monoacylglycerol Lipase (Magl) Inhibitors: Bioisosteric Transformation From 3-Oxo-3,4-Dihydro-2 H -Benzo[ B ][1,4]Oxazin-6-Yl Moiety. J.Med.Chem. 2021.
ISSN: ISSN 0022-2623
PubMed: 34328319
DOI: 10.1021/ACS.JMEDCHEM.1C00432