Fluorine in PDB 7rn6: High-Resolution Crystal Structure of Human JAK2 Kinase Domain (JH1) Bound to Type-II Inhibitor BBT594
Enzymatic activity of High-Resolution Crystal Structure of Human JAK2 Kinase Domain (JH1) Bound to Type-II Inhibitor BBT594
All present enzymatic activity of High-Resolution Crystal Structure of Human JAK2 Kinase Domain (JH1) Bound to Type-II Inhibitor BBT594:
2.7.10.2;
Protein crystallography data
The structure of High-Resolution Crystal Structure of Human JAK2 Kinase Domain (JH1) Bound to Type-II Inhibitor BBT594, PDB code: 7rn6
was solved by
M.R.Karim,
E.Schonbrunn,
with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:
Resolution Low / High (Å)
|
29.08 /
1.50
|
Space group
|
C 1 2 1
|
Cell size a, b, c (Å), α, β, γ (°)
|
107.338,
69.54,
50.733,
90,
98.81,
90
|
R / Rfree (%)
|
18.9 /
21.4
|
Fluorine Binding Sites:
The binding sites of Fluorine atom in the High-Resolution Crystal Structure of Human JAK2 Kinase Domain (JH1) Bound to Type-II Inhibitor BBT594
(pdb code 7rn6). This binding sites where shown within
5.0 Angstroms radius around Fluorine atom.
In total 3 binding sites of Fluorine where determined in the
High-Resolution Crystal Structure of Human JAK2 Kinase Domain (JH1) Bound to Type-II Inhibitor BBT594, PDB code: 7rn6:
Jump to Fluorine binding site number:
1;
2;
3;
Fluorine binding site 1 out
of 3 in 7rn6
Go back to
Fluorine Binding Sites List in 7rn6
Fluorine binding site 1 out
of 3 in the High-Resolution Crystal Structure of Human JAK2 Kinase Domain (JH1) Bound to Type-II Inhibitor BBT594
Mono view
Stereo pair view
|
A full contact list of Fluorine with other atoms in the F binding
site number 1 of High-Resolution Crystal Structure of Human JAK2 Kinase Domain (JH1) Bound to Type-II Inhibitor BBT594 within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:F1201
b:19.8
occ:1.00
|
F1
|
A:0461201
|
0.0
|
19.8
|
1.0
|
C2
|
A:0461201
|
1.3
|
18.2
|
1.0
|
F3
|
A:0461201
|
2.1
|
19.4
|
1.0
|
F4
|
A:0461201
|
2.2
|
18.2
|
1.0
|
C5
|
A:0461201
|
2.3
|
15.7
|
1.0
|
C6
|
A:0461201
|
3.1
|
18.3
|
1.0
|
CD2
|
A:HIS974
|
3.2
|
17.6
|
1.0
|
C51
|
A:0461201
|
3.2
|
19.1
|
1.0
|
NE2
|
A:HIS974
|
3.3
|
18.3
|
1.0
|
C12
|
A:0461201
|
3.3
|
19.1
|
1.0
|
O
|
A:GLY993
|
3.6
|
16.7
|
1.0
|
C
|
A:GLY993
|
3.7
|
17.8
|
1.0
|
CG2
|
A:ILE992
|
3.7
|
18.8
|
1.0
|
CA
|
A:GLY993
|
3.9
|
18.4
|
1.0
|
CD1
|
A:LEU967
|
4.0
|
16.6
|
0.3
|
CG
|
A:HIS974
|
4.3
|
14.8
|
1.0
|
C7
|
A:0461201
|
4.3
|
20.0
|
1.0
|
N
|
A:GLY993
|
4.3
|
15.8
|
1.0
|
N
|
A:ASP994
|
4.3
|
20.6
|
1.0
|
C65
|
A:0461201
|
4.3
|
15.7
|
1.0
|
N54
|
A:0461201
|
4.4
|
17.1
|
1.0
|
CB
|
A:ASP994
|
4.4
|
22.1
|
1.0
|
CE1
|
A:HIS974
|
4.4
|
17.5
|
1.0
|
O
|
A:ILE992
|
4.5
|
18.6
|
1.0
|
C
|
A:ILE992
|
4.5
|
18.2
|
1.0
|
C11
|
A:0461201
|
4.5
|
18.4
|
1.0
|
CD2
|
A:LEU967
|
4.7
|
17.1
|
0.7
|
CB
|
A:ILE992
|
4.8
|
14.2
|
1.0
|
CD1
|
A:LEU967
|
4.9
|
17.1
|
0.7
|
C9
|
A:0461201
|
4.9
|
21.0
|
1.0
|
ND1
|
A:HIS974
|
4.9
|
16.7
|
1.0
|
CD2
|
A:LEU967
|
5.0
|
18.4
|
0.3
|
CA
|
A:ASP994
|
5.0
|
21.7
|
1.0
|
|
Fluorine binding site 2 out
of 3 in 7rn6
Go back to
Fluorine Binding Sites List in 7rn6
Fluorine binding site 2 out
