Atomistry » Fluorine » PDB 7rmz-7ryb » 7ryb
Atomistry »
  Fluorine »
    PDB 7rmz-7ryb »
      7ryb »

Fluorine in PDB 7ryb: S. Cerevisiae CYP51 Y140H/I471T - Double Mutant Complexed with Voriconazole

Protein crystallography data

The structure of S. Cerevisiae CYP51 Y140H/I471T - Double Mutant Complexed with Voriconazole, PDB code: 7ryb was solved by D.O.Graham, R.K.Wilson, Y.N.Ruma, M.V.Keniya, J.D.Tyndall, B.C.Monk, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 33.75 / 2.90
Space group P 1 21 1
Cell size a, b, c (Å), α, β, γ (°) 79.18, 67.3, 81.33, 90, 99.79, 90
R / Rfree (%) 20.3 / 25.1

Other elements in 7ryb:

The structure of S. Cerevisiae CYP51 Y140H/I471T - Double Mutant Complexed with Voriconazole also contains other interesting chemical elements:

Iron (Fe) 1 atom

Fluorine Binding Sites:

The binding sites of Fluorine atom in the S. Cerevisiae CYP51 Y140H/I471T - Double Mutant Complexed with Voriconazole (pdb code 7ryb). This binding sites where shown within 5.0 Angstroms radius around Fluorine atom.
In total 3 binding sites of Fluorine where determined in the S. Cerevisiae CYP51 Y140H/I471T - Double Mutant Complexed with Voriconazole, PDB code: 7ryb:
Jump to Fluorine binding site number: 1; 2; 3;

Fluorine binding site 1 out of 3 in 7ryb

Go back to Fluorine Binding Sites List in 7ryb
Fluorine binding site 1 out of 3 in the S. Cerevisiae CYP51 Y140H/I471T - Double Mutant Complexed with Voriconazole


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 1 of S. Cerevisiae CYP51 Y140H/I471T - Double Mutant Complexed with Voriconazole within 5.0Å range:
probe atom residue distance (Å) B Occ
A:F602

b:44.7
occ:1.00
F1 A:VOR602 0.0 44.7 1.0
C16 A:VOR602 1.3 41.2 1.0
C19 A:VOR602 2.3 40.6 1.0
C13 A:VOR602 2.3 44.2 1.0
C10 A:VOR602 2.9 45.5 1.0
C11 A:VOR602 2.9 45.9 1.0
C12 A:VOR602 3.1 39.1 1.0
N7 A:VOR602 3.2 47.8 1.0
CZ A:PHE236 3.4 58.1 1.0
N5 A:VOR602 3.5 44.4 1.0
CA A:GLY314 3.5 41.6 1.0
C22 A:VOR602 3.5 42.6 1.0
C17 A:VOR602 3.6 44.8 1.0
C14 A:VOR602 3.8 46.2 1.0
CZ A:PHE134 3.8 57.5 1.0
C15 A:VOR602 4.1 45.1 1.0
C20 A:VOR602 4.1 42.9 1.0
N6 A:VOR602 4.1 47.1 1.0
CE1 A:PHE236 4.1 53.7 1.0
CE2 A:PHE236 4.2 60.3 1.0
O4 A:VOR602 4.3 47.5 1.0
N A:GLY314 4.3 45.5 1.0
C25 A:VOR602 4.3 42.2 1.0
CE2 A:PHE134 4.5 55.8 1.0
F3 A:VOR602 4.6 43.7 1.0
C21 A:VOR602 4.7 43.3 1.0
C A:GLY314 4.7 44.0 1.0
O A:GLY310 4.8 47.4 1.0
CE1 A:PHE134 4.8 58.4 1.0

Fluorine binding site 2 out of 3 in 7ryb

Go back to Fluorine Binding Sites List in 7ryb
Fluorine binding site 2 out of 3 in the S. Cerevisiae CYP51 Y140H/I471T - Double Mutant Complexed with Voriconazole


