Fluorine in PDB 7vdv: The Overall Structure of Human Chromatin Remodeling Pbaf-Nucleosome Complex

The structure of The Overall Structure of Human Chromatin Remodeling Pbaf-Nucleosome Complex also contains other interesting chemical elements:

Magnesium

(Mg)

1 atom

The binding sites of Fluorine atom in the The Overall Structure of Human Chromatin Remodeling Pbaf-Nucleosome Complex (pdb code 7vdv). This binding sites where shown within 5.0 Angstroms radius around Fluorine atom.
In total 3 binding sites of Fluorine where determined in the The Overall Structure of Human Chromatin Remodeling Pbaf-Nucleosome Complex, PDB code: 7vdv:
Jump to Fluorine binding site number: 1; 2; 3;

Fluorine binding site 1 out of 3 in the The Overall Structure of Human Chromatin Remodeling Pbaf-Nucleosome Complex


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 1 of The Overall Structure of Human Chromatin Remodeling Pbaf-Nucleosome Complex within 5.0Å range: probe atom residue distance (Å) B Occ A:F1701 b:158.7 occ:1.00 F1 A:BEF1701 0.0 158.7 1.0 BE A:BEF1701 1.7 158.7 1.0 NH2 A:ARG1192 2.1 145.1 1.0 NH2 A:ARG1189 2.4 135.8 1.0 F3 A:BEF1701 2.6 158.7 1.0 F2 A:BEF1701 2.8 158.7 1.0 CZ A:ARG1192 3.0 145.1 1.0 O A:MET781 3.2 147.6 1.0 CA A:GLY1162 3.2 123.4 1.0 NH1 A:ARG1192 3.2 145.1 1.0 CZ A:ARG1189 3.3 135.8 1.0 NH1 A:ARG1189 3.5 135.8 1.0 O2B A:ADP1703 3.9 158.3 1.0 N A:LEU1163 4.0 130.9 1.0 O1B A:ADP1703 4.0 158.3 1.0 C A:GLY1162 4.0 123.4 1.0 NE A:ARG1192 4.2 145.1 1.0 N A:GLY1162 4.3 123.4 1.0 O1A A:ADP1703 4.3 158.3 1.0 C A:MET781 4.3 147.6 1.0 O A:LEU1163 4.5 130.9 1.0 PB A:ADP1703 4.5 158.3 1.0 NE A:ARG1189 4.6 135.8 1.0 O A:LEU1161 4.6 116.3 1.0 CD A:ARG1192 4.7 145.1 1.0 O A:ASP1188 4.7 136.0 1.0 MG A:MG1702 4.8 188.1 1.0 C A:LEU1161 4.8 116.3 1.0 CA A:MET781 4.9 147.6 1.0 O A:GLY1162 5.0 123.4 1.0

Fluorine binding site 2 out of 3 in the The Overall Structure of Human Chromatin Remodeling Pbaf-Nucleosome Complex


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 2 of The Overall Structure of Human Chromatin Remodeling Pbaf-Nucleosome Complex within 5.0Å range: probe atom residue distance (Å) B Occ A:F1701 b:158.7 occ:1.00 F2 A:BEF1701 0.0 158.7 1.0 BE A:BEF1701 1.7 158.7 1.0 MG A:MG1702 2.1 188.1 1.0 O1A A:ADP1703 2.1 158.3 1.0 O2B A:ADP1703 2.2 158.3 1.0 F3 A:BEF1701 2.7 158.7 1.0 F1 A:BEF1701 2.8 158.7 1.0 NH1 A:ARG1192 3.1 145.1 1.0 PB A:ADP1703 3.3 158.3 1.0 PA A:ADP1703 3.4 158.3 1.0 O1B A:ADP1703 3.6 158.3 1.0 O3A A:ADP1703 3.8 158.3 1.0 NH2 A:ARG1192 3.9 145.1 1.0 CZ A:ARG1192 3.9 145.1 1.0 CA A:GLY1162 4.1 123.4 1.0 OG1 A:THR786 4.2 154.7 1.0 O2A A:ADP1703 4.3 158.3 1.0 O A:MET781 4.3 147.6 1.0 CE A:LYS785 4.5 152.0 1.0 O5' A:ADP1703 4.5 158.3 1.0 CB A:LYS785 4.6 152.0 1.0 O3B A:ADP1703 4.6 158.3 1.0 NZ A:LYS785 4.7 152.0 1.0 C A:GLY1162 4.9 123.4 1.0 N A:THR786 5.0 154.7 1.0

Fluorine binding site 3 out of 3 in the The Overall Structure of Human Chromatin Remodeling Pbaf-Nucleosome Complex


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 3 of The Overall Structure of Human Chromatin Remodeling Pbaf-Nucleosome Complex within 5.0Å range: probe atom residue distance (Å) B Occ A:F1701 b:158.7 occ:1.00 F3 A:BEF1701 0.0 158.7 1.0 BE A:BEF1701 1.7 158.7 1.0 O2B A:ADP1703 2.1 158.3 1.0 O A:MET781 2.2 147.6 1.0 F1 A:BEF1701 2.6 158.7 1.0 F2 A:BEF1701 2.7 158.7 1.0 NZ A:LYS785 2.9 152.0 1.0 C A:MET781 3.0 147.6 1.0 PB A:ADP1703 3.0 158.3 1.0 O1B A:ADP1703 3.3 158.3 1.0 CE A:LYS785 3.3 152.0 1.0 CA A:MET781 3.3 147.6 1.0 NH2 A:ARG1192 3.5 145.1 1.0 O3B A:ADP1703 3.7 158.3 1.0 MG A:MG1702 3.7 188.1 1.0 NH1 A:ARG1192 4.0 145.1 1.0 N A:GLY782 4.1 151.9 1.0 CB A:MET781 4.1 147.6 1.0 O1A A:ADP1703 4.1 158.3 1.0 CZ A:ARG1192 4.2 145.1 1.0 O A:GLU780 4.3 152.7 1.0 O3A A:ADP1703 4.4 158.3 1.0 N A:MET781 4.5 147.6 1.0 CA A:GLY782 4.6 151.9 1.0 NH1 A:ARG1189 4.7 135.8 1.0 NH2 A:ARG1189 4.7 135.8 1.0 CD A:LYS785 4.7 152.0 1.0 CG A:MET781 4.8 147.6 1.0 C A:GLU780 4.8 152.7 1.0 CB A:LYS785 4.9 152.0 1.0 PA A:ADP1703 4.9 158.3 1.0

J.J.Yuan, K.J.Chen, W.B.Zhang, Z.C.Chen. Structure of Human Chromatin-Remodelling Pbaf Complex Bound to A Nucleosome. Nature V. 605 166 2022.
ISSN: ESSN 1476-4687
PubMed: 35477757
DOI: 10.1038/S41586-022-04658-5