Fluorine in PDB 7q2x: Cryo-Em Structure of Clamped S.Cerevisiae Condensin-Dna Complex (Form I)

The structure of Cryo-Em Structure of Clamped S.Cerevisiae Condensin-Dna Complex (Form I) also contains other interesting chemical elements:

Magnesium

(Mg)

2 atoms

The binding sites of Fluorine atom in the Cryo-Em Structure of Clamped S.Cerevisiae Condensin-Dna Complex (Form I) (pdb code 7q2x). This binding sites where shown within 5.0 Angstroms radius around Fluorine atom.
In total 6 binding sites of Fluorine where determined in the Cryo-Em Structure of Clamped S.Cerevisiae Condensin-Dna Complex (Form I), PDB code: 7q2x:
Jump to Fluorine binding site number: 1; 2; 3; 4; 5; 6;

Fluorine binding site 1 out of 6 in the Cryo-Em Structure of Clamped S.Cerevisiae Condensin-Dna Complex (Form I)


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 1 of Cryo-Em Structure of Clamped S.Cerevisiae Condensin-Dna Complex (Form I) within 5.0Å range: probe atom residue distance (Å) B Occ A:F2002 b:18.9 occ:1.00 F1 A:BEF2002 0.0 18.9 1.0 BE A:BEF2002 1.5 18.9 1.0 F3 A:BEF2002 2.5 18.9 1.0 F2 A:BEF2002 2.6 18.9 1.0 NE2 A:GLN147 2.6 14.3 1.0 OE2 A:GLU1113 2.7 15.3 1.0 O B:ALA1356 2.9 16.0 1.0 OE1 A:GLU1113 3.0 15.3 1.0 CD A:GLU1113 3.2 15.3 1.0 CB B:ALA1356 3.5 16.0 1.0 C B:ALA1356 3.5 16.0 1.0 CA B:ALA1356 3.7 16.0 1.0 CD A:GLN147 3.9 14.3 1.0 CD1 A:LEU1144 3.9 15.0 1.0 O2B A:ADP2001 4.0 27.6 1.0 N B:GLY1326 4.0 15.3 1.0 ND2 A:ASN34 4.1 17.9 1.0 O3B A:ADP2001 4.2 27.6 1.0 MG A:MG2003 4.4 20.8 1.0 C B:GLY1325 4.5 15.5 1.0 CA B:GLY1325 4.5 15.5 1.0 PB A:ADP2001 4.5 27.6 1.0 OE1 A:GLN147 4.5 14.3 1.0 N B:LEU1357 4.6 16.3 1.0 CA B:GLY1326 4.7 15.3 1.0 CG A:GLU1113 4.7 15.3 1.0 CG A:GLN147 4.8 14.3 1.0 N B:GLY1325 4.8 15.5 1.0

Fluorine binding site 2 out of 6 in the Cryo-Em Structure of Clamped S.Cerevisiae Condensin-Dna Complex (Form I)


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 2 of Cryo-Em Structure of Clamped S.Cerevisiae Condensin-Dna Complex (Form I) within 5.0Å range: probe atom residue distance (Å) B Occ A:F2002 b:18.9 occ:1.00 F2 A:BEF2002 0.0 18.9 1.0 BE A:BEF2002 1.6 18.9 1.0 N B:GLY1326 2.5 15.3 1.0 F3 A:BEF2002 2.5 18.9 1.0 F1 A:BEF2002 2.6 18.9 1.0 O2B A:ADP2001 2.7 27.6 1.0 O3B A:ADP2001 2.9 27.6 1.0 N B:GLY1325 3.3 15.5 1.0 PB A:ADP2001 3.3 27.6 1.0 CA B:GLY1326 3.3 15.3 1.0 OG B:SER1324 3.4 16.2 1.0 C B:GLY1325 3.4 15.5 1.0 CA B:GLY1325 3.6 15.5 1.0 ND2 A:ASN34 3.6 17.9 1.0 CB B:SER1324 3.7 16.2 1.0 NE2 A:GLN147 3.7 14.3 1.0 C B:SER1324 4.0 16.2 1.0 O B:ALA1356 4.1 16.0 1.0 O3A A:ADP2001 4.2 27.6 1.0 MG A:MG2003 4.2 20.8 1.0 CA B:SER1324 4.4 16.2 1.0 CB A:ASN34 4.4 17.9 1.0 CG A:ASN34 4.5 17.9 1.0 C B:GLY1326 4.5 15.3 1.0 OE1 A:GLN147 4.6 14.3 1.0 O B:GLY1325 4.6 15.5 1.0 CD A:GLN147 4.6 14.3 1.0 O1B A:ADP2001 4.6 27.6 1.0 OE2 A:GLU1113 4.6 15.3 1.0 N B:GLU1327 4.7 16.3 1.0 CA A:ASN34 4.7 17.9 1.0 N A:GLY35 4.7 19.6 1.0 O B:SER1324 4.7 16.2 1.0