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 2 of S. Cerevisiae CYP51 Y140H/I471T - Double Mutant Complexed with Voriconazole within 5.0Å range:
probe atom residue distance (Å) B Occ
A:F602

b:55.7
occ:1.00
F2 A:VOR602 0.0 55.7 1.0
C18 A:VOR602 1.4 46.8 1.0
C23 A:VOR602 2.4 45.8 1.0
C15 A:VOR602 2.4 45.1 1.0
O4 A:VOR602 2.9 47.5 1.0
C11 A:VOR602 3.0 45.9 1.0
C14 A:VOR602 3.0 46.2 1.0
C10 A:VOR602 3.4 45.5 1.0
CZ A:TYR126 3.5 55.8 1.0
N9 A:VOR602 3.6 54.0 1.0
N6 A:VOR602 3.6 47.1 1.0
CE2 A:TYR126 3.7 54.5 1.0
CE1 A:TYR126 3.8 50.5 1.0
OH A:TYR126 3.8 60.4 1.0
O A:HOH701 3.9 41.1 1.0
C24 A:VOR602 4.0 55.2 1.0
O1A A:HEM601 4.0 48.9 1.0
C12 A:VOR602 4.1 39.1 1.0
CD2 A:TYR126 4.2 53.9 1.0
CD1 A:TYR126 4.2 48.9 1.0
CD2 A:LEU383 4.3 44.1 1.0
CG A:TYR126 4.4 54.4 1.0
CBA A:HEM601 4.4 43.0 1.0
CGA A:HEM601 4.7 46.8 1.0
C13 A:VOR602 4.7 44.2 1.0
CD1 A:LEU380 4.8 41.8 1.0

Fluorine binding site 3 out of 3 in 7ryb

Go back to Fluorine Binding Sites List in 7ryb
Fluorine binding site 3 out of 3 in the S. Cerevisiae CYP51 Y140H/I471T - Double Mutant Complexed with Voriconazole


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 3 of S. Cerevisiae CYP51 Y140H/I471T - Double Mutant Complexed with Voriconazole within 5.0Å range:
probe atom residue distance (Å) B Occ
A:F602

b:43.7
occ:1.00
F3 A:VOR602 0.0 43.7 1.0
C22 A:VOR602 1.4 42.6 1.0
C19 A:VOR602 2.3 40.6 1.0
C20 A:VOR602 2.3 42.9 1.0
O A:GLY310 3.2 47.4 1.0
C A:GLY310 3.4 50.5 1.0
CD1 A:ILE139 3.5 49.9 1.0
C16 A:VOR602 3.6 41.2 1.0
C17 A:VOR602 3.6 44.8 1.0
N A:VAL311 3.7 49.1 1.0
CA A:VAL311 3.8 44.7 1.0
C13 A:VOR602 4.1 44.2 1.0
CA A:GLY310 4.1 49.0 1.0
CG1 A:ILE139 4.2 54.0 1.0
CG2 A:VAL311 4.3 44.6 1.0
CE2 A:PHE134 4.3 55.8 1.0
CG2 A:ILE139 4.4 56.2 1.0
CMD A:HEM601 4.5 40.1 1.0
F1 A:VOR602 4.6 44.7 1.0
CZ A:PHE134 4.7 57.5 1.0
C2D A:HEM601 4.8 44.9 1.0
CB A:VAL311 4.8 47.6 1.0
C A:VAL311 4.9 45.8 1.0
O A:VAL311 4.9 47.8 1.0
CHD A:HEM601 5.0 43.6 1.0
CD2 A:PHE134 5.0 57.6 1.0
C1D A:HEM601 5.0 44.3 1.0

Reference:

D.O.Graham, R.K.Wilson, Y.N.Ruma, M.V.Keniya, J.D.Tyndall, B.C.Monk. Structural Insights Into the Azole Resistance of the Candida Albicans Darlington Strain Using Saccharomyces Cerevisiae Lanosterol 14ALPHA-Demethylase As A Surrogate To Be Published.
Page generated: Wed Jul 16 00:00:08 2025

Last articles

Fe in 2YXO
Fe in 2YRS
Fe in 2YXC
Fe in 2YNM
Fe in 2YVJ
Fe in 2YP1
Fe in 2YU2
Fe in 2YU1
Fe in 2YQB
Fe in 2YOO
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy