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Fluorine in PDB 7nvo: Human Tric Complex in Open State with Nanobody Bound

Other elements in 7nvo:

The structure of Human Tric Complex in Open State with Nanobody Bound also contains other interesting chemical elements:

Aluminium (Al) 12 atoms
Magnesium (Mg) 16 atoms

Fluorine Binding Sites:

Pages:

>>> Page 1 <<< Page 2, Binding sites: 11 - 20; Page 3, Binding sites: 21 - 30; Page 4, Binding sites: 31 - 36;

Binding sites:

The binding sites of Fluorine atom in the Human Tric Complex in Open State with Nanobody Bound (pdb code 7nvo). This binding sites where shown within 5.0 Angstroms radius around Fluorine atom.
In total 36 binding sites of Fluorine where determined in the Human Tric Complex in Open State with Nanobody Bound, PDB code: 7nvo:
Jump to Fluorine binding site number: 1; 2; 3; 4; 5; 6; 7; 8; 9; 10;

Fluorine binding site 1 out of 36 in 7nvo

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Fluorine binding site 1 out of 36 in the Human Tric Complex in Open State with Nanobody Bound


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 1 of Human Tric Complex in Open State with Nanobody Bound within 5.0Å range:
probe atom residue distance (Å) B Occ
H:F603

b:58.2
occ:1.00
 F1 H:AF3603 0.0 58.2 1.0
AL H:AF3603 1.6 55.7 1.0
O2A H:ADP601 2.3 177.2 1.0
O1B H:ADP601 2.4 161.5 1.0
O3A H:ADP601 2.8 202.8 1.0
F3 H:AF3603 2.8 62.6 1.0
F2 H:AF3603 2.8 47.6 1.0
O H:HOH701 3.0 30.0 1.0
PA H:ADP601 3.1 210.3 1.0
PB H:ADP601 3.1 189.6 1.0
CG2 H:THR95 3.2 57.2 1.0
O3B H:ADP601 3.5 194.1 1.0
MG H:MG602 3.7 30.0 1.0
O1A H:ADP601 4.0 200.0 1.0
OD1 H:ASP61 4.1 65.1 1.0
O5' H:ADP601 4.3 184.4 1.0
CB H:THR95 4.5 57.2 1.0
O2B H:ADP601 4.5 179.6 1.0
N H:GLY62 4.6 63.5 1.0
C5' H:ADP601 4.7 239.2 1.0
O H:THR39 4.7 59.2 1.0
N H:GLY41 4.9 59.6 1.0

Fluorine binding site 2 out of 36 in 7nvo

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Fluorine binding site 2 out of 36 in the Human Tric Complex in Open State with Nanobody Bound


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 2 of Human Tric Complex in Open State with Nanobody Bound within 5.0Å range:
probe atom residue distance (Å) B Occ
H:F603

b:47.6
occ:1.00
 F2 H:AF3603 0.0 47.6 1.0
AL H:AF3603 1.6 55.7 1.0
MG H:MG602 2.1 30.0 1.0
O3B H:ADP601 2.5 194.1 1.0
F3 H:AF3603 2.8 62.6 1.0
F1 H:AF3603 2.8 58.2 1.0
O3A H:ADP601 3.1 202.8 1.0
PB H:ADP601 3.3 189.6 1.0
O1B H:ADP601 3.8 161.5 1.0
OD1 H:ASP61 3.8 65.1 1.0
OD1 H:ASP92 3.9 64.3 1.0
CG H:ASP61 4.3 65.1 1.0
PA H:ADP601 4.4 210.3 1.0
CG2 H:THR94 4.4 59.6 1.0
N H:GLY93 4.5 61.8 1.0
O2A H:ADP601 4.5 177.2 1.0
O2B H:ADP601 4.7 179.6 1.0
OD2 H:ASP61 4.7 65.1 1.0
CA H:ASP92 4.7 64.3 1.0
O H:HOH701 4.9 30.0 1.0
O1A H:ADP601 5.0 200.0 1.0
O H:GLY91 5.0 63.5 1.0

Fluorine binding site 3 out of 36 in 7nvo

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Fluorine binding site 3 out of 36 in the Human Tric Complex in Open State with Nanobody Bound


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 3 of Human Tric Complex in Open State with Nanobody Bound within 5.0Å range:
probe atom residue distance (Å) B Occ
H:F603

b:62.6
occ:1.00
 F3 H:AF3603 0.0 62.6 1.0
AL H:AF3603 1.6 55.7 1.0
O3B H:ADP601 2.5 194.1 1.0
O1B H:ADP601 2.6 161.5 1.0
F2 H:AF3603 2.8 47.6 1.0
F1 H:AF3603 2.8 58.2 1.0
N H:THR94 2.9 59.6 1.0
N H:THR95 2.9 57.2 1.0
PB H:ADP601 3.0 189.6 1.0
CG2 H:THR95 3.1 57.2 1.0
CG2 H:THR94 3.1 59.6 1.0
CA H:THR94 3.6 59.6 1.0
N H:GLY93 3.7 61.8 1.0
C H:THR94 3.7 59.6 1.0
C H:GLY93 3.8 61.8 1.0
CB H:THR95 3.8 57.2 1.0
CA H:GLY93 3.8 61.8 1.0
CA H:THR95 3.9 57.2 1.0
O3A H:ADP601 3.9 202.8 1.0
MG H:MG602 4.0 30.0 1.0
CB H:THR94 4.0 59.6 1.0
O2B H:ADP601 4.3 179.6 1.0
N H:SER96 4.4 56.4 1.0
O2A H:ADP601 4.6 177.2 1.0
C H:THR95 4.7 57.2 1.0
O H:THR94 4.8 59.6 1.0
C H:ASP92 4.8 64.3 1.0
N H:GLY62 4.9 63.5 1.0
O H:GLY93 4.9 61.8 1.0
OG1 H:THR94 4.9 59.6 1.0
PA H:ADP601 5.0 210.3 1.0

Fluorine binding site 4 out of 36 in 7nvo

Go back to Fluorine Binding Sites List in 7nvo
Fluorine binding site 4 out of 36 in the Human Tric Complex in Open State with Nanobody Bound


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 4 of Human Tric Complex in Open State with Nanobody Bound within 5.0Å range:
probe atom residue distance (Å) B Occ
Q:F603

b:58.2
occ:1.00
 F1 Q:AF3603 0.0 58.2 1.0
AL Q:AF3603 1.6 55.7 1.0
O1B Q:ADP601 2.8 161.5 1.0
F3 Q:AF3603 2.8 62.6 1.0
F2 Q:AF3603 2.8 47.6 1.0
O3B Q:ADP601 3.2 194.1 1.0
O3A Q:ADP601 3.3 202.8 1.0
PB Q:ADP601 3.3 189.6 1.0
O1A Q:ADP601 3.4 200.0 1.0
CG Q:ASN102 3.5 56.3 1.0
PA Q:ADP601 3.6 210.3 1.0
CB Q:ASN102 3.6 56.3 1.0
OD1 Q:ASN102 3.7 56.3 1.0
N Q:ASN102 3.7 56.3 1.0
O2A Q:ADP601 3.8 177.2 1.0
ND2 Q:ASN102 3.9 56.3 1.0
MG Q:MG602 4.1 30.0 1.0
CA Q:ASN102 4.3 56.3 1.0
CB Q:THR101 4.5 58.2 1.0
N Q:THR101 4.5 58.2 1.0
C Q:THR101 4.6 58.2 1.0
OD1 Q:ASP99 4.6 61.8 1.0
O2B Q:ADP601 4.8 179.6 1.0
CA Q:THR101 4.8 58.2 1.0
CB Q:ALA69 4.8 60.4 1.0
N Q:ALA69 4.9 60.4 1.0

Fluorine binding site 5 out of 36 in 7nvo

Go back to Fluorine Binding Sites List in 7nvo
Fluorine binding site 5 out of 36 in the Human Tric Complex in Open State with Nanobody Bound


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 5 of Human Tric Complex in Open State with Nanobody Bound within 5.0Å range:
probe atom residue distance (Å) B Occ
Q:F603

b:47.6
occ:1.00
 F2 Q:AF3603 0.0 47.6 1.0
AL Q:AF3603 1.6 55.7 1.0
F1 Q:AF3603 2.8 58.2 1.0
F3 Q:AF3603 2.8 62.6 1.0
CB Q:THR101 3.5 58.2 1.0
O Q:HOH701 3.5 30.0 1.0
OD1 Q:ASP68 3.7 62.7 1.0
OG1 Q:THR101 3.8 58.2 1.0
CB Q:ALA70 3.9 61.5 1.0
O3B Q:ADP601 4.0 194.1 1.0
CG2 Q:THR101 4.1 58.2 1.0
OD2 Q:ASP68 4.2 62.7 1.0
OD2 Q:ASP394 4.2 70.5 1.0
CG Q:ASP68 4.3 62.7 1.0
N Q:ALA70 4.3 61.5 1.0
N Q:THR101 4.5 58.2 1.0
OD1 Q:ASP99 4.5 61.8 1.0
CA Q:THR101 4.5 58.2 1.0
OD1 Q:ASP394 4.7 70.5 1.0
CA Q:ALA70 4.7 61.5 1.0
N Q:ALA69 4.8 60.4 1.0
CG Q:ASP394 4.8 70.5 1.0
N Q:ASN102 4.9 56.3 1.0
C Q:ALA69 4.9 60.4 1.0
PB Q:ADP601 5.0 189.6 1.0

Fluorine binding site 6 out of 36 in 7nvo

Go back to Fluorine Binding Sites List in 7nvo
Fluorine binding site 6 out of 36 in the Human Tric Complex in Open State with Nanobody Bound


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 6 of Human Tric Complex in Open State with Nanobody Bound within 5.0Å range:
probe atom residue distance (Å) B Occ
Q:F603

b:62.6
occ:1.00
 F3 Q:AF3603 0.0 62.6 1.0
AL Q:AF3603 1.6 55.7 1.0
OD1 Q:ASP99 2.2 61.8 1.0
MG Q:MG602 2.2 30.0 1.0
O3B Q:ADP601 2.5 194.1 1.0
F1 Q:AF3603 2.8 58.2 1.0
F2 Q:AF3603 2.8 47.6 1.0
O3A Q:ADP601 2.8 202.8 1.0
PB Q:ADP601 3.3 189.6 1.0
CG Q:ASP99 3.4 61.8 1.0
OD2 Q:ASP394 3.4 70.5 1.0
O1A Q:ADP601 3.8 200.0 1.0
PA Q:ADP601 3.9 210.3 1.0
OD2 Q:ASP99 4.0 61.8 1.0
CG Q:ASP394 4.0 70.5 1.0
O1B Q:ADP601 4.1 161.5 1.0
N Q:GLY100 4.3 59.8 1.0
CA Q:ASP99 4.4 61.8 1.0
OD1 Q:ASP394 4.4 70.5 1.0
O2B Q:ADP601 4.5 179.6 1.0
CB Q:ASP99 4.5 61.8 1.0
O Q:HOH701 4.7 30.0 1.0
N Q:THR101 4.8 58.2 1.0
C Q:ASP99 4.8 61.8 1.0
OG Q:SER170 4.9 64.2 1.0
O5' Q:ADP601 4.9 184.4 1.0
CB Q:ASP394 4.9 70.5 1.0
O2A Q:ADP601 4.9 177.2 1.0

Fluorine binding site 7 out of 36 in 7nvo

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Fluorine binding site 7 out of 36 in the Human Tric Complex in Open State with Nanobody Bound


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 7 of Human Tric Complex in Open State with Nanobody Bound within 5.0Å range:
probe atom residue distance (Å) B Occ
Z:F603

b:58.2
occ:1.00
 F1 Z:AF3603 0.0 58.2 1.0
AL Z:AF3603 1.6 55.7 1.0
O1B Z:ADP601 2.0 194.1 1.0
OD2 Z:ASP90 2.3 63.9 1.0
MG Z:MG602 2.5 30.0 1.0
F3 Z:AF3603 2.8 62.6 1.0
F2 Z:AF3603 2.8 47.6 1.0
O3A Z:ADP601 2.9 202.8 1.0
CG Z:ASP90 2.9 63.9 1.0
CE Z:LYS159 3.0 64.3 1.0
PB Z:ADP601 3.0 189.6 1.0
OD1 Z:ASP90 3.1 63.9 1.0
NZ Z:LYS159 3.1 64.3 1.0
O3B Z:ADP601 4.0 161.5 1.0
O2B Z:ADP601 4.1 179.6 1.0
CG2 Z:THR158 4.1 63.2 1.0
CB Z:ASP90 4.1 63.9 1.0
CD Z:LYS159 4.3 64.3 1.0
PA Z:ADP601 4.4 210.3 1.0
OD2 Z:ASP393 4.5 69.5 1.0
O Z:THR92 4.7 58.7 1.0
CB Z:ASP59 4.8 62.5 1.0
O2A Z:ADP601 4.8 200.0 1.0
O1A Z:ADP601 4.9 177.2 1.0

Fluorine binding site 8 out of 36 in 7nvo

Go back to Fluorine Binding Sites List in 7nvo
Fluorine binding site 8 out of 36 in the Human Tric Complex in Open State with Nanobody Bound


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 8 of Human Tric Complex in Open State with Nanobody Bound within 5.0Å range:
probe atom residue distance (Å) B Occ
Z:F603

b:47.6
occ:1.00
 F2 Z:AF3603 0.0 47.6 1.0
AL Z:AF3603 1.6 55.7 1.0
OD1 Z:ASP90 2.4 63.9 1.0
F3 Z:AF3603 2.8 62.6 1.0
OD2 Z:ASP90 2.8 63.9 1.0
F1 Z:AF3603 2.8 58.2 1.0
N Z:GLY60 2.9 61.2 1.0
CG Z:ASP90 3.0 63.9 1.0
OG1 Z:THR92 3.0 58.7 1.0
CA Z:GLY60 3.6 61.2 1.0
CB Z:ASP59 3.7 62.5 1.0
N Z:ASN61 3.7 62.4 1.0
OD1 Z:ASN61 3.7 62.4 1.0
O1B Z:ADP601 3.8 194.1 1.0
C Z:ASP59 3.9 62.5 1.0
CG Z:ASN61 4.0 62.4 1.0
CA Z:ASP59 4.0 62.5 1.0
O Z:THR92 4.2 58.7 1.0
ND2 Z:ASN61 4.2 62.4 1.0
C Z:GLY60 4.2 61.2 1.0
CE Z:LYS159 4.2 64.3 1.0
CB Z:THR92 4.3 58.7 1.0
C Z:THR92 4.4 58.7 1.0
OG1 Z:THR93 4.4 58.2 1.0
CB Z:ASP90 4.5 63.9 1.0
N Z:THR92 4.5 58.7 1.0
NZ Z:LYS159 4.6 64.3 1.0
CG Z:ASP59 4.6 62.5 1.0
CA Z:THR92 4.7 58.7 1.0
CB Z:ASN61 4.8 62.4 1.0
OD2 Z:ASP393 4.8 69.5 1.0
CA Z:ASN61 4.9 62.4 1.0
OD2 Z:ASP59 4.9 62.5 1.0
CB Z:THR93 4.9 58.2 1.0
PB Z:ADP601 5.0 189.6 1.0

Fluorine binding site 9 out of 36 in 7nvo

Go back to Fluorine Binding Sites List in 7nvo
Fluorine binding site 9 out of 36 in the Human Tric Complex in Open State with Nanobody Bound