Fluorine binding site 3 out of 6 in the Cryo-Em Structure of Clamped S.Cerevisiae Condensin-Dna Complex (Form I)


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 3 of Cryo-Em Structure of Clamped S.Cerevisiae Condensin-Dna Complex (Form I) within 5.0Å range: probe atom residue distance (Å) B Occ A:F2002 b:18.9 occ:1.00 F3 A:BEF2002 0.0 18.9 1.0 BE A:BEF2002 1.5 18.9 1.0 O3B A:ADP2001 2.2 27.6 1.0 F2 A:BEF2002 2.5 18.9 1.0 F1 A:BEF2002 2.5 18.9 1.0 ND2 A:ASN34 2.7 17.9 1.0 CD1 A:LEU1144 3.2 15.0 1.0 PB A:ADP2001 3.2 27.6 1.0 NZ A:LYS38 3.5 16.6 1.0 O2B A:ADP2001 3.6 27.6 1.0 CG A:ASN34 3.7 17.9 1.0 OE2 A:GLU1113 3.8 15.3 1.0 CA A:ASN34 4.0 17.9 1.0 O1B A:ADP2001 4.0 27.6 1.0 O B:ALA1356 4.1 16.0 1.0 CG A:LEU1144 4.1 15.0 1.0 CB A:ASN34 4.1 17.9 1.0 CD2 A:LEU1144 4.2 15.0 1.0 CE A:LYS38 4.2 16.6 1.0 NE2 A:GLN147 4.3 14.3 1.0 OE1 A:GLU1113 4.3 15.3 1.0 CD A:GLU1113 4.4 15.3 1.0 O3A A:ADP2001 4.5 27.6 1.0 N B:GLY1326 4.6 15.3 1.0 OD1 A:ASN34 4.7 17.9 1.0 MG A:MG2003 4.7 20.8 1.0 N A:ASN34 4.7 17.9 1.0 C B:ALA1356 4.8 16.0 1.0 N A:GLY35 4.8 19.6 1.0 CA B:GLY1326 4.9 15.3 1.0 O A:LEU33 5.0 17.1 1.0 C A:ASN34 5.0 17.9 1.0

Fluorine binding site 4 out of 6 in the Cryo-Em Structure of Clamped S.Cerevisiae Condensin-Dna Complex (Form I)


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 4 of Cryo-Em Structure of Clamped S.Cerevisiae Condensin-Dna Complex (Form I) within 5.0Å range: probe atom residue distance (Å) B Occ B:F2002 b:17.1 occ:1.00 F1 B:BEF2002 0.0 17.1 1.0 BE B:BEF2002 1.5 17.1 1.0 MG B:MG2003 2.0 16.2 1.0 O1B B:ADP2001 2.5 18.5 1.0 F3 B:BEF2002 2.5 17.1 1.0 F2 B:BEF2002 2.6 17.1 1.0 OE1 B:GLN302 2.7 18.4 1.0 NE2 B:GLN302 2.8 18.4 1.0 OG A:SER1085 3.0 18.9 1.0 CD B:GLN302 3.1 18.4 1.0 O3B B:ADP2001 3.3 18.5 1.0 PB B:ADP2001 3.4 18.5 1.0 N A:GLY1086 4.0 17.5 1.0 O1A B:ADP2001 4.0 18.5 1.0 OG B:SER192 4.1 15.9 1.0 CB A:SER1085 4.2 18.9 1.0 O2B B:ADP2001 4.4 18.5 1.0 N A:GLY1087 4.6 16.9 1.0 O3A B:ADP2001 4.6 18.5 1.0 CG B:GLN302 4.6 18.4 1.0 ND2 B:ASN187 4.7 14.3 1.0 CA A:SER1085 4.7 18.9 1.0 CA A:GLY1086 4.7 17.5 1.0 C A:SER1085 4.8 18.9 1.0 CB B:SER192 4.8 15.9 1.0 PA B:ADP2001 4.9 18.5 1.0

Fluorine binding site 5 out of 6 in the Cryo-Em Structure of Clamped S.Cerevisiae Condensin-Dna Complex (Form I)


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 5 of Cryo-Em Structure of Clamped S.Cerevisiae Condensin-Dna Complex (Form I) within 5.0Å range: probe atom residue distance (Å) B Occ B:F2002 b:17.1 occ:1.00 F2 B:BEF2002 0.0 17.1 1.0 BE B:BEF2002 1.6 17.1 1.0 F3 B:BEF2002 2.5 17.1 1.0 F1 B:BEF2002 2.6 17.1 1.0 ND2 B:ASN187 3.0 14.3 1.0 NE2 B:GLN302 3.2 18.4 1.0 O A:ALA1117 3.5 14.9 1.0 CD1 B:LEU1383 3.7 16.7 1.0 CD B:GLN302 3.9 18.4 1.0 MG B:MG2003 4.0 16.2 1.0 O1B B:ADP2001 4.0 18.5 1.0 OE2 B:GLU1352 4.1 18.3 1.0 OE1 B:GLN302 4.1 18.4 1.0 CG B:ASN187 4.3 14.3 1.0 CD B:GLU1352 4.4 18.3 1.0 CE B:LYS191 4.4 14.9 1.0 CG B:GLU1352 4.5 18.3 1.0 C A:ALA1117 4.5 14.9 1.0 OG A:SER1085 4.5 18.9 1.0 NZ B:LYS191 4.5 14.9 1.0 N A:GLY1087 4.6 16.9 1.0 CG B:LEU1383 4.7 16.7 1.0 PB B:ADP2001 4.8 18.5 1.0 CA A:ALA1117 4.9 14.9 1.0 O3B B:ADP2001 4.9 18.5 1.0 CB A:ALA1117 5.0 14.9 1.0

Fluorine binding site 6 out of 6 in the Cryo-Em Structure of Clamped S.Cerevisiae Condensin-Dna Complex (Form I)


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 6 of Cryo-Em Structure of Clamped S.Cerevisiae Condensin-Dna Complex (Form I) within 5.0Å range: probe atom residue distance (Å) B Occ B:F2002 b:17.1 occ:1.00 F3 B:BEF2002 0.0 17.1 1.0 BE B:BEF2002 1.5 17.1 1.0 O1B B:ADP2001 2.4 18.5 1.0 OG A:SER1085 2.4 18.9 1.0 F2 B:BEF2002 2.5 17.1 1.0 ND2 B:ASN187 2.5 14.3 1.0 F1 B:BEF2002 2.5 17.1 1.0 CB B:ASN187 3.3 14.3 1.0 CG B:ASN187 3.4 14.3 1.0 CA B:ASN187 3.4 14.3 1.0 N B:GLY188 3.5 16.2 1.0 N A:GLY1087 3.6 16.9 1.0 PB B:ADP2001 3.6 18.5 1.0 CB A:SER1085 3.8 18.9 1.0 C B:ASN187 3.9 14.3 1.0 O2B B:ADP2001 4.0 18.5 1.0 CA A:GLY1087 4.0 16.9 1.0 O A:ALA1117 4.2 14.9 1.0 NZ B:LYS191 4.3 14.9 1.0 NE2 B:GLN302 4.4 18.4 1.0 MG B:MG2003 4.4 16.2 1.0 N A:GLY1086 4.4 17.5 1.0 O3B B:ADP2001 4.4 18.5 1.0 OD1 B:ASN187 4.5 14.3 1.0 N B:ASN187 4.6 14.3 1.0 CA B:GLY188 4.6 16.2 1.0 C A:GLY1086 4.7 17.5 1.0 O3A B:ADP2001 4.8 18.5 1.0 CA A:SER1085 4.8 18.9 1.0 C A:SER1085 4.8 18.9 1.0 O1A B:ADP2001 4.9 18.5 1.0 N A:GLN1088 5.0 16.6 1.0 CE B:LYS191 5.0 14.9 1.0 C A:GLY1087 5.0 16.9 1.0

B.G.Lee, J.Rhodes, J.Lowe. Clamping of Dna Shuts the Condensin Neck Gate. Proc.Natl.Acad.Sci.Usa V. 119 06119 2022.
ISSN: ESSN 1091-6490
PubMed: 35349345
DOI: 10.1073/PNAS.2120006119