of 3 in the High-Resolution Crystal Structure of Human JAK2 Kinase Domain (JH1) Bound to Type-II Inhibitor BBT594
Mono view
Stereo pair view
|
A full contact list of Fluorine with other atoms in the F binding
site number 2 of High-Resolution Crystal Structure of Human JAK2 Kinase Domain (JH1) Bound to Type-II Inhibitor BBT594 within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:F1201
b:19.4
occ:1.00
|
F3
|
A:0461201
|
0.0
|
19.4
|
1.0
|
C2
|
A:0461201
|
1.3
|
18.2
|
1.0
|
F4
|
A:0461201
|
2.1
|
18.2
|
1.0
|
F1
|
A:0461201
|
2.1
|
19.8
|
1.0
|
C5
|
A:0461201
|
2.3
|
15.7
|
1.0
|
C51
|
A:0461201
|
2.8
|
19.1
|
1.0
|
C6
|
A:0461201
|
2.9
|
18.3
|
1.0
|
CD1
|
A:LEU905
|
3.2
|
18.7
|
1.0
|
C12
|
A:0461201
|
3.5
|
19.1
|
1.0
|
CD2
|
A:LEU967
|
3.6
|
18.4
|
0.3
|
CD1
|
A:LEU967
|
3.6
|
17.1
|
0.7
|
CD1
|
A:LEU967
|
3.8
|
16.6
|
0.3
|
CG
|
A:LEU967
|
4.2
|
15.1
|
0.3
|
C7
|
A:0461201
|
4.2
|
20.0
|
1.0
|
CG2
|
A:ILE910
|
4.2
|
21.0
|
1.0
|
N54
|
A:0461201
|
4.3
|
17.1
|
1.0
|
CD2
|
A:LEU967
|
4.6
|
17.1
|
0.7
|
C11
|
A:0461201
|
4.6
|
18.4
|
1.0
|
CD1
|
A:ILE910
|
4.6
|
22.3
|
1.0
|
CG
|
A:LEU905
|
4.7
|
19.0
|
1.0
|
CG
|
A:LEU967
|
4.7
|
15.4
|
0.7
|
CG2
|
A:ILE901
|
4.9
|
19.8
|
1.0
|
CD2
|
A:HIS974
|
4.9
|
17.6
|
1.0
|
C55
|
A:0461201
|
4.9
|
15.6
|
1.0
|
C65
|
A:0461201
|
4.9
|
15.7
|
1.0
|
C9
|
A:0461201
|
5.0
|
21.0
|
1.0
|
|
Fluorine binding site 3 out
of 3 in 7rn6
Go back to
Fluorine Binding Sites List in 7rn6
Fluorine binding site 3 out
of 3 in the High-Resolution Crystal Structure of Human JAK2 Kinase Domain (JH1) Bound to Type-II Inhibitor BBT594
Mono view
Stereo pair view
|
A full contact list of Fluorine with other atoms in the F binding
site number 3 of High-Resolution Crystal Structure of Human JAK2 Kinase Domain (JH1) Bound to Type-II Inhibitor BBT594 within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:F1201
b:18.2
occ:1.00
|
F4
|
A:0461201
|
0.0
|
18.2
|
1.0
|
C2
|
A:0461201
|
1.4
|
18.2
|
1.0
|
F3
|
A:0461201
|
2.1
|
19.4
|
1.0
|
F1
|
A:0461201
|
2.2
|
19.8
|
1.0
|
C5
|
A:0461201
|
2.4
|
15.7
|
1.0
|
C12
|
A:0461201
|
2.7
|
19.1
|
1.0
|
O
|
A:ILE992
|
3.2
|
18.6
|
1.0
|
CA
|
A:GLY993
|
3.4
|
18.4
|
1.0
|
CG2
|
A:ILE910
|
3.6
|
21.0
|
1.0
|
C6
|
A:0461201
|
3.7
|
18.3
|
1.0
|
CG2
|
A:VAL911
|
3.7
|
20.5
|
1.0
|
C
|
A:ILE992
|
3.8
|
18.2
|
1.0
|
N
|
A:GLY993
|
4.0
|
15.8
|
1.0
|
C
|
A:GLY993
|
4.1
|
17.8
|
1.0
|
C11
|
A:0461201
|
4.1
|
18.4
|
1.0
|
C51
|
A:0461201
|
4.4
|
19.1
|
1.0
|
CG2
|
A:ILE992
|
4.4
|
18.8
|
1.0
|
O17
|
A:0461201
|
4.4
|
16.3
|
1.0
|
CD1
|
A:LEU905
|
4.5
|
18.7
|
1.0
|
CD1
|
A:ILE910
|
4.5
|
22.3
|
1.0
|
O
|
A:GLY993
|
4.5
|
16.7
|
1.0
|
N
|
A:ASP994
|
4.6
|
20.6
|
1.0
|
N
|
A:VAL911
|
4.6
|
16.8
|
1.0
|
CD2
|
A:LEU902
|
4.7
|
20.7
|
1.0
|
CB
|
A:ILE910
|
4.8
|
16.9
|
1.0
|
C7
|
A:0461201
|
4.8
|
20.0
|
1.0
|
CB
|
A:ILE992
|
4.8
|
14.2
|
1.0
|
CA
|
A:ILE992
|
4.9
|
16.3
|
1.0
|
C9
|
A:0461201
|
5.0
|
21.0
|
1.0
|
CB
|
A:VAL911
|
5.0
|
17.0
|
1.0
|
|
Reference:
M.R.Karim,
E.Schonbrunn.
High-Resolution Crystal Structure of Human JAK2 Kinase Domain (JH1) Bound to Type-II Inhibitor BBT594 To Be Published.
Page generated: Fri Nov 5 13:17:20 2021
|