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 9 of Human Tric Complex in Open State with Nanobody Bound within 5.0Å range:
probe atom residue distance (Å) B Occ
Z:F603

b:62.6
occ:1.00
 F3 Z:AF3603 0.0 62.6 1.0
AL Z:AF3603 1.6 55.7 1.0
O Z:THR92 2.1 58.7 1.0
O1B Z:ADP601 2.6 194.1 1.0
O3B Z:ADP601 2.7 161.5 1.0
F1 Z:AF3603 2.8 58.2 1.0
F2 Z:AF3603 2.8 47.6 1.0
PB Z:ADP601 2.9 189.6 1.0
C Z:THR92 3.0 58.7 1.0
O3A Z:ADP601 3.1 202.8 1.0
CB Z:THR93 3.1 58.2 1.0
OG1 Z:THR93 3.4 58.2 1.0
O1A Z:ADP601 3.5 177.2 1.0
OD1 Z:ASP90 3.6 63.9 1.0
N Z:THR93 3.8 58.2 1.0
PA Z:ADP601 3.9 210.3 1.0
CA Z:THR93 3.9 58.2 1.0
OG1 Z:THR92 4.0 58.7 1.0
N Z:THR92 4.0 58.7 1.0
CA Z:THR92 4.0 58.7 1.0
CG2 Z:THR93 4.0 58.2 1.0
N Z:GLY60 4.3 61.2 1.0
CG Z:ASP90 4.3 63.9 1.0
OD2 Z:ASP90 4.3 63.9 1.0
MG Z:MG602 4.4 30.0 1.0
C Z:GLY91 4.4 60.2 1.0
O2B Z:ADP601 4.4 179.6 1.0
CB Z:THR92 4.6 58.7 1.0
C Z:THR93 4.6 58.2 1.0
N Z:SER94 4.6 56.9 1.0
CA Z:GLY60 4.7 61.2 1.0
O2A Z:ADP601 4.8 200.0 1.0
O Z:GLY91 4.9 60.2 1.0
CA Z:GLY91 5.0 60.2 1.0

Fluorine binding site 10 out of 36 in 7nvo

Go back to Fluorine Binding Sites List in 7nvo
Fluorine binding site 10 out of 36 in the Human Tric Complex in Open State with Nanobody Bound


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 10 of Human Tric Complex in Open State with Nanobody Bound within 5.0Å range:
probe atom residue distance (Å) B Occ
G:F603

b:58.2
occ:1.00
 F1 G:AF3603 0.0 58.2 1.0
AL G:AF3603 1.6 55.7 1.0
O3B G:ADP601 2.5 194.1 1.0
F3 G:AF3603 2.8 62.6 1.0
F2 G:AF3603 2.8 47.6 1.0
O3A G:ADP601 3.1 202.8 1.0
CG2 G:THR96 3.1 59.4 1.0
CG2 G:THR95 3.2 63.1 1.0
PB G:ADP601 3.3 189.6 1.0
N G:THR96 3.5 59.4 1.0
O1B G:ADP601 3.7 161.5 1.0
CB G:THR96 3.8 59.4 1.0
N G:THR95 3.8 63.1 1.0
MG G:MG602 3.9 30.0 1.0
CA G:THR96 4.3 59.4 1.0
C G:THR95 4.3 63.1 1.0
CA G:THR95 4.4 63.1 1.0
CB G:THR95 4.4 63.1 1.0
N G:GLY94 4.5 62.3 1.0
PA G:ADP601 4.5 210.3 1.0
OD1 G:ASP93 4.5 63.9 1.0
O2B G:ADP601 4.6 179.6 1.0
O2A G:ADP601 4.7 200.0 1.0
C G:GLY94 4.9 62.3 1.0
CA G:GLY94 4.9 62.3 1.0

Reference:

J.J.Kelly, D.Tranter, E.Pardon, G.Chi, H.Kramer, L.Happonen, K.M.Knee, J.M.Janz, J.Steyaert, C.Bulawa, V.O.Paavilainen, J.T.Huiskonen, W.W.Yue. Snapshots of Actin and Tubulin Folding Inside the Tric Chaperonin. Nat.Struct.Mol.Biol. V. 29 420 2022.
ISSN: ESSN 1545-9985
PubMed: 35449234
DOI: 10.1038/S41594-022-00755-1
Page generated: Fri Aug 2 10:14:59 2024

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